Cla010553 (gene) Watermelon (97103) v1

Overview
NameCla010553
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 9913466 .. 9914197 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCCAGCAACCCACCTCCTCCAAAAGCCCTAAACTTATTGCCTCATCCTCGAGGCATGATAGTCGGAATCTGTCCACTACTTCTACCACACCTAAACCCTTTGCTACTATTCGCCCCAACAGTCCTGAGTTGGAGGCGGCGTCAACCCCATCTCCGCTACGTTCTAGGGACCTGTTTGAAGCTCAAAAGGTGGAAAGAAATGACGAGTCCACCATCTTCGGAGATATTCTAGACACTATTGATGAAGAAGACAATGACTGGTTGGACGGGTTGGTCGACCAGAGGATGAAGAATGTGTCGCGTGGGTCAGTCCCTGTAGTGAGCGGTCTTGAGGAGTCGAATTCCGATGAAAGACCTATTGGAAAGGTAATTGCGACGGTGGAAAAGAAGAAGTCCGCACCAAAAAAGAAAAACAGGCCAATAAGAGCCAGGGAAGAAGAAGTCGAGGAAGATGTCCTTCCGTTAAGAAGAAAAAATGAAAAAGTAAGGGATGCGGGGACATCTGAGGCTATCCCCACATCATCTGTTGAGAGGCTAGCAACGAGGGCGGCAGAGAAGTCCAAGAAGCTGAAAGACAACATCAAAAGAATGAAAGAAAGGACGGAGTCGTTCCTCGCTGCAAAGAAAAGAAGAAAAGAGGAAATCGCATCTGCCGAACAAGCTGCCAAGCAGGCCACCAGAGAAGCTGAGTTTCCCCGCCGCATAATAGAGATTATACGATTGTGA

mRNA sequence

ATGGCTTCCCAGCAACCCACCTCCTCCAAAAGCCCTAAACTTATTGCCTCATCCTCGAGGCATGATAGTCGGAATCTGTCCACTACTTCTACCACACCTAAACCCTTTGCTACTATTCGCCCCAACAGTCCTGAGTTGGAGGCGGCGTCAACCCCATCTCCGCTACGTTCTAGGGACCTGTTTGAAGCTCAAAAGGTGGAAAGAAATGACGAGTCCACCATCTTCGGAGATATTCTAGACACTATTGATGAAGAAGACAATGACTGGTTGGACGGGTTGGTCGACCAGAGGATGAAGAATGTGTCGCGTGGGTCAGTCCCTGTAGTGAGCGGTCTTGAGGAGTCGAATTCCGATGAAAGACCTATTGGAAAGGTAATTGCGACGGTGGAAAAGAAGAAGTCCGCACCAAAAAAGAAAAACAGGCCAATAAGAGCCAGGGAAGAAGAAGTCGAGGAAGATGTCCTTCCGTTAAGAAGAAAAAATGAAAAAGTAAGGGATGCGGGGACATCTGAGGCTATCCCCACATCATCTGTTGAGAGGCTAGCAACGAGGGCGGCAGAGAAGTCCAAGAAGCTGAAAGACAACATCAAAAGAATGAAAGAAAGGACGGAGTCGTTCCTCGCTGCAAAGAAAAGAAGAAAAGAGGAAATCGCATCTGCCGAACAAGCTGCCAAGCAGGCCACCAGAGAAGCTGAGTTTCCCCGCCGCATAATAGAGATTATACGATTGTGA

Coding sequence (CDS)

ATGGCTTCCCAGCAACCCACCTCCTCCAAAAGCCCTAAACTTATTGCCTCATCCTCGAGGCATGATAGTCGGAATCTGTCCACTACTTCTACCACACCTAAACCCTTTGCTACTATTCGCCCCAACAGTCCTGAGTTGGAGGCGGCGTCAACCCCATCTCCGCTACGTTCTAGGGACCTGTTTGAAGCTCAAAAGGTGGAAAGAAATGACGAGTCCACCATCTTCGGAGATATTCTAGACACTATTGATGAAGAAGACAATGACTGGTTGGACGGGTTGGTCGACCAGAGGATGAAGAATGTGTCGCGTGGGTCAGTCCCTGTAGTGAGCGGTCTTGAGGAGTCGAATTCCGATGAAAGACCTATTGGAAAGGTAATTGCGACGGTGGAAAAGAAGAAGTCCGCACCAAAAAAGAAAAACAGGCCAATAAGAGCCAGGGAAGAAGAAGTCGAGGAAGATGTCCTTCCGTTAAGAAGAAAAAATGAAAAAGTAAGGGATGCGGGGACATCTGAGGCTATCCCCACATCATCTGTTGAGAGGCTAGCAACGAGGGCGGCAGAGAAGTCCAAGAAGCTGAAAGACAACATCAAAAGAATGAAAGAAAGGACGGAGTCGTTCCTCGCTGCAAAGAAAAGAAGAAAAGAGGAAATCGCATCTGCCGAACAAGCTGCCAAGCAGGCCACCAGAGAAGCTGAGTTTCCCCGCCGCATAATAGAGATTATACGATTGTGA

Protein sequence

MASQQPTSSKSPKLIASSSRHDSRNLSTTSTTPKPFATIRPNSPELEAASTPSPLRSRDLFEAQKVERNDESTIFGDILDTIDEEDNDWLDGLVDQRMKNVSRGSVPVVSGLEESNSDERPIGKVIATVEKKKSAPKKKNRPIRAREEEVEEDVLPLRRKNEKVRDAGTSEAIPTSSVERLATRAAEKSKKLKDNIKRMKERTESFLAAKKRRKEEIASAEQAAKQATREAEFPRRIIEIIRL
Homology
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BLAST of Cla010553 vs. NCBI nr
Match: gi|1012035791|ref|XP_015953126.1| (PREDICTED: patellin-3-like isoform X1 [Arachis duranensis])

HSP 1 Score: 64.7 bits (156), Expect = 2.6e-07
Identity = 46/170 (27.06%), Postives = 81/170 (47.65%), Query Frame = 1 

Query: 63  AQKVERNDESTIFGDILDTIDEEDNDWLDGLVDQRMKNVSRGSVPVVSGLEESNSDERPI 122
           AQ V   +ES + GD+ +   +  +D L  L+ + +      S P     +E   D++  
Sbjct: 83  AQSVSFKEESYVVGDLPEAQKKALDD-LKNLIQEALNKHELSSPPPPPPPKEE--DKKKE 142

Query: 123 GKVIATVEKKKSAPKKKNRPIRAREEEVEEDVLPLRRKNEKVRDAGTSEAIPTSSVERLA 182
             V A  EKK+ A +KK     A EE+ EE V    +K E V      E +  ++ E   
Sbjct: 143 EAVAAAEEKKEEAEEKKEEAAAAEEEKKEEVVAAEEKKEEVVAAEEKKEEVVAAAEEEKK 202

Query: 183 TRAAEKSKKLKDNIKRMKERTESFLAAKKRRKEEIASAEQAAKQATREAE 233
             AA   ++ K+ +   +E+ E  +AA+++++E +A+AE+  K+     E
Sbjct: 203 EEAAAAEEEKKEEVVAAEEKKEEVVAAEEKKEEVVAAAEEEKKETVEAIE 249

The following BLAST results are available for this feature:
BLAST of Cla010553 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012035791|ref|XP_015953126.1|2.6e-0727.06PREDICTED: patellin-3-like isoform X1 [Arachis duranensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010553Cla010553.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 210..230
score: -coord: 182..202
scor