Cla010949 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010949
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 31452818 .. 31454279 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTGATAGATGTGCTGAATGTTGGTGATGGAGTGCAGAGTTTTAATGAAACGTCTGGTAACATTCATTTGTCCTTTCAAGCATAAATGGTTCATAGGTTAATTTACTAAATTGCACTAACTTGTAGTTGTTCTTAGTCAATTTAACAAAATCTCTTTCAGGTATGTATACAAAGAATACTCCTCTTACGTCAAATAATATTAGTGGTCAAGGATCATTGATACAGGTTAGCTGATTTCCTTGCTCCTTGAAATGTTTCCTCAACGTTCATTTATTTGCATCTTCTTGAGTTATAGAATGTGTTCTAAGTTCTCCAAAGGGAAACAACTTTTGGCTAACAAATTTCATTTCATTCAAGGTTCCCTAATGTACATGATTGAATTATCTCGTATCCGTTGGTCCCTAATTTTATTAGGATCTATTTGGTTGTGAGTTATCTTTTATTATTTTTCCCTTTTTCGAGCCTCGGGTTTGGTTTGTAAAAGCATCTCATGAGGGATGTCCTTTGGGAAGAGGTGGATGAAGGAAAAGGCTCACATTTGGTTAGTTGGGAGGTCAATGGGAAGAATATTGTTAGTGAGCATGGCCTTCATCACTTTGAATGGTTGTCAAGTGGGGTTAAAGGCACCTACCAGAATTTGTGGAAGAATATTTTCCTTGAGCTCCCCTCCTTTTCCCATTTTGTTCATTGTGTAGTGGGGGAAGGTAAGGTAATGCATGCTTGGGAAGATGAGTGGGTGAGGGATAGATCCCCATGCTTTATGTTTCCTTGTTTAGATTATTTGTCTTCTCTTAAAAATTGTTTGATCTATGATTTCTTGGTTGGATGAGGAGCTATGTCTCGTTCTCATTTGGGTTCTGTCGTTCCTTGTTTGATAGGGAAATGATAGAGGTTGTCTCTCTTCTATCTTTGATAGGAGAGTTCCATTTTAGGCTTGGGAGAAGAAATGTTCGTGTTTGAATTAATTTTGTGGCGATTCCCTACGAGAAAAAAGAAAAAAGTTATATACTTTCTATTTTGCATCATAACATCAATGGTTTCCTTATCTTACTTTCTGGTTGTTATATACACATGCATATAGTGATATAATCAGGAAATTCAATTCTTTGTAAGAGTGGCTGTTGATCGTCCTTTTCACTTGATATTTAAAGCAGCCTCCTGGATCACAACTTGTTGGAAGATCAGCTGCTTCGCCTTCTGGTGCTACGAGTGCCACATCCTTTGACAACACAACGTCACCATTGCCATATGCTAACTCTCCAAGGTCAAGTGCGAACATTATGAACACACCTTCTCCTCAACAGCAGACCCAACAACAGCAACAGCAGCAACTTCAGCAGGTCCAGCAAAGGCAAAAATTAATGCAACTACCTCAGCATCAGCAACTCCTTGCTCAACAACAGATGAGGCAGTCTTCTATGCAAGGAATAGGACAGGTAACGTTGCTGATACTTTAA

mRNA sequence

ATGCATTTGATAGATGTGCTGAATGTTGGTGATGGAGTGCAGAGTTTTAATGAAACGTCTGGTATGTATACAAAGAATACTCCTCTTACGTCAAATAATATTAGTGGTCAAGGATCATTGATACAGCAGCCTCCTGGATCACAACTTGTTGGAAGATCAGCTGCTTCGCCTTCTGGTGCTACGAGTGCCACATCCTTTGACAACACAACGTCACCATTGCCATATGCTAACTCTCCAAGGTCAAGTGCGAACATTATGAACACACCTTCTCCTCAACAGCAGACCCAACAACAGCAACAGCAGCAACTTCAGCAGGTCCAGCAAAGGCAAAAATTAATGCAACTACCTCAGCATCAGCAACTCCTTGCTCAACAACAGATGAGGCAGTCTTCTATGCAAGGAATAGGACAGGTAACGTTGCTGATACTTTAA

Coding sequence (CDS)

ATGCATTTGATAGATGTGCTGAATGTTGGTGATGGAGTGCAGAGTTTTAATGAAACGTCTGGTATGTATACAAAGAATACTCCTCTTACGTCAAATAATATTAGTGGTCAAGGATCATTGATACAGCAGCCTCCTGGATCACAACTTGTTGGAAGATCAGCTGCTTCGCCTTCTGGTGCTACGAGTGCCACATCCTTTGACAACACAACGTCACCATTGCCATATGCTAACTCTCCAAGGTCAAGTGCGAACATTATGAACACACCTTCTCCTCAACAGCAGACCCAACAACAGCAACAGCAGCAACTTCAGCAGGTCCAGCAAAGGCAAAAATTAATGCAACTACCTCAGCATCAGCAACTCCTTGCTCAACAACAGATGAGGCAGTCTTCTATGCAAGGAATAGGACAGGTAACGTTGCTGATACTTTAA

Protein sequence

MHLIDVLNVGDGVQSFNETSGMYTKNTPLTSNNISGQGSLIQQPPGSQLVGRSAASPSGATSATSFDNTTSPLPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQQQMRQSSMQGIGQVTLLIL

Homology

[Close]

BLAST of Cla010949 vs. Swiss-Prot
Match: MED8_ARATH (Mediator of RNA polymerase II transcription subunit 8 OS=Arabidopsis thaliana GN=MED8 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-27
Identity = 80/140 (57.14%), Postives = 91/140 (65.00%), Query Frame = 1


Query: 2   HLIDVLNVGDGVQSFNETSGMYTKNTPLTSNNISGQGSLIQQPPGSQLVGRSAASPSGAT 61
           HL DVL + D  +             P  SNNI+ QG +  Q  G+Q VGRSAASPSG  
Sbjct: 222 HLADVLIINDAGKIA----------LPGQSNNINNQGMM--QVSGTQFVGRSAASPSGP- 281

Query: 62  SATSFDNTTSPLPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQH--Q 121
              +FDNTTSPLPY+NSPR++  ++N PSPQ Q    QQQQ QQ QQR KLMQLPQH  Q
Sbjct: 282 ---NFDNTTSPLPYSNSPRAT-GMVNVPSPQHQI---QQQQFQQQQQRSKLMQLPQHQQQ 341

Query: 122 QLLA--QQQMRQSSMQGIGQ 138
           QLLA  QQQ+RQSSMQG+GQ
Sbjct: 342 QLLAQQQQQLRQSSMQGLGQ 341

HSP 2 Score: 33.1 bits (74), Expect = 3.0e+00
Identity = 31/108 (28.70%), Postives = 46/108 (42.59%), Query Frame = 1


Query: 35  SGQGSLIQQPPGSQLVGRSAASPSGA---------TSATSFDNTTSPLPYANSPRSSANI 94
           S QGS     P SQ++   ++  S            S T+   + S     +   +++ +
Sbjct: 420 SAQGS-----PSSQMIPNMSSMQSQTLVPRMQQFGVSGTNPQRSHSSQMLGDQMFNTSGM 479

Query: 95  MNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQQQMRQSSMQ 134
           M T    QQTQ QQ QQ QQ QQ+     +  +QQ L    M Q++ Q
Sbjct: 480 MQT----QQTQIQQSQQQQQQQQQGGYGNMQTNQQSLQPNNMMQNAQQ 518

[Close]

BLAST of Cla010949 vs. Swiss-Prot
Match: MED12_DICDI (Putative mediator of RNA polymerase II transcription subunit 12 OS=Dictyostelium discoideum GN=med12 PE=3 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-08
Identity = 43/105 (40.95%), Postives = 51/105 (48.57%), Query Frame = 1


Query: 25   KNTPLTSNNISGQGSLIQQPPGSQLVGRSAASPSGATSATSFDNTTSPLPYANSPRSSAN 84
            K     S N +     I  PP   LV  S+ S +     TS  +TTSP+    +P S+ N
Sbjct: 2282 KQLSFLSTNPTSLPFTIIHPP--TLVNTSSVSSTN----TSIQSTTSPIIAPVTPPSNFN 2341

Query: 85   IMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQQQMRQ 130
            +    S QQQ QQQQQQ  QQ QQ Q+  Q PQ QQ   QQQ +Q
Sbjct: 2342 LQQQTSQQQQQQQQQQQ--QQSQQHQQQQQTPQQQQQSQQQQQQQ 2378

HSP 2 Score: 45.4 bits (106), Expect = 5.9e-04
Identity = 25/57 (43.86%), Postives = 30/57 (52.63%), Query Frame = 1


Query: 73  LPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQQQMRQ 130
           +P A + +     +     QQQ QQQQQQQ QQ QQ+Q+  Q PQ  Q   QQQ +Q
Sbjct: 262 VPLAQTQQQQTAPIQQLQQQQQLQQQQQQQQQQQQQQQQQQQQPQQVQQPQQQQQQQ 318

HSP 3 Score: 42.4 bits (98), Expect = 5.0e-03
Identity = 24/51 (47.06%), Postives = 29/51 (56.86%), Query Frame = 1


Query: 92  QQQTQQQQQQQLQQVQQRQKLMQLPQHQQ---------LLAQQQMRQSSMQ 134
           QQQ QQQQQQQ QQ QQ+Q+  Q  QHQQ         ++ QQ ++Q  +Q
Sbjct: 158 QQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQPIQQQHIVQQQPIQQQPIQ 208

HSP 4 Score: 41.6 bits (96), Expect = 8.5e-03
Identity = 39/131 (29.77%), Postives = 53/131 (40.46%), Query Frame = 1


Query: 13   VQSFNETSGMYTKNTPLTSNNISGQGSLIQQPPGSQLVGRSAASPSGATSATSFD----N 72
            ++S   +  M   N P+    ++ + S +Q+    Q   +  + PS  T  TS       
Sbjct: 2442 IKSSFPSKNMALVNEPVDQKLLAQRKSQVQEIEKQQQQQQIKSQPS--TPLTSLPPQQHQ 2501

Query: 73   TTSPLPYANSPRSSANIMNTPSPQQ------QTQQQQQQQLQQVQQRQKLMQLPQHQQLL 132
               P P     + +        PQQ      QTQQQQQQQ QQ QQ+Q+  Q  Q Q+  
Sbjct: 2502 QLQPPPPQLQQQLNQQQQRQQPPQQLQQQKPQTQQQQQQQQQQQQQQQQQQQQQQTQKQP 2561

Query: 133  AQQQMRQSSMQ 134
             Q Q  Q S Q
Sbjct: 2562 QQPQQPQQSQQ 2570

HSP 5 Score: 41.2 bits (95), Expect = 1.1e-02
Identity = 24/42 (57.14%), Postives = 22/42 (52.38%), Query Frame = 1


Query: 92   QQQTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQQQMRQSSMQ 134
            QQQ QQQQQQQ QQ QQ QK  Q PQ  Q   Q Q  Q   Q
Sbjct: 2538 QQQQQQQQQQQQQQQQQTQKQPQQPQQPQQSQQFQQYQQFEQ 2579

HSP 6 Score: 40.8 bits (94), Expect = 1.5e-02
Identity = 26/50 (52.00%), Postives = 30/50 (60.00%), Query Frame = 1


Query: 92   QQQTQQQQ-QQQLQQVQQRQKLMQLPQHQQLLAQQQMRQSSMQGIGQVTL 141
            QQQ QQQQ QQQ+QQ QQ+Q+L QL Q QQ   QQQ  + +   + Q  L
Sbjct: 2638 QQQLQQQQLQQQIQQQQQQQQLQQLIQPQQF--QQQNLKRNFNNLSQPPL 2685

HSP 7 Score: 40.4 bits (93), Expect = 1.9e-02
Identity = 21/50 (42.00%), Postives = 28/50 (56.00%), Query Frame = 1


Query: 91   PQQQTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQQQMRQSSMQGIGQVTL 141
            PQQ  Q QQ QQ QQ +Q+Q+ +Q   +QQ + Q Q +Q + Q + Q  L
Sbjct: 2562 PQQPQQSQQFQQYQQFEQQQQALQFHLNQQKMQQLQPQQLNQQQLNQQQL 2611

HSP 8 Score: 40.4 bits (93), Expect = 1.9e-02
Identity = 31/92 (33.70%), Postives = 39/92 (42.39%), Query Frame = 1


Query: 39  SLIQQPPGSQLVGRSAAS-PSGATSATSFDNTTSPLPYANSPRSSANIMNTPSPQQQTQQ 98
           S IQQP   Q + +     P     A +    T+P+      +           QQQ QQ
Sbjct: 240 SQIQQPLQQQQIQQQQIPLPQQVPLAQTQQQQTAPIQQLQQQQQLQQ-------QQQQQQ 299

Query: 99  QQQQQLQQVQQRQKLMQLPQHQQLLAQQQMRQ 130
           QQQQQ QQ QQ+ + +Q PQ QQ   Q   R+
Sbjct: 300 QQQQQQQQQQQQPQQVQQPQQQQQQQQPVARR 324

HSP 9 Score: 40.0 bits (92), Expect = 2.5e-02
Identity = 20/44 (45.45%), Postives = 23/44 (52.27%), Query Frame = 1


Query: 92   QQQTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQQQMRQSSMQGI 136
            QQQ QQQQQQQ QQ Q++ +  Q PQ  Q   Q Q  +   Q +
Sbjct: 2541 QQQQQQQQQQQQQQTQKQPQQPQQPQQSQQFQQYQQFEQQQQAL 2584

HSP 10 Score: 38.9 bits (89), Expect = 5.5e-02
Identity = 21/44 (47.73%), Postives = 25/44 (56.82%), Query Frame = 1


Query: 92   QQQTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQQQMRQSSMQGI 136
            QQQ QQ +QQQLQQ Q +Q++ Q  Q QQL    Q +Q   Q +
Sbjct: 2630 QQQQQQLKQQQLQQQQLQQQIQQQQQQQQLQQLIQPQQFQQQNL 2673

HSP 11 Score: 38.9 bits (89), Expect = 5.5e-02
Identity = 21/46 (45.65%), Postives = 25/46 (54.35%), Query Frame = 1


Query: 92  QQQTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQQQMRQSSMQGIGQ 138
           QQQ QQQ QQQ Q +QQ+  + Q P  QQ + Q  ++Q   Q I Q
Sbjct: 177 QQQQQQQHQQQQQPIQQQHIVQQQPIQQQPIQQHIVQQPIQQQIQQ 222

HSP 12 Score: 34.7 bits (78), Expect = 1.0e+00
Identity = 24/52 (46.15%), Postives = 26/52 (50.00%), Query Frame = 1


Query: 92   QQQTQQQQQQQLQQVQQRQKL---MQLPQHQQLLAQQQMRQSSMQGIGQVTL 141
            Q Q QQ  QQQL Q Q  Q+L    QL Q Q  L QQQ +Q   Q + Q  L
Sbjct: 2595 QLQPQQLNQQQLNQQQLNQQLNQQQQLNQQQFQLHQQQQQQLKQQQLQQQQL 2646

HSP 13 Score: 34.3 bits (77), Expect = 1.4e+00
Identity = 23/60 (38.33%), Postives = 33/60 (55.00%), Query Frame = 1


Query: 58   SGATSATSFDNTTSPLPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQ 117
            S ++S+T+  +TTS  P  +SP ++         QQQ QQQQQQ  Q+   ++KL +L Q
Sbjct: 2211 SSSSSSTTTTSTTST-PVTSSPSTTTTATTN---QQQQQQQQQQADQKNNVKKKLHELYQ 2266

HSP 14 Score: 31.2 bits (69), Expect = 1.2e+01
Identity = 17/38 (44.74%), Postives = 19/38 (50.00%), Query Frame = 1


Query: 100 QQQLQQVQQRQKLMQLPQHQQLLAQQQMRQSSMQGIGQ 138
           QQ LQQ QQ  +  Q   HQQ + QQQM+Q     + Q
Sbjct: 5   QQILQQQQQMIQQQQQQLHQQQMQQQQMQQQQQHHMQQ 42

HSP 15 Score: 26.6 bits (57), Expect = 2.8e+02
Identity = 17/42 (40.48%), Postives = 22/42 (52.38%), Query Frame = 1


Query: 68   NTTSPLPYA--NSPRSSANIMN-----TPSPQQQTQQQQQQQ 103
            +TTSPL  +   SP   +  +N     +P+ +Q  QQQQQQQ
Sbjct: 1895 STTSPLTKSPSQSPTLQSQDLNSTNSTSPTSKQSQQQQQQQQ 1936

[Close]

BLAST of Cla010949 vs. Swiss-Prot
Match: MED13_DICDI (Mediator of RNA polymerase II transcription subunit 13 OS=Dictyostelium discoideum GN=amiB PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-07
Identity = 38/95 (40.00%), Postives = 47/95 (49.47%), Query Frame = 1


Query: 53   SAASPSGATSATSFDNTTSP--------LPYANSPRSSANIMNTPSPQQQTQQQQQQQLQ 112
            +  +P+ AT  T  DN  +P        +   + P+S   +   P PQQQ QQQQQQQ Q
Sbjct: 941  TTTTPTAAT--TGNDNFLAPQSKPPPSNIQETSQPQSLTTVQPQPPPQQQQQQQQQQQQQ 1000

Query: 113  QVQQRQKLMQLPQHQQLLAQQQMRQ---SSMQGIG 137
            Q QQ+Q+  Q  Q QQ   QQQ +Q   SS  G G
Sbjct: 1001 QQQQQQQQQQQQQQQQQQQQQQQQQQVVSSFSGQG 1033

HSP 2 Score: 40.0 bits (92), Expect = 2.5e-02
Identity = 33/124 (26.61%), Postives = 53/124 (42.74%), Query Frame = 1


Query: 10   GDGVQSFNETSGMYTKNTPLTSNN------ISGQGSLIQQPPGSQLVGRSAASPSGATSA 69
            G     + E+  MYT N P+  NN      ++   + I  P  +  V  S ++ SG+   
Sbjct: 2477 GQSFAIYPESPIMYTYNFPMNDNNDDYNSILNNNNNNILPPLSTSFVITSPSNLSGSVLT 2536

Query: 70   TSFDNTTSPLPYANSPRSSAN-----IMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQH 123
             +  N+       N+ +S        +++    Q    QQQQQQ QQ QQ+Q+   +  H
Sbjct: 2537 PTTTNSN----VINNNQSKKEWPFTYMLSIVGIQSLQHQQQQQQQQQQQQQQQHPNIINH 2596

HSP 3 Score: 37.4 bits (85), Expect = 1.6e-01
Identity = 27/70 (38.57%), Postives = 36/70 (51.43%), Query Frame = 1


Query: 60   ATSATSFDNTTSPLPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQHQ 119
            AT+ T+   TT+P P   +P ++     T  PQ Q QQQ QQQ QQ QQ   +  LP + 
Sbjct: 1108 ATTTTTTTTTTTPTP---NPTTT-----TTQPQTQPQQQSQQQ-QQPQQTNPI--LPTNS 1166

Query: 120  QLLAQQQMRQ 130
             L+  Q+ +Q
Sbjct: 1168 NLITNQKPQQ 1166

[Close]

BLAST of Cla010949 vs. Swiss-Prot
Match: BZPR_DICDI (Probable basic-leucine zipper transcription factor R OS=Dictyostelium discoideum GN=bzpR PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.5e-07
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 1


Query: 70  TSPLPYANSPRSSANIMNTPSP---QQQTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQQQ 129
           +S +P  + P S  +  + PSP   QQQ QQQQQQQ QQ QQ+Q+  Q  Q QQ L QQQ
Sbjct: 481 SSFIPPPSLPSSPPSPPSPPSPPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQQQQ 540

Query: 130 MRQSSMQ 134
           ++Q  +Q
Sbjct: 541 LQQQQLQ 547

HSP 2 Score: 33.9 bits (76), Expect = 1.8e+00
Identity = 27/106 (25.47%), Postives = 46/106 (43.40%), Query Frame = 1


Query: 28  PLTSNNISGQGSLIQQPPGSQLVGRSAASPSGATSATSFDNTTSPLPYANSPRSSANIMN 87
           P+T+NN +   +       +     S ++ +  +++ S  N+ S     N+   + NI  
Sbjct: 155 PITNNNNNNNNNNNNNNNNNNSNSNSNSNSNSNSNSNSNSNSNS-----NNNNINNNICI 214

Query: 88  TPSPQQQTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQQQMRQSSMQ 134
             +         Q QLQ +QQ+Q+  Q  Q QQ   QQQ +Q   Q
Sbjct: 215 NNNDISIFLLNNQIQLQPLQQQQQQQQQQQQQQQQQQQQQQQQQQQ 255

HSP 3 Score: 31.2 bits (69), Expect = 1.2e+01
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 1


Query: 94  QTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQQQMRQSSM 133
           Q QQ Q QQL++ +++Q+   L Q QQL  QQ+  Q  +
Sbjct: 340 QLQQLQLQQLEEEKRQQQKQLLLQQQQLQEQQEKLQQQL 378

HSP 4 Score: 30.4 bits (67), Expect = 2.0e+01
Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = 1


Query: 92  QQQTQQQQQQQLQQVQQRQKLMQLPQHQQ 121
           Q+  QQ+QQ Q QQ QQ+Q+ +Q+P   Q
Sbjct: 388 QKVKQQKQQHQKQQPQQQQQSIQIPPELQ 416

HSP 5 Score: 29.3 bits (64), Expect = 4.4e+01
Identity = 18/57 (31.58%), Postives = 22/57 (38.60%), Query Frame = 1


Query: 77  NSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQQQMRQSSMQ 134
           N+   S  IMN          Q  ++LQ +QQ+Q   Q    QQL   QQ  +   Q
Sbjct: 73  NNNIGSPQIMNENIETNSNDPQYLERLQSIQQQQHQCQTQIQQQLQNYQQQYEDQYQ 129

HSP 6 Score: 28.5 bits (62), Expect = 7.5e+01
Identity = 17/42 (40.48%), Postives = 23/42 (54.76%), Query Frame = 1


Query: 92  QQQTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQQQMRQSSMQ 134
           QQ+    QQQQLQ+ QQ +   QL Q Q+   +Q+++Q   Q
Sbjct: 356 QQKQLLLQQQQLQE-QQEKLQQQLLQQQKQQLKQKVKQQKQQ 396

HSP 7 Score: 27.7 bits (60), Expect = 1.3e+02
Identity = 17/43 (39.53%), Postives = 24/43 (55.81%), Query Frame = 1


Query: 93  QQTQQQQQQQLQQVQQRQKLMQLPQHQQLLAQ--QQMRQSSMQ 134
           ++ ++QQQ+QL   QQ+ +  Q    QQLL Q  QQ++Q   Q
Sbjct: 350 EEEKRQQQKQLLLQQQQLQEQQEKLQQQLLQQQKQQLKQKVKQ 392

[Close]

BLAST of Cla010949 vs. Swiss-Prot
Match: MED25_DROME (Mediator of RNA polymerase II transcription subunit 25 OS=Drosophila melanogaster GN=MED25 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.7e-07
Identity = 38/100 (38.00%), Postives = 44/100 (44.00%), Query Frame = 1


Query: 36  GQGSLIQQPPGSQLVGRSAASPSGATSATSFDNTTSPLPYANSPRSSANIMNTPSPQQQT 95
           GQG  +QQ P S L+ R  A P   T  TS              +           QQQ 
Sbjct: 376 GQGGGMQQNPNSALISRINAPPPNQT-VTSLQQ-----------QQQQQAQQQQQQQQQA 435

Query: 96  QQQQQQQLQQVQQRQKL--MQLPQHQQLLAQQQMRQSSMQ 134
           QQQQQQ++Q + Q+Q L   QL Q QQL  QQQ +Q   Q
Sbjct: 436 QQQQQQRMQMLSQQQMLNHQQLQQQQQLAQQQQQQQQGQQ 463

HSP 2 Score: 40.0 bits (92), Expect = 2.5e-02
Identity = 33/112 (29.46%), Postives = 42/112 (37.50%), Query Frame = 1


Query: 39  SLIQQPPGSQLVGRSAASPSGATSATSFDNTTSPLPYANSPRSSANIMNTPSPQQQTQQQ 98
           SL ++ P    +    A+P+ A +                 +     M+T   QQQ QQQ
Sbjct: 219 SLKERAPSPNSMAAQMAAPNAAQATVQQQQQQQQNQAGQQQQGQGMPMDTTPAQQQQQQQ 278

Query: 99  QQQQLQQ--------------VQQRQK-------LMQLPQHQQLLAQQQMRQ 130
           QQQQ QQ              +QQ+Q        L+   Q QQLL QQQ  Q
Sbjct: 279 QQQQQQQQQGNPQQQVMNMNTMQQQQPGPNPPAGLLNPQQQQQLLQQQQQNQ 330

HSP 3 Score: 28.9 bits (63), Expect = 5.7e+01
Identity = 22/58 (37.93%), Postives = 22/58 (37.93%), Query Frame = 1


Query: 87  NTPSPQQQTQQQQQ--------QQLQQVQQRQKLMQLPQHQQLLAQQQMRQSSMQGIG 137
           N    QQQ Q  QQ        QQ QQ QQ+Q+ MQ    QQ    Q      M G G
Sbjct: 673 NMQQQQQQQQMMQQQGKSPMELQQQQQQQQQQQQMQQDNSQQQHYNQFQLNMQMGGGG 730

[Close]

BLAST of Cla010949 vs. TrEMBL
Match: A0A067DQX3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008451mg PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-48
Identity = 104/143 (72.73%), Postives = 121/143 (84.62%), Query Frame = 1


Query: 1   MHLIDVLNVGDGVQSFNETSGMYTKNT-PLTSNNISGQGSLIQQPPGSQLVGRSAASPSG 60
           MHL+D+L VGDGV +F++ SGMY KNT PL+SN+I  QG+L+ Q  G+QL+GRSAASPS 
Sbjct: 235 MHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLL-QASGAQLIGRSAASPSA 294

Query: 61  ATSATSFDNTT-SPLPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQH 120
           ATSATSFDNTT SP+PYANSPRS  N+MNTPSPQQQ QQQQQQQ QQ QQRQK+MQLP  
Sbjct: 295 ATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQ 354

Query: 121 QQLLAQQQMRQSSMQGIGQVTLL 142
           QQLLAQQQ RQS MQG+GQ++ L
Sbjct: 355 QQLLAQQQFRQSQMQGLGQMSQL 376

[Close]

BLAST of Cla010949 vs. TrEMBL
Match: A0A067DLU8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008451mg PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.7e-48
Identity = 103/140 (73.57%), Postives = 119/140 (85.00%), Query Frame = 1


Query: 1   MHLIDVLNVGDGVQSFNETSGMYTKNT-PLTSNNISGQGSLIQQPPGSQLVGRSAASPSG 60
           MHL+D+L VGDGV +F++ SGMY KNT PL+SN+I  QG+L+ Q  G+QL+GRSAASPS 
Sbjct: 235 MHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLL-QASGAQLIGRSAASPSA 294

Query: 61  ATSATSFDNTT-SPLPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQH 120
           ATSATSFDNTT SP+PYANSPRS  N+MNTPSPQQQ QQQQQQQ QQ QQRQK+MQLP  
Sbjct: 295 ATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQ 354

Query: 121 QQLLAQQQMRQSSMQGIGQV 139
           QQLLAQQQ RQS MQG+GQ+
Sbjct: 355 QQLLAQQQFRQSQMQGLGQL 373

[Close]

BLAST of Cla010949 vs. TrEMBL
Match: A0A067DZC4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008451mg PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.6e-48
Identity = 103/139 (74.10%), Postives = 118/139 (84.89%), Query Frame = 1


Query: 1   MHLIDVLNVGDGVQSFNETSGMYTKNT-PLTSNNISGQGSLIQQPPGSQLVGRSAASPSG 60
           MHL+D+L VGDGV +F++ SGMY KNT PL+SN+I  QG+L+ Q  G+QL+GRSAASPS 
Sbjct: 235 MHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLL-QASGAQLIGRSAASPSA 294

Query: 61  ATSATSFDNTT-SPLPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQH 120
           ATSATSFDNTT SP+PYANSPRS  N+MNTPSPQQQ QQQQQQQ QQ QQRQK+MQLP  
Sbjct: 295 ATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQ 354

Query: 121 QQLLAQQQMRQSSMQGIGQ 138
           QQLLAQQQ RQS MQG+GQ
Sbjct: 355 QQLLAQQQFRQSQMQGLGQ 372

[Close]

BLAST of Cla010949 vs. TrEMBL
Match: A0A061GA94_THECC (Mediator subunit 8 isoform 1 OS=Theobroma cacao GN=TCM_027824 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.8e-47
Identity = 105/144 (72.92%), Postives = 118/144 (81.94%), Query Frame = 1


Query: 1   MHLIDVLNVGDGVQSFNETSGMYTKNTPLTSNNISGQGSLIQQPPGSQLVGRSAASPSGA 60
           +HL D++   DGV SF++ SGMY KNTPLTS+NI  QGSL+ Q  G+QL+GRSAASPS A
Sbjct: 231 LHLADIMPAADGVHSFSDPSGMYMKNTPLTSSNIGSQGSLV-QASGAQLIGRSAASPSAA 290

Query: 61  TSATSFDNTT-SPLPYANSPRSSANIMNTPSPQQQT------QQQQQQQLQQVQQRQKLM 120
           TSATSFDNTT SPLPYANSPRS  N+MNTPSPQQQT      QQQQQQQ QQ QQRQK+M
Sbjct: 291 TSATSFDNTTNSPLPYANSPRSGTNMMNTPSPQQQTQQQQQQQQQQQQQQQQQQQRQKMM 350

Query: 121 QLPQHQQLLAQQQMRQSSMQGIGQ 138
           QLPQH QLLAQQQ RQS+MQG+GQ
Sbjct: 351 QLPQH-QLLAQQQFRQSTMQGLGQ 372

[Close]

BLAST of Cla010949 vs. TrEMBL
Match: A0A061GGZ8_THECC (Mediator subunit 8 isoform 2 OS=Theobroma cacao GN=TCM_027824 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.8e-47
Identity = 105/144 (72.92%), Postives = 118/144 (81.94%), Query Frame = 1


Query: 1   MHLIDVLNVGDGVQSFNETSGMYTKNTPLTSNNISGQGSLIQQPPGSQLVGRSAASPSGA 60
           +HL D++   DGV SF++ SGMY KNTPLTS+NI  QGSL+ Q  G+QL+GRSAASPS A
Sbjct: 231 LHLADIMPAADGVHSFSDPSGMYMKNTPLTSSNIGSQGSLV-QASGAQLIGRSAASPSAA 290

Query: 61  TSATSFDNTT-SPLPYANSPRSSANIMNTPSPQQQT------QQQQQQQLQQVQQRQKLM 120
           TSATSFDNTT SPLPYANSPRS  N+MNTPSPQQQT      QQQQQQQ QQ QQRQK+M
Sbjct: 291 TSATSFDNTTNSPLPYANSPRSGTNMMNTPSPQQQTQQQQQQQQQQQQQQQQQQQRQKMM 350

Query: 121 QLPQHQQLLAQQQMRQSSMQGIGQ 138
           QLPQH QLLAQQQ RQS+MQG+GQ
Sbjct: 351 QLPQH-QLLAQQQFRQSTMQGLGQ 372

[Close]

BLAST of Cla010949 vs. NCBI nr
Match: gi|778682360|ref|XP_011651696.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 8.1e-62
Identity = 122/138 (88.41%), Postives = 131/138 (94.93%), Query Frame = 1


Query: 1   MHLIDVLNVGDGVQSFNETSGMYTKNTPLTSNNISGQGSLIQQPPGSQLVGRSAASPSGA 60
           MHLIDVLN GDGVQSFNETSGMY K+TPLTSNNIS QG++IQQPPGSQLVGRSAASPSGA
Sbjct: 233 MHLIDVLNAGDGVQSFNETSGMYAKSTPLTSNNISSQGAVIQQPPGSQLVGRSAASPSGA 292

Query: 61  TSATSFDNTTSPLPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQHQQ 120
           TSATSFDN+TSP+PYANSPRSSAN+MNTPSPQQQTQQQQQQQLQQVQQR+  + LPQHQ 
Sbjct: 293 TSATSFDNSTSPMPYANSPRSSANVMNTPSPQQQTQQQQQQQLQQVQQRK--LMLPQHQH 352

Query: 121 LLAQQQMRQSSMQGIGQV 139
           LLAQQQMRQSSMQGIGQ+
Sbjct: 353 LLAQQQMRQSSMQGIGQI 368

[Close]

BLAST of Cla010949 vs. NCBI nr
Match: gi|659130301|ref|XP_008465097.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cucumis melo])

HSP 1 Score: 245.0 bits (624), Expect = 8.1e-62
Identity = 123/138 (89.13%), Postives = 131/138 (94.93%), Query Frame = 1


Query: 1   MHLIDVLNVGDGVQSFNETSGMYTKNTPLTSNNISGQGSLIQQPPGSQLVGRSAASPSGA 60
           MHLIDVLN GDGVQSFNETSGMY K+TPLTS NIS QG++IQQPPGSQLVGRSAASPSGA
Sbjct: 233 MHLIDVLNAGDGVQSFNETSGMYAKSTPLTSTNISSQGAVIQQPPGSQLVGRSAASPSGA 292

Query: 61  TSATSFDNTTSPLPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQHQQ 120
           TSATSFDN+TSP+PYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQR+  + LPQHQQ
Sbjct: 293 TSATSFDNSTSPMPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRK--LMLPQHQQ 352

Query: 121 LLAQQQMRQSSMQGIGQV 139
           LLAQQQMRQSSMQGIGQ+
Sbjct: 353 LLAQQQMRQSSMQGIGQI 368

[Close]

BLAST of Cla010949 vs. NCBI nr
Match: gi|449453344|ref|XP_004144418.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 7.6e-60
Identity = 121/138 (87.68%), Postives = 130/138 (94.20%), Query Frame = 1


Query: 1   MHLIDVLNVGDGVQSFNETSGMYTKNTPLTSNNISGQGSLIQQPPGSQLVGRSAASPSGA 60
           MHLIDVLN GDGVQSFNETSGMY K+TPLTSNNIS QG++IQ PPGSQLVGRSAASPSGA
Sbjct: 233 MHLIDVLNAGDGVQSFNETSGMYAKSTPLTSNNISSQGAVIQ-PPGSQLVGRSAASPSGA 292

Query: 61  TSATSFDNTTSPLPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQHQQ 120
           TSATSFDN+TSP+PYANSPRSSAN+MNTPSPQQQTQQQQQQQLQQVQQR+  + LPQHQ 
Sbjct: 293 TSATSFDNSTSPMPYANSPRSSANVMNTPSPQQQTQQQQQQQLQQVQQRK--LMLPQHQH 352

Query: 121 LLAQQQMRQSSMQGIGQV 139
           LLAQQQMRQSSMQGIGQ+
Sbjct: 353 LLAQQQMRQSSMQGIGQI 367

[Close]

BLAST of Cla010949 vs. NCBI nr
Match: gi|659130303|ref|XP_008465098.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cucumis melo])

HSP 1 Score: 238.4 bits (607), Expect = 7.6e-60
Identity = 122/138 (88.41%), Postives = 130/138 (94.20%), Query Frame = 1


Query: 1   MHLIDVLNVGDGVQSFNETSGMYTKNTPLTSNNISGQGSLIQQPPGSQLVGRSAASPSGA 60
           MHLIDVLN GDGVQSFNETSGMY K+TPLTS NIS QG++IQ PPGSQLVGRSAASPSGA
Sbjct: 233 MHLIDVLNAGDGVQSFNETSGMYAKSTPLTSTNISSQGAVIQ-PPGSQLVGRSAASPSGA 292

Query: 61  TSATSFDNTTSPLPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQHQQ 120
           TSATSFDN+TSP+PYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQR+  + LPQHQQ
Sbjct: 293 TSATSFDNSTSPMPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRK--LMLPQHQQ 352

Query: 121 LLAQQQMRQSSMQGIGQV 139
           LLAQQQMRQSSMQGIGQ+
Sbjct: 353 LLAQQQMRQSSMQGIGQI 367

[Close]

BLAST of Cla010949 vs. NCBI nr
Match: gi|641824650|gb|KDO43970.1| (hypothetical protein CISIN_1g008451mg [Citrus sinensis])

HSP 1 Score: 200.7 bits (509), Expect = 1.8e-48
Identity = 104/143 (72.73%), Postives = 121/143 (84.62%), Query Frame = 1


Query: 1   MHLIDVLNVGDGVQSFNETSGMYTKNT-PLTSNNISGQGSLIQQPPGSQLVGRSAASPSG 60
           MHL+D+L VGDGV +F++ SGMY KNT PL+SN+I  QG+L+ Q  G+QL+GRSAASPS 
Sbjct: 235 MHLVDLLPVGDGVHTFSDASGMYMKNTPPLSSNSIGNQGNLL-QASGAQLIGRSAASPSA 294

Query: 61  ATSATSFDNTT-SPLPYANSPRSSANIMNTPSPQQQTQQQQQQQLQQVQQRQKLMQLPQH 120
           ATSATSFDNTT SP+PYANSPRS  N+MNTPSPQQQ QQQQQQQ QQ QQRQK+MQLP  
Sbjct: 295 ATSATSFDNTTASPVPYANSPRSGTNMMNTPSPQQQQQQQQQQQQQQQQQRQKMMQLPHQ 354

Query: 121 QQLLAQQQMRQSSMQGIGQVTLL 142
           QQLLAQQQ RQS MQG+GQ++ L
Sbjct: 355 QQLLAQQQFRQSQMQGLGQMSQL 376

The following BLAST results are available for this feature:

BLAST of Cla010949 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED8_ARATH	1.7e-27	57.14	Mediator of RNA polymerase II transcription subunit 8 OS=Arabidopsis thaliana GN...	[more]
MED12_DICDI	4.0e-08	40.95	Putative mediator of RNA polymerase II transcription subunit 12 OS=Dictyostelium...	[more]
MED13_DICDI	2.6e-07	40.00	Mediator of RNA polymerase II transcription subunit 13 OS=Dictyostelium discoide...	[more]
BZPR_DICDI	7.5e-07	47.76	Probable basic-leucine zipper transcription factor R OS=Dictyostelium discoideum...	[more]
MED25_DROME	9.7e-07	38.00	Mediator of RNA polymerase II transcription subunit 25 OS=Drosophila melanogaste...	[more]

BLAST of Cla010949 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067DQX3_CITSI	1.2e-48	72.73	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008451mg PE=4 SV=1	[more]
A0A067DLU8_CITSI	2.7e-48	73.57	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008451mg PE=4 SV=1	[more]
A0A067DZC4_CITSI	3.6e-48	74.10	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g008451mg PE=4 SV=1	[more]
A0A061GA94_THECC	1.8e-47	72.92	Mediator subunit 8 isoform 1 OS=Theobroma cacao GN=TCM_027824 PE=4 SV=1	[more]
A0A061GGZ8_THECC	1.8e-47	72.92	Mediator subunit 8 isoform 2 OS=Theobroma cacao GN=TCM_027824 PE=4 SV=1	[more]

BLAST of Cla010949 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778682360\|ref\|XP_011651696.1\|	8.1e-62	88.41	PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cuc...	[more]
gi\|659130301\|ref\|XP_008465097.1\|	8.1e-62	89.13	PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X1 [Cuc...	[more]
gi\|449453344\|ref\|XP_004144418.1\|	7.6e-60	87.68	PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cuc...	[more]
gi\|659130303\|ref\|XP_008465098.1\|	7.6e-60	88.41	PREDICTED: mediator of RNA polymerase II transcription subunit 8 isoform X2 [Cuc...	[more]
gi\|641824650\|gb\|KDO43970.1\|	1.8e-48	72.73	hypothetical protein CISIN_1g008451mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009887	animal organ morphogenesis
biological_process	GO:0031048	chromatin silencing by small RNA
biological_process	GO:0008150	biological_process
biological_process	GO:0009888	tissue development
biological_process	GO:0043247	telomere maintenance in response to DNA damage
biological_process	GO:0007062	sister chromatid cohesion
biological_process	GO:0006396	RNA processing
biological_process	GO:0010332	response to gamma radiation
biological_process	GO:0032204	regulation of telomere maintenance
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0010638	positive regulation of organelle organization
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0042138	meiotic DNA double-strand break formation
biological_process	GO:0045132	meiotic chromosome segregation
biological_process	GO:0050832	defense response to fungus
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010949	Cla010949.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35552	FAMILY NOT NAMED	coord: 1..143 score: 2.8
None	No IPR available	PANTHER	PTHR35552:SF1	SUBFAMILY NOT NAMED	coord: 1..143 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010949	ClCG07G014640	Watermelon (Charleston Gray)	wcgwmB372
Cla010949	CmaCh14G011860	Cucurbita maxima (Rimu)	cmawmB234
Cla010949	CmoCh14G012100	Cucurbita moschata (Rifu)	cmowmB220
Cla010949	Lsi07G006770	Bottle gourd (USVL1VR-Ls)	lsiwmB444
Cla010949	Cp4.1LG03g15010	Cucurbita pepo (Zucchini)	cpewmB602

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010949	Watermelon (97103) v2	wmwmbB174
Cla010949	Wax gourd	wgowmB191