Cla010747 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010747
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr7 : 29431284 .. 29431625 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGGACCCAGATGAGGTCTTCAGAGACGACGATGACGATCCCGACAATCCACTCTTTCAGGTTCATACATTACAAAAAGATTCTGCATGTATTTCTTCTTCTTTCTCCATTTCCTTAGTTCCATTCCATTTTTTCTCTACTTTATTTGGTCAACAGGAGAGGGAGTCGACGAAAGAATTGGCGGTTTACTTGGTGGATGCTTCCCCTAAAATGTTCAGCACCACTTTCCCCTCCGTGAGTTCTTTTCCCACTCATTTCTTTTCCCTTCTTGCTGGCTGCTTCTTTCCATTTCTCTTTGTTTCAATCCTCGAGCTGAAGCTTATTGTGATTCTGTAA

mRNA sequence

ATGGATTTGGACCCAGATGAGGTCTTCAGAGACGACGATGACGATCCCGACAATCCACTCTTTCAGGAGAGGGAGTCGACGAAAGAATTGGCGGTTTACTTGGTGGATGCTTCCCCTAAAATGTTCAGCACCACTTTCCCCTCCGTGAGTTCTTTTCCCACTCATTTCTTTTCCCTTCTTGCTGGCTGCTTCTTTCCATTTCTCTTTGTTTCAATCCTCGAGCTGAAGCTTATTGTGATTCTGTAA

Coding sequence (CDS)

ATGGATTTGGACCCAGATGAGGTCTTCAGAGACGACGATGACGATCCCGACAATCCACTCTTTCAGGAGAGGGAGTCGACGAAAGAATTGGCGGTTTACTTGGTGGATGCTTCCCCTAAAATGTTCAGCACCACTTTCCCCTCCGTGAGTTCTTTTCCCACTCATTTCTTTTCCCTTCTTGCTGGCTGCTTCTTTCCATTTCTCTTTGTTTCAATCCTCGAGCTGAAGCTTATTGTGATTCTGTAA

Protein sequence

MDLDPDEVFRDDDDDPDNPLFQERESTKELAVYLVDASPKMFSTTFPSVSSFPTHFFSLLAGCFFPFLFVSILELKLIVIL

Homology

[Close]

BLAST of Cla010747 vs. Swiss-Prot
Match: KU70_ARATH (ATP-dependent DNA helicase 2 subunit KU70 OS=Arabidopsis thaliana GN=KU70 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-13
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 1


Query: 1  MDLDPDEVFRDDDDDPDNPLFQERESTKELAVYLVDASPKMFSTTFPS 49
          M+LDPD+VFRD+D+DP+N  FQE+E++KE  VYL+DASPKMF +T PS
Sbjct: 1  MELDPDDVFRDEDEDPENDFFQEKEASKEFVVYLIDASPKMFCSTCPS 48

[Close]

BLAST of Cla010747 vs. Swiss-Prot
Match: KU70_ORYSJ (ATP-dependent DNA helicase 2 subunit KU70 OS=Oryza sativa subsp. japonica GN=KU70 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.1e-10
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1


Query: 1  MDLDPDEVFRDDDDDPDNPLFQERESTKELAVYLVDASPKMFSTTFPSVSSFPTHFFSLL 60
          MDLDP+ +FRDD D+ D+ + QERE+ KE+ VYL+DASPKMF+    +     THF +++
Sbjct: 1  MDLDPEGLFRDDSDEDDDNV-QEREANKEMVVYLIDASPKMFTPATKADEKEETHFHTIV 59

[Close]

BLAST of Cla010747 vs. TrEMBL
Match: M5XVL1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002852mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.5e-15
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 1  MDLDPDEVFRDDDDDPDNPLFQERESTKELAVYLVDASPKMFSTTFPSVSSFPTHFFSLL 60
          M++DPD++FRDD+DDPDN LFQERESTKEL VYLVDASPKMF+TT P+        F + 
Sbjct: 1  MEIDPDDLFRDDEDDPDNELFQERESTKELVVYLVDASPKMFTTTCPAGDRKDDTHFHVA 60

Query: 61 AGCFFPFLFVSIL 74
            C    L   I+
Sbjct: 61 VSCIAQSLKTQII 73

[Close]

BLAST of Cla010747 vs. TrEMBL
Match: A0A118JSY8_CYNCS (Ku70 OS=Cynara cardunculus var. scolymus GN=Ccrd_024900 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 9.5e-14
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 1  MDLDPDEVFRDDDDDPDNPLFQERESTKELAVYLVDASPKMFSTTFPSVSSFPTHFFSLL 60
          MD+DPD+VFRD++DDP+N L+QER+++KEL VYLVDASPKMF+ T P         F + 
Sbjct: 1  MDMDPDDVFRDEEDDPENDLYQERQASKELLVYLVDASPKMFNITCPGEDQKNESHFHVA 60

Query: 61 AGCFFPFLFVSIL 74
            C   F+ V I+
Sbjct: 61 VSCIAQFIKVQII 73

[Close]

BLAST of Cla010747 vs. TrEMBL
Match: B9S6B3_RICCO (Ku P70 DNA helicase, putative OS=Ricinus communis GN=RCOM_0534680 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-13
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 1


Query: 1  MDLDPDEVFRDDDDDPDNPLFQERESTKELAVYLVDASPKMFSTTFPSV-SSFPTHF 57
          M+LDPD+VFRDD+DDPD+  +Q+RES+KE  VYLVDASPKMF+TTFP+      THF
Sbjct: 1  MELDPDDVFRDDEDDPDSDFYQQRESSKEFVVYLVDASPKMFTTTFPAEDQKDETHF 57

[Close]

BLAST of Cla010747 vs. TrEMBL
Match: K4CWZ3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-13
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 1  MDLDPDEVFRDDDDDPDNPLFQERESTKELAVYLVDASPKMFSTTFPS-VSSFPTHF 57
          MDLDPDEVFRDD+DDP+N  F+ER++TKE  VYLVDASPKMFS+T P+      THF
Sbjct: 3  MDLDPDEVFRDDEDDPENEFFKERDNTKEFLVYLVDASPKMFSSTCPTDDEKIATHF 59

[Close]

BLAST of Cla010747 vs. TrEMBL
Match: Q0KJ40_POPNI (Ku70 homolog OS=Populus nigra GN=PnKu70 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.1e-13
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 1  MDLDPDEVFRDDDDDPDNPLFQERESTKELAVYLVDASPKMFSTTFPSVSSFPTHFFSLL 60
          M+LDPD++F+DD+DDPD+  +Q+RES+KE  VYLVDASPKMFS+T PS        F + 
Sbjct: 1  MELDPDDIFKDDEDDPDSEFYQQRESSKEFVVYLVDASPKMFSSTCPSEDGKEETHFQIA 60

Query: 61 AGCFFPFLFVSIL 74
            C    L   I+
Sbjct: 61 ISCIAQSLKTQII 73

[Close]

BLAST of Cla010747 vs. NCBI nr
Match: gi|659107941|ref|XP_008453932.1| (PREDICTED: ATP-dependent DNA helicase 2 subunit KU70 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-18
Identity = 50/73 (68.49%), Postives = 52/73 (71.23%), Query Frame = 1


Query: 1  MDLDPDEVFRDDDDDPDNPLFQERESTKELAVYLVDASPKMFSTTFPSVSSFPTHFFSLL 60
          MDLDPDEVFRDDDDDPDNP FQERESTKELAVYLVDASPKMFSTT PS        F + 
Sbjct: 1  MDLDPDEVFRDDDDDPDNPFFQERESTKELAVYLVDASPKMFSTTCPSEDKKRETHFQVA 60

Query: 61 AGCFFPFLFVSIL 74
            C    L   I+
Sbjct: 61 LSCISQSLKTQII 73

[Close]

BLAST of Cla010747 vs. NCBI nr
Match: gi|449468754|ref|XP_004152086.1| (PREDICTED: ATP-dependent DNA helicase 2 subunit KU70 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 5.9e-17
Identity = 48/73 (65.75%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 1  MDLDPDEVFRDDDDDPDNPLFQERESTKELAVYLVDASPKMFSTTFPSVSSFPTHFFSLL 60
          MDLDPDEVFRDDDDDPDNP FQERESTKELAVYLVDASPKMF+TT  S        F + 
Sbjct: 1  MDLDPDEVFRDDDDDPDNPFFQERESTKELAVYLVDASPKMFTTTCLSEDKKEETHFQVA 60

Query: 61 AGCFFPFLFVSIL 74
            C    L   I+
Sbjct: 61 LSCISQSLKTQII 73

[Close]

BLAST of Cla010747 vs. NCBI nr
Match: gi|645232060|ref|XP_008222687.1| (PREDICTED: ATP-dependent DNA helicase 2 subunit KU70 [Prunus mume])

HSP 1 Score: 87.8 bits (216), Expect = 9.4e-15
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 1  MDLDPDEVFRDDDDDPDNPLFQERESTKELAVYLVDASPKMFSTTFPSVSSFPTHFFSLL 60
          M++DPD++FRDD+DDPDN LFQERESTKEL VYLVDASPKMF+TT P+        F + 
Sbjct: 1  MEIDPDDLFRDDEDDPDNELFQERESTKELVVYLVDASPKMFTTTCPAGDRKDDTHFHVA 60

Query: 61 AGCFFPFLFVSIL 74
            C    L   I+
Sbjct: 61 VSCIAQSLKTQII 73

[Close]

BLAST of Cla010747 vs. NCBI nr
Match: gi|596126888|ref|XP_007221986.1| (hypothetical protein PRUPE_ppa002852mg [Prunus persica])

HSP 1 Score: 87.8 bits (216), Expect = 9.4e-15
Identity = 42/73 (57.53%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 1  MDLDPDEVFRDDDDDPDNPLFQERESTKELAVYLVDASPKMFSTTFPSVSSFPTHFFSLL 60
          M++DPD++FRDD+DDPDN LFQERESTKEL VYLVDASPKMF+TT P+        F + 
Sbjct: 1  MEIDPDDLFRDDEDDPDNELFQERESTKELVVYLVDASPKMFTTTCPAGDRKDDTHFHVA 60

Query: 61 AGCFFPFLFVSIL 74
            C    L   I+
Sbjct: 61 VSCIAQSLKTQII 73

[Close]

BLAST of Cla010747 vs. NCBI nr
Match: gi|657949382|ref|XP_008342867.1| (PREDICTED: ATP-dependent DNA helicase 2 subunit KU70-like [Malus domestica])

HSP 1 Score: 85.1 bits (209), Expect = 6.1e-14
Identity = 42/73 (57.53%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 1  MDLDPDEVFRDDDDDPDNPLFQERESTKELAVYLVDASPKMFSTTFPSVSSFPTHFFSLL 60
          M++DPD++FRDDDDD DN LFQ RESTK+L VYLVDASPKMFSTT PS        F + 
Sbjct: 3  MEIDPDDLFRDDDDDADNELFQGRESTKDLVVYLVDASPKMFSTTCPSGDDKDETHFHVA 62

Query: 61 AGCFFPFLFVSIL 74
            C    L   I+
Sbjct: 63 VSCIAQSLKTQII 75

The following BLAST results are available for this feature:

BLAST of Cla010747 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KU70_ARATH	1.4e-13	66.67	ATP-dependent DNA helicase 2 subunit KU70 OS=Arabidopsis thaliana GN=KU70 PE=1 S...	[more]
KU70_ORYSJ	9.1e-10	50.00	ATP-dependent DNA helicase 2 subunit KU70 OS=Oryza sativa subsp. japonica GN=KU7...	[more]

BLAST of Cla010747 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XVL1_PRUPE	6.5e-15	57.53	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002852mg PE=4 SV=1	[more]
A0A118JSY8_CYNCS	9.5e-14	52.05	Ku70 OS=Cynara cardunculus var. scolymus GN=Ccrd_024900 PE=4 SV=1	[more]
B9S6B3_RICCO	2.1e-13	66.67	Ku P70 DNA helicase, putative OS=Ricinus communis GN=RCOM_0534680 PE=4 SV=1	[more]
K4CWZ3_SOLLC	2.1e-13	68.42	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
Q0KJ40_POPNI	6.1e-13	50.68	Ku70 homolog OS=Populus nigra GN=PnKu70 PE=2 SV=1	[more]

BLAST of Cla010747 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107941\|ref\|XP_008453932.1\|	2.4e-18	68.49	PREDICTED: ATP-dependent DNA helicase 2 subunit KU70 [Cucumis melo]	[more]
gi\|449468754\|ref\|XP_004152086.1\|	5.9e-17	65.75	PREDICTED: ATP-dependent DNA helicase 2 subunit KU70 [Cucumis sativus]	[more]
gi\|645232060\|ref\|XP_008222687.1\|	9.4e-15	57.53	PREDICTED: ATP-dependent DNA helicase 2 subunit KU70 [Prunus mume]	[more]
gi\|596126888\|ref\|XP_007221986.1\|	9.4e-15	57.53	hypothetical protein PRUPE_ppa002852mg [Prunus persica]	[more]
gi\|657949382\|ref\|XP_008342867.1\|	6.1e-14	57.53	PREDICTED: ATP-dependent DNA helicase 2 subunit KU70-like [Malus domestica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0000723	telomere maintenance
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0043564	Ku70:Ku80 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004003	ATP-dependent DNA helicase activity
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0042162	telomeric DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010747	Cla010747.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010747	Carg15492	Silver-seed gourd	carwmB0691
Cla010747	CsaV3_4G003770	Cucumber (Chinese Long) v3	cucwmB324

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010747	Cucumber (Gy14) v1	cgywmB117
Cla010747	Cucurbita maxima (Rimu)	cmawmB237
Cla010747	Cucurbita maxima (Rimu)	cmawmB795
Cla010747	Cucurbita moschata (Rifu)	cmowmB224
Cla010747	Cucurbita moschata (Rifu)	cmowmB789
Cla010747	Melon (DHL92) v3.5.1	mewmB506
Cla010747	Watermelon (Charleston Gray)	wcgwmB372
Cla010747	Cucumber (Chinese Long) v2	cuwmB312
Cla010747	Cucurbita pepo (Zucchini)	cpewmB606
Cla010747	Cucurbita pepo (Zucchini)	cpewmB842
Cla010747	Bottle gourd (USVL1VR-Ls)	lsiwmB441
Cla010747	Cucumber (Gy14) v2	cgybwmB290
Cla010747	Melon (DHL92) v3.6.1	medwmB493
Cla010747	Silver-seed gourd	carwmB0183
Cla010747	Watermelon (97103) v2	wmwmbB174
Cla010747	Wax gourd	wgowmB176