Cla010765 (gene) Watermelon (97103) v1

Overview
NameCla010765
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionDNA ligase (AHRD V1 **** F6HSN4_VITVI); contains Interpro domain(s) IPR012310 ATP dependent DNA ligase, central
LocationChr7 : 29658774 .. 29661704 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCAGGAATACCTATTAAGCCAATGCTCGCAAAGTACATTTATGGGCTAATTATAACATTCATCATTTTTATCAATAATTGTTTTTTATATAATTGTAATTTGGGTCATTGTTTGTTTTTGGTACTGTAGGATTACCAACGGTATTTCTCAAGCATTGAAAATTTTTGAGAATAAAGCTTTTACATGTGAATACAAGTGAGTCCTCTTCTCTTCGATTGTTTCTTTTAACTCAGTCCTTGTATGCATGCATTTTTTGTGATCTTTGTCTTGTTGATCAGCTCATGAATCGTGCTTCTTAAGAAATTTATTGCAAACCATGTTATGTATTTCTCTTTGGCAATTAGATGAACTTGGATTAATGGTGATTTTATTTGGAAACCTATATAATTTTTTATAAACAAGATCGAACTTCTCATTGTAATTAAAAGATACAAAAATGTTGACACCCAAATGTTGTAGGGTCAGGCGGGTTCTTCCGTGAGATTAGTCGAGTGTGTGTAAGTTGGGCTGGACTCTCTCGGATAAAAAAGAAAAAAAAACAAAAATGTTAGAGAGACTATGGTTCCATCTTTAAAAGCCTAAAGTACATGTATAAACTCCATGAATTAGTGCAAATGAGAGAGGAGAGAGGACAAGCAGTAGCACAAAAGGCGAATGCATGCGTAGAAATTAAAATTAGAGGGTGAGGGAGAGAATCATTGTTCTCGGACTCTTATTGCAACTTTTATTGTTCTGGAATAGCACATTTATGTAACTTAGACTTAGGGTGTGTTGGTTAGTGATTTTAAAATAAAAAAATTAAAACTAAGCTTTAATAAAAAATAGAGCTGTATTTTATGTTTTCAATGTTTTCAAGTATGCATTGAGTATAGACTTTAAAACTACATCTCAAAGTTTTCAATTAGGTGTTTAATATAAATTTAAAAAATTGATCTCAATTTAGTCCATGGTTAAAAATGTATTTCGTATTATACTTATAAACTCTTCACTCAAACAGAATCCAGCTGTTCAAAAATAAATCCACTATACATCTTTGCATTTTCCACTTTATTTAAGTTTTCTTTTTATGTATCTAGATATGATGGTCAGCGTGCACAAATTCACAAATTGGCTGATGGTTCTGTGCGAGTTTTCTCTCGGAACAGTGATGATACTACGTCAAAATTCCCAGATTTGATCAAGATAATTAATGAATTATGTAAACCTGCTGCCTCAACTTTCATACTGGACGCTGAGGTAAGAGCTTGCTGTTGGTCGCTGTTTGAACCTTTATCTTATGAACTCTTTTATCATTTCTGTTGGTTGACAATACTTCTTCACTACAAAATGATATTTTTCTACTGCATTCTCTAGGTCGTTGCTGTTGATAGGAAAAATAATTGCAGACTAATGTCTTTCCAAGAATTATCATCACGTGGGAGAGGGAGCAAAGGCTCCCTGATTGCTGTTGATAGCATAAAGGTCTGGTATATCGTTACTTTTTAGTTTTACCTGACATGGATTGTTGCTCTGTAGCACCAATAGCAATGTATAGCATGTCCTTTTAATGTTCTCTAAAGTACGGACGGAAGACTATCTAGCATTATGATTTTTAGCTACCATTTTGTACAGTGAAGTGTCATGATTTTTCTCCCCTTGCTCCTTGTTTTGGAATAACATAAGAGAGAAGTATCATTTTTTCTTTTTTGCTTGTGCCGTTTTGGAGCTTCTCTTGTTTCAAAATTCAAAATTCAAAATTATAACGATACTTGAAATTGAGCAAGTTGTTTATTTTCATTTATTCTTCTGCTGAAATGTGGTTTTCTTATTTATTTATTTATTATTATTTATGTATCCATCATTATCAAACCAAATGTGCAACTATCAAAACTAATTCTGGACATCATTTGAGAAATCTAGGGATCATTTTATTTCTTTCTCATTGAACTGAATCTGTTTTCGTTAGATTAGCATCTCCATACTAGGACTAAGCATGGCCTAACTACTTCTGTGGATGCTATGCTAATGTTAAAAAGTTGAACAGAGTTTAGTGGACAGATGTCTGTCTCTTACTTGGATATCTATGTTCCACTTTATGGTTGATTCATTGTGTAAACGAGATAACTTCTTATTTATTTTATTTATATCGTTCAACCAGTTCTCTAATAGCCATGCCTGTACAAAATATAACAGGAAAGAGAGAGGGTAGGGTAGATACGAGGAAGAAAATGCAAAATTAAAAAGGAAAGACAGTTATAAACTATACAAAAAGGAATGTGCTTAAGATTAATTAATACTAAAAAGTAAATGGGCCTAAAGATAGAGTCTTAGTAAACGTTCTAAAACATATCTGCCATATGACACTTTTTATTTTTTTGGTTTCGTTTTGGAACCAATCATTTTTCTGTAACATCCACCCTGAAAAGTTTTTGTTGTACCCCATAGCTGCTGCATGCTGATAAAATGTTCAAATTTATCCTTTGCTCTAATACTTGTTTGTTTTTGCAGGTTGATATCTGTGTGTTTGTCTTTGACATCATGCTTGCCAATGGAGAGCAGTAATCATCTTTCAACACTCTCAATCTTCTCATAATTTCAAAGTTTTGAATTTTTTAATTTCTATTTAGAATACTAATGCAATAGGATTAAACTAAAGTAATAGTATGGTATTAGTAAGGGGTATAAGAGTAATTAAATAGGGAGTTAGTGCATCGTGTTATAAATAGGATGATGAGCGAGGGAAGGTAGGCAATTGTTGAGTTATCTCGGGTTTAGGTTAGCATACTCGGGAGAGGTTCCAAGTGCCTTTATACTTGGGTTATCTTATCGTCATTCCTTTATATAATTCTAGTTAGGAGGTATCCTAACAAACACTTGAATCAATTGGCTATCAGTGTCAATCATGGAATCGATACATTCTCCTTGCCTTTTGAGTTCAGCTTTTAA

mRNA sequence

ATGGTTTCAGGAATACCTATTAAGCCAATGCTCGCAAAGATTACCAACGGTATTTCTCAAGCATTGAAAATTTTTGAGAATAAAGCTTTTACATGTGAATACAAATATGATGGTCAGCGTGCACAAATTCACAAATTGGCTGATGGTTCTGTGCGAGTTTTCTCTCGGAACAGTGATGATACTACGTCAAAATTCCCAGATTTGATCAAGATAATTAATGAATTATGTAAACCTGCTGCCTCAACTTTCATACTGGACGCTGAGGTCGTTGCTGTTGATAGGAAAAATAATTGCAGACTAATGTCTTTCCAAGAATTATCATCACGTGGGAGAGGGAGCAAAGGCTCCCTGATTGCTGTTGATAGCATAAAGGTTGATATCTGTGTGTTTGTCTTTGACATCATGCTTGCCAATGGAGAGCAGAGGTATCCTAACAAACACTTGAATCAATTGGCTATCAGTGTCAATCATGGAATCGATACATTCTCCTTGCCTTTTGAGTTCAGCTTTTAA

Coding sequence (CDS)

ATGGTTTCAGGAATACCTATTAAGCCAATGCTCGCAAAGATTACCAACGGTATTTCTCAAGCATTGAAAATTTTTGAGAATAAAGCTTTTACATGTGAATACAAATATGATGGTCAGCGTGCACAAATTCACAAATTGGCTGATGGTTCTGTGCGAGTTTTCTCTCGGAACAGTGATGATACTACGTCAAAATTCCCAGATTTGATCAAGATAATTAATGAATTATGTAAACCTGCTGCCTCAACTTTCATACTGGACGCTGAGGTCGTTGCTGTTGATAGGAAAAATAATTGCAGACTAATGTCTTTCCAAGAATTATCATCACGTGGGAGAGGGAGCAAAGGCTCCCTGATTGCTGTTGATAGCATAAAGGTTGATATCTGTGTGTTTGTCTTTGACATCATGCTTGCCAATGGAGAGCAGAGGTATCCTAACAAACACTTGAATCAATTGGCTATCAGTGTCAATCATGGAATCGATACATTCTCCTTGCCTTTTGAGTTCAGCTTTTAA

Protein sequence

MVSGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDDTTSKFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAVDSIKVDICVFVFDIMLANGEQRYPNKHLNQLAISVNHGIDTFSLPFEFSF
Homology
[Close]
BLAST of Cla010765 vs. Swiss-Prot
Match: LIG6_ARATH (DNA ligase 6 OS=Arabidopsis thaliana GN=LIG6 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-49
Identity = 95/141 (67.38%), Postives = 112/141 (79.43%), Query Frame = 1 

Query: 1    MVSGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDD 60
            MV GIPIKPMLAKI  G+ +   + + KAFTCEYKYDGQRAQIHKL DG+V +FSRN D+
Sbjct: 1005 MVPGIPIKPMLAKIAKGVQEFFNLSQEKAFTCEYKYDGQRAQIHKLLDGTVCIFSRNGDE 1064

Query: 61   TTSKFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAV 120
            TTS+FPDL+ +I +   PAA TF+LDAEVVA DR N  +LMSFQELS+R RGSK +LI  
Sbjct: 1065 TTSRFPDLVDVIKQFSCPAAETFMLDAEVVATDRINGNKLMSFQELSTRERGSKDALITT 1124

Query: 121  DSIKVDICVFVFDIMLANGEQ 142
            +SIKV++CVFVFDIM  NGEQ
Sbjct: 1125 ESIKVEVCVFVFDIMFVNGEQ 1145

[Close]
BLAST of Cla010765 vs. Swiss-Prot
Match: DNLI1_HUMAN (DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.0e-32
Identity = 73/150 (48.67%), Postives = 95/150 (63.33%), Query Frame = 1 

Query: 4   GIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDDTTS 63
           GIP+KPMLA  T GIS+ LK FE  AFTCEYKYDGQRAQIH L  G V++FSRN +D T 
Sbjct: 537 GIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTG 596

Query: 64  KFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAVDSI 123
           K+PD+I  I ++  P+ ++FILD E VA DR+   ++  FQ L++R R      +    I
Sbjct: 597 KYPDIISRIPKIKLPSVTSFILDTEAVAWDREKK-QIQPFQVLTTRKRKE----VDASEI 656

Query: 124 KVDICVFVFDIMLANGEQ--RYPNKHLNQL 152
           +V +C++ FD++  NGE   R P     QL
Sbjct: 657 QVQVCLYAFDLIYLNGESLVREPLSRRRQL 681

[Close]
BLAST of Cla010765 vs. Swiss-Prot
Match: DNLI1_ARATH (DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-31
Identity = 65/138 (47.10%), Postives = 95/138 (68.84%), Query Frame = 1 

Query: 4   GIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDDTTS 63
           G+PI PMLAK T G+++ L  F++  FTCEYKYDG+RAQIH + DG+  ++SRN++  T 
Sbjct: 413 GVPIGPMLAKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHFMEDGTFEIYSRNAERNTG 472

Query: 64  KFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAVDSI 123
           K+PD+   ++ L KP+  +FILD EVVA DR+   +++ FQ LS+R R +    + V+ I
Sbjct: 473 KYPDVALALSRLKKPSVKSFILDCEVVAFDREKK-KILPFQILSTRARKN----VNVNDI 532

Query: 124 KVDICVFVFDIMLANGEQ 142
           KV +C+F FD++  NG+Q
Sbjct: 533 KVGVCIFAFDMLYLNGQQ 545

[Close]
BLAST of Cla010765 vs. Swiss-Prot
Match: DNLI1_MOUSE (DNA ligase 1 OS=Mus musculus GN=Lig1 PE=1 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 6.7e-31
Identity = 70/150 (46.67%), Postives = 94/150 (62.67%), Query Frame = 1 

Query: 4   GIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDDTTS 63
           G+P+KPMLA  T G+S+ LK FE   FTCEYKYDGQRAQIH L  G V++FSRN +D T 
Sbjct: 535 GVPLKPMLAHPTRGVSEVLKRFEEVDFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTG 594

Query: 64  KFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAVDSI 123
           K+PD+I  I ++  P+ ++FILD E VA DR+   ++  FQ L++R R      +    I
Sbjct: 595 KYPDIISRIPKIKHPSVTSFILDTEAVAWDREKK-QIQPFQVLTTRKRKE----VDASEI 654

Query: 124 KVDICVFVFDIMLANGEQ--RYPNKHLNQL 152
           +V +C++ FD++  NGE   R P     QL
Sbjct: 655 QVQVCLYAFDLIYLNGESLVRQPLSRRRQL 679

[Close]
BLAST of Cla010765 vs. Swiss-Prot
Match: DNLI1_DICDI (DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.7e-31
Identity = 65/137 (47.45%), Postives = 90/137 (65.69%), Query Frame = 1 

Query: 4   GIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDDTTS 63
           GIP+KPMLA+ T GISQ L  F +  FTCE+KYDG+RAQIH+L DG+  +++RN +D T 
Sbjct: 813 GIPVKPMLAQPTTGISQMLDRFSDMEFTCEFKYDGERAQIHRLPDGTTHIYTRNLEDYTQ 872

Query: 64  KFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAVDSI 123
           K+PD++  + +   P   +FILD E VA D     +++SFQ LS+R R S    + +  I
Sbjct: 873 KYPDIVANVTKFVGPNVKSFILDCEAVAFDAATK-KILSFQVLSTRARKS----VQLSQI 932

Query: 124 KVDICVFVFDIMLANGE 141
           KV +CVF FD++  NG+
Sbjct: 933 KVPVCVFAFDLLYLNGQ 944

[Close]
BLAST of Cla010765 vs. TrEMBL
Match: A0A067FAQ2_CITSI (DNA ligase (Fragment) OS=Citrus sinensis GN=CISIN_1g0010451mg PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.3e-60
Identity = 112/141 (79.43%), Postives = 126/141 (89.36%), Query Frame = 1 

Query: 1   MVSGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDD 60
           MV G+PIKPMLAKITNG+ Q LK+F+NKAFTCEYKYDGQRAQIHKL DG+VR+FSRN D+
Sbjct: 670 MVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDE 729

Query: 61  TTSKFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAV 120
           TTS+FPDLI IINE CKPAA TFILDAEVVA+DRKN C++MSFQELSSR RG K S+I +
Sbjct: 730 TTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITI 789

Query: 121 DSIKVDICVFVFDIMLANGEQ 142
            S+KVDICVFVFDIM ANGEQ
Sbjct: 790 KSVKVDICVFVFDIMFANGEQ 810

[Close]
BLAST of Cla010765 vs. TrEMBL
Match: V4SXY8_9ROSI (DNA ligase OS=Citrus clementina GN=CICLE_v10010910mg PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.3e-60
Identity = 112/141 (79.43%), Postives = 126/141 (89.36%), Query Frame = 1 

Query: 1    MVSGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDD 60
            MV G+PIKPMLAKITNG+ Q LK+F+NKAFTCEYKYDGQRAQIHKL DG+VR+FSRN D+
Sbjct: 1011 MVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDE 1070

Query: 61   TTSKFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAV 120
            TTS+FPDLI IINE CKPAA TFILDAEVVA+DRKN C++MSFQELSSR RG K S+I +
Sbjct: 1071 TTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITI 1130

Query: 121  DSIKVDICVFVFDIMLANGEQ 142
             S+KVDICVFVFDIM ANGEQ
Sbjct: 1131 KSVKVDICVFVFDIMFANGEQ 1151

[Close]
BLAST of Cla010765 vs. TrEMBL
Match: V4T333_9ROSI (DNA ligase OS=Citrus clementina GN=CICLE_v10010910mg PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.3e-60
Identity = 112/141 (79.43%), Postives = 126/141 (89.36%), Query Frame = 1 

Query: 1    MVSGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDD 60
            MV G+PIKPMLAKITNG+ Q LK+F+NKAFTCEYKYDGQRAQIHKL DG+VR+FSRN D+
Sbjct: 1011 MVPGVPIKPMLAKITNGVPQVLKLFQNKAFTCEYKYDGQRAQIHKLVDGTVRIFSRNGDE 1070

Query: 61   TTSKFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAV 120
            TTS+FPDLI IINE CKPAA TFILDAEVVA+DRKN C++MSFQELSSR RG K S+I +
Sbjct: 1071 TTSRFPDLISIINEFCKPAAGTFILDAEVVAIDRKNGCKIMSFQELSSRERGGKDSVITI 1130

Query: 121  DSIKVDICVFVFDIMLANGEQ 142
             S+KVDICVFVFDIM ANGEQ
Sbjct: 1131 KSVKVDICVFVFDIMFANGEQ 1151

[Close]
BLAST of Cla010765 vs. TrEMBL
Match: A0A0S3RR05_PHAAN (DNA ligase OS=Vigna angularis var. angularis GN=Vigan.04G011200 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.8e-59
Identity = 113/141 (80.14%), Postives = 125/141 (88.65%), Query Frame = 1 

Query: 1    MVSGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDD 60
            MV GIPIKPMLAKITNGI QALK+FENKAFTCEYKYDGQRAQIHKL DGS+RVFSRN D+
Sbjct: 1008 MVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDE 1067

Query: 61   TTSKFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAV 120
            TTS+FPDLI II E  KP ASTF++DAEVV +DRKN CR+MSFQELSSRGRG K +L+  
Sbjct: 1068 TTSRFPDLIDIIKESSKPVASTFVMDAEVVGIDRKNGCRIMSFQELSSRGRGGKDALVTA 1127

Query: 121  DSIKVDICVFVFDIMLANGEQ 142
            +SIKVDIC+FVFDIM ANGEQ
Sbjct: 1128 ESIKVDICIFVFDIMFANGEQ 1148

[Close]
BLAST of Cla010765 vs. TrEMBL
Match: A0A0L9TDF0_PHAAN (DNA ligase OS=Phaseolus angularis GN=LR48_Vigan549s009200 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.8e-59
Identity = 113/141 (80.14%), Postives = 125/141 (88.65%), Query Frame = 1 

Query: 1    MVSGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDD 60
            MV GIPIKPMLAKITNGI QALK+FENKAFTCEYKYDGQRAQIHKL DGS+RVFSRN D+
Sbjct: 1008 MVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDE 1067

Query: 61   TTSKFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAV 120
            TTS+FPDLI II E  KP ASTF++DAEVV +DRKN CR+MSFQELSSRGRG K +L+  
Sbjct: 1068 TTSRFPDLIDIIKESSKPVASTFVMDAEVVGIDRKNGCRIMSFQELSSRGRGGKDALVTA 1127

Query: 121  DSIKVDICVFVFDIMLANGEQ 142
            +SIKVDIC+FVFDIM ANGEQ
Sbjct: 1128 ESIKVDICIFVFDIMFANGEQ 1148

[Close]
BLAST of Cla010765 vs. NCBI nr
Match: gi|659086681|ref|XP_008444066.1| (PREDICTED: uncharacterized protein LOC103487505 isoform X6 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 3.8e-66
Identity = 131/141 (92.91%), Postives = 134/141 (95.04%), Query Frame = 1 

Query: 1    MVSGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDD 60
            MV GIPIKPMLAKITNGI +ALKIFENKAFTCEYKYDGQRAQIHKLADGS+RVFSRNSDD
Sbjct: 1014 MVPGIPIKPMLAKITNGIPRALKIFENKAFTCEYKYDGQRAQIHKLADGSLRVFSRNSDD 1073

Query: 61   TTSKFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAV 120
            TTSKFPDLIKIINEL KPA STFILDAEVV VDRKNNCRLMSFQELSSRGRG+K SLIAV
Sbjct: 1074 TTSKFPDLIKIINELSKPAVSTFILDAEVVGVDRKNNCRLMSFQELSSRGRGNKDSLIAV 1133

Query: 121  DSIKVDICVFVFDIMLANGEQ 142
            DSIKVDICVF FDIMLANGEQ
Sbjct: 1134 DSIKVDICVFAFDIMLANGEQ 1154

[Close]
BLAST of Cla010765 vs. NCBI nr
Match: gi|659086679|ref|XP_008444065.1| (PREDICTED: DNA ligase 1 isoform X5 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 3.8e-66
Identity = 131/141 (92.91%), Postives = 134/141 (95.04%), Query Frame = 1 

Query: 1    MVSGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDD 60
            MV GIPIKPMLAKITNGI +ALKIFENKAFTCEYKYDGQRAQIHKLADGS+RVFSRNSDD
Sbjct: 1014 MVPGIPIKPMLAKITNGIPRALKIFENKAFTCEYKYDGQRAQIHKLADGSLRVFSRNSDD 1073

Query: 61   TTSKFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAV 120
            TTSKFPDLIKIINEL KPA STFILDAEVV VDRKNNCRLMSFQELSSRGRG+K SLIAV
Sbjct: 1074 TTSKFPDLIKIINELSKPAVSTFILDAEVVGVDRKNNCRLMSFQELSSRGRGNKDSLIAV 1133

Query: 121  DSIKVDICVFVFDIMLANGEQ 142
            DSIKVDICVF FDIMLANGEQ
Sbjct: 1134 DSIKVDICVFAFDIMLANGEQ 1154

[Close]
BLAST of Cla010765 vs. NCBI nr
Match: gi|659086677|ref|XP_008444064.1| (PREDICTED: DNA ligase 1 isoform X4 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 3.8e-66
Identity = 131/141 (92.91%), Postives = 134/141 (95.04%), Query Frame = 1 

Query: 1    MVSGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDD 60
            MV GIPIKPMLAKITNGI +ALKIFENKAFTCEYKYDGQRAQIHKLADGS+RVFSRNSDD
Sbjct: 1014 MVPGIPIKPMLAKITNGIPRALKIFENKAFTCEYKYDGQRAQIHKLADGSLRVFSRNSDD 1073

Query: 61   TTSKFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAV 120
            TTSKFPDLIKIINEL KPA STFILDAEVV VDRKNNCRLMSFQELSSRGRG+K SLIAV
Sbjct: 1074 TTSKFPDLIKIINELSKPAVSTFILDAEVVGVDRKNNCRLMSFQELSSRGRGNKDSLIAV 1133

Query: 121  DSIKVDICVFVFDIMLANGEQ 142
            DSIKVDICVF FDIMLANGEQ
Sbjct: 1134 DSIKVDICVFAFDIMLANGEQ 1154

[Close]
BLAST of Cla010765 vs. NCBI nr
Match: gi|659086675|ref|XP_008444063.1| (PREDICTED: DNA ligase 1 isoform X3 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 3.8e-66
Identity = 131/141 (92.91%), Postives = 134/141 (95.04%), Query Frame = 1 

Query: 1    MVSGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDD 60
            MV GIPIKPMLAKITNGI +ALKIFENKAFTCEYKYDGQRAQIHKLADGS+RVFSRNSDD
Sbjct: 1014 MVPGIPIKPMLAKITNGIPRALKIFENKAFTCEYKYDGQRAQIHKLADGSLRVFSRNSDD 1073

Query: 61   TTSKFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAV 120
            TTSKFPDLIKIINEL KPA STFILDAEVV VDRKNNCRLMSFQELSSRGRG+K SLIAV
Sbjct: 1074 TTSKFPDLIKIINELSKPAVSTFILDAEVVGVDRKNNCRLMSFQELSSRGRGNKDSLIAV 1133

Query: 121  DSIKVDICVFVFDIMLANGEQ 142
            DSIKVDICVF FDIMLANGEQ
Sbjct: 1134 DSIKVDICVFAFDIMLANGEQ 1154

[Close]
BLAST of Cla010765 vs. NCBI nr
Match: gi|659086673|ref|XP_008444062.1| (PREDICTED: DNA ligase 1 isoform X2 [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 3.8e-66
Identity = 131/141 (92.91%), Postives = 134/141 (95.04%), Query Frame = 1 

Query: 1    MVSGIPIKPMLAKITNGISQALKIFENKAFTCEYKYDGQRAQIHKLADGSVRVFSRNSDD 60
            MV GIPIKPMLAKITNGI +ALKIFENKAFTCEYKYDGQRAQIHKLADGS+RVFSRNSDD
Sbjct: 1013 MVPGIPIKPMLAKITNGIPRALKIFENKAFTCEYKYDGQRAQIHKLADGSLRVFSRNSDD 1072

Query: 61   TTSKFPDLIKIINELCKPAASTFILDAEVVAVDRKNNCRLMSFQELSSRGRGSKGSLIAV 120
            TTSKFPDLIKIINEL KPA STFILDAEVV VDRKNNCRLMSFQELSSRGRG+K SLIAV
Sbjct: 1073 TTSKFPDLIKIINELSKPAVSTFILDAEVVGVDRKNNCRLMSFQELSSRGRGNKDSLIAV 1132

Query: 121  DSIKVDICVFVFDIMLANGEQ 142
            DSIKVDICVF FDIMLANGEQ
Sbjct: 1133 DSIKVDICVFAFDIMLANGEQ 1153

The following BLAST results are available for this feature:
BLAST of Cla010765 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LIG6_ARATH1.4e-4967.38DNA ligase 6 OS=Arabidopsis thaliana GN=LIG6 PE=2 SV=1[more]
DNLI1_HUMAN8.0e-3248.67DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1[more]
DNLI1_ARATH2.3e-3147.10DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2[more]
DNLI1_MOUSE6.7e-3146.67DNA ligase 1 OS=Mus musculus GN=Lig1 PE=1 SV=2[more]
DNLI1_DICDI6.7e-3147.45DNA ligase 1 OS=Dictyostelium discoideum GN=lig1 PE=3 SV=1[more]
BLAST of Cla010765 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067FAQ2_CITSI6.3e-6079.43DNA ligase (Fragment) OS=Citrus sinensis GN=CISIN_1g0010451mg PE=3 SV=1[more]
V4SXY8_9ROSI6.3e-6079.43DNA ligase OS=Citrus clementina GN=CICLE_v10010910mg PE=3 SV=1[more]
V4T333_9ROSI6.3e-6079.43DNA ligase OS=Citrus clementina GN=CICLE_v10010910mg PE=3 SV=1[more]
A0A0S3RR05_PHAAN1.8e-5980.14DNA ligase OS=Vigna angularis var. angularis GN=Vigan.04G011200 PE=3 SV=1[more]
A0A0L9TDF0_PHAAN1.8e-5980.14DNA ligase OS=Phaseolus angularis GN=LR48_Vigan549s009200 PE=3 SV=1[more]
BLAST of Cla010765 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086681|ref|XP_008444066.1|3.8e-6692.91PREDICTED: uncharacterized protein LOC103487505 isoform X6 [Cucumis melo][more]
gi|659086679|ref|XP_008444065.1|3.8e-6692.91PREDICTED: DNA ligase 1 isoform X5 [Cucumis melo][more]
gi|659086677|ref|XP_008444064.1|3.8e-6692.91PREDICTED: DNA ligase 1 isoform X4 [Cucumis melo][more]
gi|659086675|ref|XP_008444063.1|3.8e-6692.91PREDICTED: DNA ligase 1 isoform X3 [Cucumis melo][more]
gi|659086673|ref|XP_008444062.1|3.8e-6692.91PREDICTED: DNA ligase 1 isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012310DNA_ligase_ATP-dep_cent
IPR016059DNA_ligase_ATP-dep_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003910DNA ligase (ATP) activity
GO:0005524ATP binding
GO:0003909DNA ligase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006310DNA recombination
GO:0051103DNA ligation involved in DNA repair
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006310 DNA recombination
biological_process GO:0006260 DNA replication
biological_process GO:0031848 protection from non-homologous end joining at telomere
biological_process GO:0006281 DNA repair
biological_process GO:0051103 DNA ligation involved in DNA repair
biological_process GO:0006273 lagging strand elongation
biological_process GO:0006303 double-strand break repair via nonhomologous end joining
biological_process GO:0036297 interstrand cross-link repair
cellular_component GO:0005575 cellular_component
cellular_component GO:0000784 nuclear chromosome, telomeric region
cellular_component GO:0005737 cytoplasm
molecular_function GO:0035312 5'-3' exodeoxyribonuclease activity
molecular_function GO:0003909 DNA ligase activity
molecular_function GO:0003910 DNA ligase (ATP) activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003684 damaged DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010765Cla010765.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012310DNA ligase, ATP-dependent, centralPFAMPF01068DNA_ligase_A_Mcoord: 9..149
score: 1.2
IPR016059DNA ligase, ATP-dependent, conserved sitePROSITEPS00697DNA_LIGASE_A1coord: 33..41
scor
NoneNo IPR availableGENE3DG3DSA:3.30.1490.70coord: 12..38
score: 1.
NoneNo IPR availableGENE3DG3DSA:3.30.470.30coord: 39..141
score: 8.1
NoneNo IPR availablePANTHERPTHR10459DNA LIGASEcoord: 1..141
score: 3.4
NoneNo IPR availablePANTHERPTHR10459:SF38DNA LIGASEcoord: 1..141
score: 3.4
NoneNo IPR availableunknownSSF56091DNA ligase/mRNA capping enzyme, catalytic domaincoord: 4..147
score: 9.11

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla010765Cla97C07G143470Watermelon (97103) v2wmwmbB174
Cla010765Lsi07G009350Bottle gourd (USVL1VR-Ls)lsiwmB447
Cla010765Bhi01G001673Wax gourdwgowmB179
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla010765Cucurbita maxima (Rimu)cmawmB433
Cla010765Cucurbita moschata (Rifu)cmowmB221
Cla010765Melon (DHL92) v3.5.1mewmB519
Cla010765Watermelon (Charleston Gray)wcgwmB372
Cla010765Cucumber (Chinese Long) v2cuwmB309
Cla010765Cucurbita pepo (Zucchini)cpewmB603
Cla010765Cucumber (Gy14) v2cgybwmB285
Cla010765Melon (DHL92) v3.6.1medwmB505
Cla010765Cucumber (Chinese Long) v3cucwmB320