Cla010560 (gene) Watermelon (97103) v1

Overview
NameCla010560
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 10089332 .. 10089808 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGCAGGACCTGCGTCTATATATAAAGATACCACTCCTGGACGCGTCCTGATTGACGTCCAAGAAGAAATCTCAACACCCCGCGTGGGTGATCAGGTAAAATTTAATGTAGTTAATGCATTGAAAGAGCCTGATCATTTCCAATCTTGTCAGATAATCGCAGACACCAAGGAGAAGACAAGACCCATGAACGCGGTGTTGAGAGATGAAATCCTCAAAGACGATGAAGATGGTGAAGAGGATGAAATTAAATTACATTCCGATCGTATAATTGAGCAATCAGACCAGAGCAACAGATCTACAGCAAAGATCGAGCCGTTATTAAAAGAGCCTTCAACGCATGAGCTAGAAACCAGACCGACGCATCCCAAGTACGCGCACTTGAGGGAGGTCATAAGGCAATTCATTGTCTCCTCTGAGTTGAACCCTGAACGCGACAAAGGCTCCAATGACTCACGCAAGTGTAATAATTGA

mRNA sequence

ATGCAGGCAGGACCTGCGTCTATATATAAAGATACCACTCCTGGACGCGTCCTGATTGACGTCCAAGAAGAAATCTCAACACCCCGCGTGGGTGATCAGGTAAAATTTAATGTAGTTAATGCATTGAAAGAGCCTGATCATTTCCAATCTTGTCAGATAATCGCAGACACCAAGGAGAAGACAAGACCCATGAACGCGGTGTTGAGAGATGAAATCCTCAAAGACGATGAAGATGGTGAAGAGGATGAAATTAAATTACATTCCGATCGTATAATTGAGCAATCAGACCAGAGCAACAGATCTACAGCAAAGATCGAGCCGTTATTAAAAGAGCCTTCAACGCATGAGCTAGAAACCAGACCGACGCATCCCAAGTACGCGCACTTGAGGGAGGTCATAAGGCAATTCATTGTCTCCTCTGAGTTGAACCCTGAACGCGACAAAGGCTCCAATGACTCACGCAAGTGTAATAATTGA

Coding sequence (CDS)

ATGCAGGCAGGACCTGCGTCTATATATAAAGATACCACTCCTGGACGCGTCCTGATTGACGTCCAAGAAGAAATCTCAACACCCCGCGTGGGTGATCAGGTAAAATTTAATGTAGTTAATGCATTGAAAGAGCCTGATCATTTCCAATCTTGTCAGATAATCGCAGACACCAAGGAGAAGACAAGACCCATGAACGCGGTGTTGAGAGATGAAATCCTCAAAGACGATGAAGATGGTGAAGAGGATGAAATTAAATTACATTCCGATCGTATAATTGAGCAATCAGACCAGAGCAACAGATCTACAGCAAAGATCGAGCCGTTATTAAAAGAGCCTTCAACGCATGAGCTAGAAACCAGACCGACGCATCCCAAGTACGCGCACTTGAGGGAGGTCATAAGGCAATTCATTGTCTCCTCTGAGTTGAACCCTGAACGCGACAAAGGCTCCAATGACTCACGCAAGTGTAATAATTGA

Protein sequence

MQAGPASIYKDTTPGRVLIDVQEEISTPRVGDQVKFNVVNALKEPDHFQSCQIIADTKEKTRPMNAVLRDEILKDDEDGEEDEIKLHSDRIIEQSDQSNRSTAKIEPLLKEPSTHELETRPTHPKYAHLREVIRQFIVSSELNPERDKGSNDSRKCNN
Homology
[Close]
BLAST of Cla010560 vs. NCBI nr
Match: gi|985438230|ref|XP_015383504.1| (PREDICTED: uncharacterized protein LOC107176019 [Citrus sinensis])

HSP 1 Score: 60.5 bits (145), Expect = 3.1e-06
Identity = 48/156 (30.77%), Postives = 78/156 (50.00%), Query Frame = 1 

Query: 15  GRVLIDVQEEISTPRVGDQ-VKFNVVNALKEPDHFQSCQIIAD-----TKEKTRPMNAVL 74
           G+ LIDVQ+   T RV DQ V FNV+ A++ PD  + C  ++      T    R  + VL
Sbjct: 440 GKTLIDVQKGELTMRVNDQQVTFNVLEAMRNPDEIEDCNFLSVMDLVVTDRLDRCCSNVL 499

Query: 75  RDEILKDDEDGEEDEIKLHSD-----------RIIEQSDQSNRSTAKIEPLLKEPSTHEL 134
            +++   +E  EED  ++  D           R+IE  + S+R      P ++ P + EL
Sbjct: 500 -NKVTTFEEVEEEDVAEIQIDWMNKQQSNRHSRVIEHLNLSDREVPTTLPSIESPPSFEL 559

Query: 135 ETRPTHPKYAHL-REVIRQFIVSSELNPERDKGSND 153
           +  P+H KYA+L +      I+SS L+  +++   D
Sbjct: 560 KLLPSHLKYAYLGQNNTLPVIISSTLDAGQEQSLVD 594

The following BLAST results are available for this feature:
BLAST of Cla010560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|985438230|ref|XP_015383504.1|3.1e-0630.77PREDICTED: uncharacterized protein LOC107176019 [Citrus sinensis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010560Cla010560.1mRNA