Cla010658 (gene) Watermelon (97103) v1

Overview
NameCla010658
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRetrotransposon protein (AHRD V1 ***- A2I5E6_BETVU)
LocationChr6 : 12345588 .. 12346022 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACTCCAAGTCGTACACCAAGAGAATCGACAACCTCAGAATGCTTGCAGGGTACCAATCTCCAAAGTTCCAGCTGTTCGACGGAAAGGGCAACCTAAAGCAACATGTTGCCTACTTTGTTGAAACATGCGAGAACGCGAGAACTAGAGAAGACCTATTAGTCAAGCAGTTCATTCGCACTTTAAAAGAAAACGTTTTCAACTGGTACACCGATTTGGAGTTGGAAGTGATTGACATCTAGGAACAATTGGAAAGAGAATTCTTAAACTGCTTTTATAGCACTAGGCGTACTATGAGTATGATGGAGTTGACAAACGACAAGCAGCGGAAAAGAGCACCAATCATCGACTACATCAATCAATGGAGGTCTCTGAGTCTTGACTACAAAGACCGACTTACCGAACTATCTACGGTGGAGATACGATCCTACTAA

mRNA sequence

ATGTACTCCAAGTCGTACACCAAGAGAATCGACAACCTCAGAATGCTTGCAGGGTACCAATCTCCAAAGTTCCAGCTGTTCGACGGAAAGGGCAACCTAAAGCAACATGTTGCCTACTTTGTTGAAACATGCGAGAACGCGAGAACTAGAGAAGACCTATTAGTCAAGCAGTTCATTCGCACTTTAAAAGAAAACGTTTTCAACTGGCGTACTATGAGTATGATGGAGTTGACAAACGACAAGCAGCGGAAAAGAGCACCAATCATCGACTACATCAATCAATGGAGGTCTCTGAGTCTTGACTACAAAGACCGACTTACCGAACTATCTACGGTGGAGATACGATCCTACTAA

Coding sequence (CDS)

ATGTACTCCAAGTCGTACACCAAGAGAATCGACAACCTCAGAATGCTTGCAGGGTACCAATCTCCAAAGTTCCAGCTGTTCGACGGAAAGGGCAACCTAAAGCAACATGTTGCCTACTTTGTTGAAACATGCGAGAACGCGAGAACTAGAGAAGACCTATTAGTCAAGCAGTTCATTCGCACTTTAAAAGAAAACGTTTTCAACTGGCGTACTATGAGTATGATGGAGTTGACAAACGACAAGCAGCGGAAAAGAGCACCAATCATCGACTACATCAATCAATGGAGGTCTCTGAGTCTTGACTACAAAGACCGACTTACCGAACTATCTACGGTGGAGATACGATCCTACTAA

Protein sequence

MYSKSYTKRIDNLRMLAGYQSPKFQLFDGKGNLKQHVAYFVETCENARTREDLLVKQFIRTLKENVFNWRTMSMMELTNDKQRKRAPIIDYINQWRSLSLDYKDRLTELSTVEIRSY
Homology
[Close]
BLAST of Cla010658 vs. TrEMBL
Match: A5ACS9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020592 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-32
Identity = 76/135 (56.30%), Postives = 90/135 (66.67%), Query Frame = 1 

Query: 1   MYSKSYTKRIDNLRMLAGYQSPKFQLFDGKGNLKQHVAYFVETCENARTREDLLVKQFIR 60
           MYSK YTK+IDNLRM  GYQ PKFQ FDGKGN KQHVA+FVE C NA T +DLLVKQ +R
Sbjct: 30  MYSKPYTKKIDNLRMPMGYQPPKFQSFDGKGNPKQHVAHFVEICNNAGTDDDLLVKQLVR 89

Query: 61  TLKENVFNW---------------------------RTMSMMELTNDKQRKRAPIIDYIN 109
           +L+ N F+W                           RT+SMMELTN K+ K  P+++YIN
Sbjct: 90  SLRGNAFDWCIDLAPECIDSWDQMECEFLNHFYSTRRTVSMMELTNTKKWKDEPVVNYIN 149

[Close]
BLAST of Cla010658 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.5e-31
Identity = 75/141 (53.19%), Postives = 91/141 (64.54%), Query Frame = 1 

Query: 1   MYSKSYTKRIDNLRMLAGYQSPKFQLFDGKGNLKQHVAYFVETCENARTREDLLVKQFIR 60
           MYSKSYTKRIDNLRM  GYQ PKFQ FDG+GN KQH+A+FVETCENA +R D LVKQF+R
Sbjct: 190 MYSKSYTKRIDNLRMPLGYQPPKFQQFDGRGNPKQHIAHFVETCENAGSRGDQLVKQFVR 249

Query: 61  TLKENVFNWRTMSMMELTNDKQRKRA---------------------------PIIDYIN 115
           +LK N F W T    E+ ++ ++                              P+IDYIN
Sbjct: 250 SLKGNAFEWYTDLEPEVIDNWEQLEIEFLNRFYSTRRVVSMMELTNTKQRKGEPVIDYIN 309

[Close]
BLAST of Cla010658 vs. TrEMBL
Match: M5WEC9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025679mg PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-31
Identity = 71/141 (50.35%), Postives = 92/141 (65.25%), Query Frame = 1 

Query: 1   MYSKSYTKRIDNLRMLAGYQSPKFQLFDGKGNLKQHVAYFVETCENARTREDLLVKQFIR 60
           +YSK YTKR+DNLRM  GYQ  KF  FDGKGN KQHVA+F+E C +  T +D LVKQF+R
Sbjct: 121 IYSKPYTKRLDNLRMPTGYQPLKFMQFDGKGNPKQHVAHFIEMCNSVGTNDDYLVKQFVR 180

Query: 61  TLKENVFNW---------------------------RTMSMMELTNDKQRKRAPIIDYIN 115
           +L+   FNW                           R++SM+EL++ KQRK  P++DYIN
Sbjct: 181 SLRGTAFNWYIDLEPESIDSWEQMEREFLNRFYITRRSVSMIELSSTKQRKDKPVVDYIN 240

[Close]
BLAST of Cla010658 vs. TrEMBL
Match: M5WXF7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020726mg PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 9.4e-31
Identity = 73/129 (56.59%), Postives = 88/129 (68.22%), Query Frame = 1 

Query: 1   MYSKSYTKRIDNLRMLAGYQSPKFQLFDGKGNLKQHVAYFVETCENARTREDLLVKQFIR 60
           +YSK YT+RI+NLRM  GYQ PKFQ FDGKGN KQ +A+F+ETC NA T  D LVKQF+ 
Sbjct: 242 IYSKPYTRRIENLRMPTGYQPPKFQQFDGKGNPKQRIAHFIETCNNAGTEGDHLVKQFVH 301

Query: 61  TLKENVFNW---------------RTMSMMELTNDKQRKRAPIIDYINQWRSLSLDYKDR 115
              E++ +W               RT+SMMELTN KQ K  P++DYIN+W SLSLD K R
Sbjct: 302 LESESLNSWDQMEREFLNRFYSTRRTVSMMELTNTKQWKDEPVVDYINRWLSLSLDCKYR 361

[Close]
BLAST of Cla010658 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-30
Identity = 76/141 (53.90%), Postives = 90/141 (63.83%), Query Frame = 1 

Query: 1   MYSKSYTKRIDNLRMLAGYQSPKFQLFDGKGNLKQHVAYFVETCENARTREDLLVKQFIR 60
           MYSK YTKRIDNLRM  GYQ PKFQ FDGKGN KQH+A+FVETCENA +R D LV+QF+R
Sbjct: 127 MYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVETCENAGSRGDQLVRQFVR 186

Query: 61  TLKENVFNWRTMSMMELTNDKQR---------------------------KRAPIIDYIN 115
           +LK N F W T    E+T+  ++                           K   IIDYIN
Sbjct: 187 SLKGNAFEWYTDLEPEVTDSWEQLEKEFLNRFYSTKCTVSMMELTTTKQRKGDSIIDYIN 246

[Close]
BLAST of Cla010658 vs. NCBI nr
Match: gi|147780059|emb|CAN62298.1| (hypothetical protein VITISV_020592 [Vitis vinifera])

HSP 1 Score: 146.7 bits (369), Expect = 2.5e-32
Identity = 76/135 (56.30%), Postives = 90/135 (66.67%), Query Frame = 1 

Query: 1   MYSKSYTKRIDNLRMLAGYQSPKFQLFDGKGNLKQHVAYFVETCENARTREDLLVKQFIR 60
           MYSK YTK+IDNLRM  GYQ PKFQ FDGKGN KQHVA+FVE C NA T +DLLVKQ +R
Sbjct: 30  MYSKPYTKKIDNLRMPMGYQPPKFQSFDGKGNPKQHVAHFVEICNNAGTDDDLLVKQLVR 89

Query: 61  TLKENVFNW---------------------------RTMSMMELTNDKQRKRAPIIDYIN 109
           +L+ N F+W                           RT+SMMELTN K+ K  P+++YIN
Sbjct: 90  SLRGNAFDWCIDLAPECIDSWDQMECEFLNHFYSTRRTVSMMELTNTKKWKDEPVVNYIN 149

[Close]
BLAST of Cla010658 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 141.7 bits (356), Expect = 7.9e-31
Identity = 75/141 (53.19%), Postives = 91/141 (64.54%), Query Frame = 1 

Query: 1   MYSKSYTKRIDNLRMLAGYQSPKFQLFDGKGNLKQHVAYFVETCENARTREDLLVKQFIR 60
           MYSKSYTKRIDNLRM  GYQ PKFQ FDG+GN KQH+A+FVETCENA +R D LVKQF+R
Sbjct: 190 MYSKSYTKRIDNLRMPLGYQPPKFQQFDGRGNPKQHIAHFVETCENAGSRGDQLVKQFVR 249

Query: 61  TLKENVFNWRTMSMMELTNDKQRKRA---------------------------PIIDYIN 115
           +LK N F W T    E+ ++ ++                              P+IDYIN
Sbjct: 250 SLKGNAFEWYTDLEPEVIDNWEQLEIEFLNRFYSTRRVVSMMELTNTKQRKGEPVIDYIN 309

[Close]
BLAST of Cla010658 vs. NCBI nr
Match: gi|848907694|ref|XP_012852915.1| (PREDICTED: uncharacterized protein LOC105972499 [Erythranthe guttata])

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-30
Identity = 73/140 (52.14%), Postives = 91/140 (65.00%), Query Frame = 1 

Query: 2   YSKSYTKRIDNLRMLAGYQSPKFQLFDGKGNLKQHVAYFVETCENARTREDLLVKQFIRT 61
           Y+K YT R+D+L+M  GYQ PKFQ FDGKGN KQHVA+FVETC NA T  D LVKQF+R+
Sbjct: 183 YTKPYTLRVDDLKMPIGYQPPKFQQFDGKGNPKQHVAHFVETCNNAGTFGDYLVKQFVRS 242

Query: 62  LKENVFNW---------------------------RTMSMMELTNDKQRKRAPIIDYINQ 115
           LK N F+W                           RT+SM+ELTN +Q K   +IDYIN+
Sbjct: 243 LKGNAFDWYTDLEPNSIDSWSQMEQEFLNRFYSTRRTVSMIELTNSRQWKEEAVIDYINR 302

[Close]
BLAST of Cla010658 vs. NCBI nr
Match: gi|595859366|ref|XP_007210933.1| (hypothetical protein PRUPE_ppa025679mg [Prunus persica])

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-30
Identity = 71/141 (50.35%), Postives = 92/141 (65.25%), Query Frame = 1 

Query: 1   MYSKSYTKRIDNLRMLAGYQSPKFQLFDGKGNLKQHVAYFVETCENARTREDLLVKQFIR 60
           +YSK YTKR+DNLRM  GYQ  KF  FDGKGN KQHVA+F+E C +  T +D LVKQF+R
Sbjct: 121 IYSKPYTKRLDNLRMPTGYQPLKFMQFDGKGNPKQHVAHFIEMCNSVGTNDDYLVKQFVR 180

Query: 61  TLKENVFNW---------------------------RTMSMMELTNDKQRKRAPIIDYIN 115
           +L+   FNW                           R++SM+EL++ KQRK  P++DYIN
Sbjct: 181 SLRGTAFNWYIDLEPESIDSWEQMEREFLNRFYITRRSVSMIELSSTKQRKDKPVVDYIN 240

[Close]
BLAST of Cla010658 vs. NCBI nr
Match: gi|848907690|ref|XP_012852913.1| (PREDICTED: uncharacterized protein LOC105972498 [Erythranthe guttata])

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-30
Identity = 73/140 (52.14%), Postives = 91/140 (65.00%), Query Frame = 1 

Query: 2   YSKSYTKRIDNLRMLAGYQSPKFQLFDGKGNLKQHVAYFVETCENARTREDLLVKQFIRT 61
           Y+K YT R+D+L+M  GYQ PKFQ FDGKGN KQHVA+FVETC NA T  D LVKQF+R+
Sbjct: 183 YTKPYTLRVDDLKMPIGYQPPKFQQFDGKGNPKQHVAHFVETCNNAGTFGDYLVKQFVRS 242

Query: 62  LKENVFNW---------------------------RTMSMMELTNDKQRKRAPIIDYINQ 115
           LK N F+W                           RT+SM+ELTN +Q K   +IDYIN+
Sbjct: 243 LKGNAFDWYTDLEPNSIDSWSQMEQEFLNRFYSTRRTVSMIELTNSRQWKEEAVIDYINR 302

The following BLAST results are available for this feature:
BLAST of Cla010658 vs. TrEMBL
Match NameE-valueIdentityDescription
A5ACS9_VITVI1.7e-3256.30Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020592 PE=4 SV=1[more]
E5GCP6_CUCME5.5e-3153.19Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
M5WEC9_PRUPE7.2e-3150.35Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025679mg PE=4 SV=1[more]
M5WXF7_PRUPE9.4e-3156.59Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020726mg PE=4 SV=1[more]
E5GB67_CUCME1.2e-3053.90Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cla010658 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147780059|emb|CAN62298.1|2.5e-3256.30hypothetical protein VITISV_020592 [Vitis vinifera][more]
gi|307136441|gb|ADN34247.1|7.9e-3153.19ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|848907694|ref|XP_012852915.1|1.0e-3052.14PREDICTED: uncharacterized protein LOC105972499 [Erythranthe guttata][more]
gi|595859366|ref|XP_007210933.1|1.0e-3050.35hypothetical protein PRUPE_ppa025679mg [Prunus persica][more]
gi|848907690|ref|XP_012852913.1|1.0e-3052.14PREDICTED: uncharacterized protein LOC105972498 [Erythranthe guttata][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010658Cla010658.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla010658Silver-seed gourdcarwmB0039
Cla010658Silver-seed gourdcarwmB0127
Cla010658Silver-seed gourdcarwmB0571
Cla010658Silver-seed gourdcarwmB0747
Cla010658Silver-seed gourdcarwmB1032
Cla010658Cucumber (Chinese Long) v3cucwmB186
Cla010658Cucumber (Chinese Long) v3cucwmB643
Cla010658Watermelon (97103) v2wmwmbB393
Cla010658Watermelon (97103) v2wmwmbB406
Cla010658Watermelon (97103) v2wmwmbB421
Cla010658Wax gourdwgowmB155
Cla010658Wax gourdwgowmB647
Cla010658Wax gourdwgowmB680
Cla010658Watermelon (97103) v1wmwmB039
Cla010658Watermelon (97103) v1wmwmB163
Cla010658Cucumber (Gy14) v1cgywmB176
Cla010658Cucumber (Gy14) v1cgywmB653
Cla010658Cucurbita maxima (Rimu)cmawmB070
Cla010658Cucurbita maxima (Rimu)cmawmB137
Cla010658Cucurbita maxima (Rimu)cmawmB181
Cla010658Cucurbita maxima (Rimu)cmawmB361
Cla010658Cucurbita maxima (Rimu)cmawmB773
Cla010658Cucurbita moschata (Rifu)cmowmB062
Cla010658Cucurbita moschata (Rifu)cmowmB123
Cla010658Cucurbita moschata (Rifu)cmowmB168
Cla010658Cucurbita moschata (Rifu)cmowmB767
Cla010658Cucurbita moschata (Rifu)cmowmB866
Cla010658Melon (DHL92) v3.5.1mewmB254
Cla010658Melon (DHL92) v3.5.1mewmB290
Cla010658Melon (DHL92) v3.5.1mewmB433
Cla010658Watermelon (Charleston Gray)wcgwmB044
Cla010658Watermelon (Charleston Gray)wcgwmB112
Cla010658Watermelon (Charleston Gray)wcgwmB344
Cla010658Cucumber (Chinese Long) v2cuwmB174
Cla010658Cucumber (Chinese Long) v2cuwmB612
Cla010658Cucurbita pepo (Zucchini)cpewmB127
Cla010658Cucurbita pepo (Zucchini)cpewmB345
Cla010658Cucurbita pepo (Zucchini)cpewmB375
Cla010658Cucurbita pepo (Zucchini)cpewmB680
Cla010658Cucurbita pepo (Zucchini)cpewmB821
Cla010658Bottle gourd (USVL1VR-Ls)lsiwmB122
Cla010658Bottle gourd (USVL1VR-Ls)lsiwmB419
Cla010658Cucumber (Gy14) v2cgybwmB165
Cla010658Melon (DHL92) v3.6.1medwmB247
Cla010658Melon (DHL92) v3.6.1medwmB284
Cla010658Melon (DHL92) v3.6.1medwmB421