Cla010540 (gene) Watermelon (97103) v1

Overview
NameCla010540
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 9688250 .. 9688441 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGTGTTATTGGTCGACCGATTTGTATGGATGAGGCTATTGAGGAGCATTGGGGATTGTCTTTAGCTCATCTTTGTGTTAAGATGGGAGTGGAGGATGATTTTCCCCGCTCTATGACGGTTTGGCTGAGGGGAGAGGATTTTGAGGTCCTGATAAAGTATGCTTGGAGGCCACACAAGTGTGCTTAA

mRNA sequence

ATGGCCAGTGTTATTGGTCGACCGATTTGTATGGATGAGGCTATTGAGGAGCATTGGGGATTGTCTTTAGCTCATCTTTGTGTTAAGATGGGAGTGGAGGATGATTTTCCCCGCTCTATGACGGTTTGGCTGAGGGGAGAGGATTTTGAGGTCCTGATAAAGTATGCTTGGAGGCCACACAAGTGTGCTTAA

Coding sequence (CDS)

ATGGCCAGTGTTATTGGTCGACCGATTTGTATGGATGAGGCTATTGAGGAGCATTGGGGATTGTCTTTAGCTCATCTTTGTGTTAAGATGGGAGTGGAGGATGATTTTCCCCGCTCTATGACGGTTTGGCTGAGGGGAGAGGATTTTGAGGTCCTGATAAAGTATGCTTGGAGGCCACACAAGTGTGCTTAA

Protein sequence

MASVIGRPICMDEAIEEHWGLSLAHLCVKMGVEDDFPRSMTVWLRGEDFEVLIKYAWRPHKCA
Homology
[Close]
BLAST of Cla010540 vs. NCBI nr
Match: gi|778681441|ref|XP_011651511.1| (PREDICTED: uncharacterized protein LOC105434909 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 5.6e-07
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 1 

Query: 1   MASVIGRPICMDEAIEEHWGLSLAHLCVKMGVEDDFPRSMTVWLRGEDFEVLIKYAWRPH 60
           +ASVIG+P+ +D A +E   LS A +CV++ V+      + V LRGEDF V I Y W+P 
Sbjct: 98  VASVIGKPLTLDLATKERRRLSYARVCVELNVDSPMRADIIVNLRGEDFIVTINYEWKPQ 157

Query: 61  KC 63
           KC
Sbjct: 158 KC 159

[Close]
BLAST of Cla010540 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-07
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1 

Query: 1   MASVIGRPICMDEAIEEHWGLSLAHLCVKMGVEDDFPRSMTVWLRGEDFEVLIKYAWRPH 60
           +AS +G+PI +D A +E   LS A +CVK+  +   P  +TV LRG DF V I Y W+P 
Sbjct: 235 VASAVGKPITLDLATKERRRLSYARVCVKLDGDSHMPAEITVSLRGVDFIVSINYEWKPW 294

Query: 61  KC 63
           KC
Sbjct: 295 KC 296

[Close]
BLAST of Cla010540 vs. NCBI nr
Match: gi|659126448|ref|XP_008463187.1| (PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-07
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1 

Query: 1   MASVIGRPICMDEAIEEHWGLSLAHLCVKMGVEDDFPRSMTVWLRGEDFEVLIKYAWRPH 60
           +AS +G+PI +D A +E   LS A +CV++    + P  +TV LRG DF V + Y W+P 
Sbjct: 263 VASAVGKPISLDLATKERRRLSYARVCVELEAGSNMPAEITVSLRGVDFNVSVNYEWKPR 322

Query: 61  KC 63
           KC
Sbjct: 323 KC 324

[Close]
BLAST of Cla010540 vs. NCBI nr
Match: gi|659121150|ref|XP_008460523.1| (PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 4.7e-06
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1 

Query: 1   MASVIGRPICMDEAIEEHWGLSLAHLCVKMGVEDDFPRSMTVWLRGEDFEVLIKYAWRPH 60
           +A  +G+PI +D A +E   LS A +CV++    + P  +TV LRG +F V +KY W+P 
Sbjct: 383 VAGAVGKPISLDLATKERRRLSYARVCVELEGGSNMPSEITVNLRGVEFNVSVKYEWKPR 442

Query: 61  KC 63
           KC
Sbjct: 443 KC 444

The following BLAST results are available for this feature:
BLAST of Cla010540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778681441|ref|XP_011651511.1|5.6e-0746.77PREDICTED: uncharacterized protein LOC105434909 [Cucumis sativus][more]
gi|659114595|ref|XP_008457134.1|7.3e-0746.77PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo][more]
gi|659126448|ref|XP_008463187.1|7.3e-0743.55PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo][more]
gi|659121150|ref|XP_008460523.1|4.7e-0641.94PREDICTED: uncharacterized protein LOC103499323 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010540Cla010540.1mRNA