Cla010493 (gene) Watermelon (97103) v1

Overview
NameCla010493
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTy3-gypsy retrotransposon protein (AHRD V1 ***- E5GBB0_CUCME)
LocationChr2 : 11779287 .. 11779817 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCCAAAGATAATTGTTCTAAAACTTCAAGTGACACTTACAGAAGACTAACTACTCATAGCGGCTCCAAGGAAATGCAACAATTTAATGAGCAACCAACCTTTGAGATCACAAGGAACATATGGGAGTGGCTCTCGAGGGACCCAAAAGTTGGGGTCGGCATCAGAGAAAATCTTGCACTTGAGAAGCACATCTCAACTTCTGAACAATCAAGCAAGGAGGCATCACACCCAAATATAATGTCAGTCATGATGGCCAATGTGGGAACTAGTGAAGAAAGGATGGTTGAGCTCGAAAGGAAAGTTAGCATGTTGTTAAAGGCAGTTGAAGAAAGGGATTATGAAATTGCATCTCTCAAGAATCATATTGAGAGTCGTGTTGAATCAAGCCATACACTCGCAGTCAAGAACAATAGGGAAGAATGTTTTACAAGAAAGTCAACCACAAGATTCAACTTCAATTGCTTCGTTGTTTGTTCAACAATTGCAGGAGATGATTGCAAACTCCATCAAGGCTTAATATGGTAG

mRNA sequence

ATGACATCCAAAGATAATTGTTCTAAAACTTCAAGTGACACTTACAGAAGACTAACTACTCATAGCGGCTCCAAGGAAATGCAACAATTTAATGAGCAACCAACCTTTGAGATCACAAGGAACATATGGGAGTGGCTCTCGAGGGACCCAAAAGTTGGGGTCGGCATCAGAGAAAATCTTGCACTTGAGAAGCACATCTCAACTTCTGAACAATCAAGCAAGGAGGCATCACACCCAAATATAATGTCAGTCATGATGGCCAATGTGGGAACTAGTGAAGAAAGGATGGTTGAGCTCGAAAGGAAAGTTAGCATGTTGTTAAAGGCAGTTGAAGAAAGGGATTATGAAATTGCATCTCTCAAGAATCATATTGAGAGTCGTGTTGAATCAAGCCATACACTCGCAGTCAAGAACAATAGGGAAGAATGTTTTACAAGAAAGTCAACCACAAGATTCAACTTCAATTGCTTCGTTGTTTGTTCAACAATTGCAGGAGATGATTGCAAACTCCATCAAGGCTTAATATGGTAG

Coding sequence (CDS)

ATGACATCCAAAGATAATTGTTCTAAAACTTCAAGTGACACTTACAGAAGACTAACTACTCATAGCGGCTCCAAGGAAATGCAACAATTTAATGAGCAACCAACCTTTGAGATCACAAGGAACATATGGGAGTGGCTCTCGAGGGACCCAAAAGTTGGGGTCGGCATCAGAGAAAATCTTGCACTTGAGAAGCACATCTCAACTTCTGAACAATCAAGCAAGGAGGCATCACACCCAAATATAATGTCAGTCATGATGGCCAATGTGGGAACTAGTGAAGAAAGGATGGTTGAGCTCGAAAGGAAAGTTAGCATGTTGTTAAAGGCAGTTGAAGAAAGGGATTATGAAATTGCATCTCTCAAGAATCATATTGAGAGTCGTGTTGAATCAAGCCATACACTCGCAGTCAAGAACAATAGGGAAGAATGTTTTACAAGAAAGTCAACCACAAGATTCAACTTCAATTGCTTCGTTGTTTGTTCAACAATTGCAGGAGATGATTGCAAACTCCATCAAGGCTTAATATGGTAG

Protein sequence

MTSKDNCSKTSSDTYRRLTTHSGSKEMQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHISTSEQSSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASLKNHIESRVESSHTLAVKNNREECFTRKSTTRFNFNCFVVCSTIAGDDCKLHQGLIW
Homology
[Close]
BLAST of Cla010493 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-32
Identity = 76/134 (56.72%), Postives = 100/134 (74.63%), Query Frame = 1 

Query: 1   MTSKDNCSKTSSDTYRRLTTHSGSKEMQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENL 60
           MTS+ N SK  SD  +R  T S S+E+Q   +   FE+ +NIWE +S+ PK G+ I+EN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  ALEKHISTSEQSSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASL 120
           A++KH S SE S++EA  PNIMSVM+ +V TSE RMVELE+KV+ML+KAVEERD++IASL
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASL 120

Query: 121 KNHIESRVESSHTL 135
           KNHIESR  +  T+
Sbjct: 121 KNHIESRDTAESTV 134

[Close]
BLAST of Cla010493 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 49/118 (41.53%), Postives = 73/118 (61.86%), Query Frame = 1 

Query: 11  SSDTYRRLTTHSGSKEMQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHISTSE 70
           ++D+Y  L T S SK   Q  EQ +  + +  WE L   PK G+ IREN         S 
Sbjct: 13  TNDSYTGLVTQSHSKRSIQEQEQSSV-LKKKSWEQLIESPKGGINIRENPLFNNSTPASN 72

Query: 71  QSSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASLKNHIESRV 129
            S KE SH  ++SV+MA V T+E  MVE+ERK++ L+KAV++RD+EI +L++ +++ V
Sbjct: 73  LSDKE-SHLEVVSVIMAAV-TAETTMVEMERKINFLMKAVKDRDHEITALEDQMKACV 127

[Close]
BLAST of Cla010493 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.0e-12
Identity = 53/133 (39.85%), Postives = 78/133 (58.65%), Query Frame = 1 

Query: 8   SKTSSDTYRRLTTHSGSKE-MQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHI 67
           S  +SD+Y  L T S  K  MQ+  ++  F + +   E L   PK G+ IR+N       
Sbjct: 10  SSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNST 69

Query: 68  STSEQSSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASLKNHIES 127
             S  S K ASH  ++SVMM +V T+E  + E+ERK++ L+K +EERD+EIA+LK+ +++
Sbjct: 70  PASNLSDK-ASHLEVVSVMMVDV-TAEATVTEMERKINFLMKVIEERDHEIAALKDQMKA 129

Query: 128 --RVESSHTLAVK 138
               ESS T  VK
Sbjct: 130 CETGESSQTPVVK 140

[Close]
BLAST of Cla010493 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-12
Identity = 49/109 (44.95%), Postives = 63/109 (57.80%), Query Frame = 1 

Query: 12  SDTYRRLTTHSGSKEMQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHISTSEQ 71
           +DTY RL   S SK   Q  EQ +  + +  WE L   PK G+ I+EN   E     S  
Sbjct: 14  NDTYTRLIVQSHSKRSTQKQEQNSV-LAKKSWEQLMESPKCGIIIKENPLFEDSTPASNL 73

Query: 72  SSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASL 121
           S KE SH  ++S+MMA+V T E  MVE+E K++ L+K VEERDY I  L
Sbjct: 74  SEKE-SHLEVVSIMMADV-TVEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]
BLAST of Cla010493 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.2e-09
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = 1 

Query: 32  EQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHISTSEQSSKEASHPNIMSVMMANVGT 91
           ++  F + +   E L    K G+ IR+N        TS  S KE SH  ++SVMM +V T
Sbjct: 4   QEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKE-SHLEVVSVMMIDV-T 63

Query: 92  SEERMVELERKVSMLLKAVEERDYEIASLKNHIES--RVESSHTLAVK 138
           +E  M E+E+K++ L+K VEERD+EIA+LK+ +++    ESS T  VK
Sbjct: 64  AEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVK 109

[Close]
BLAST of Cla010493 vs. NCBI nr
Match: gi|307135887|gb|ADN33752.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 147.5 bits (371), Expect = 2.2e-32
Identity = 76/134 (56.72%), Postives = 100/134 (74.63%), Query Frame = 1 

Query: 1   MTSKDNCSKTSSDTYRRLTTHSGSKEMQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENL 60
           MTS+ N SK  SD  +R  T S S+E+Q   +   FE+ +NIWE +S+ PK G+ I+EN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  ALEKHISTSEQSSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASL 120
           A++KH S SE S++EA  PNIMSVM+ +V TSE RMVELE+KV+ML+KAVEERD++IASL
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASL 120

Query: 121 KNHIESRVESSHTL 135
           KNHIESR  +  T+
Sbjct: 121 KNHIESRDTAESTV 134

[Close]
BLAST of Cla010493 vs. NCBI nr
Match: gi|307136319|gb|ADN34142.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 49/118 (41.53%), Postives = 73/118 (61.86%), Query Frame = 1 

Query: 11  SSDTYRRLTTHSGSKEMQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHISTSE 70
           ++D+Y  L T S SK   Q  EQ +  + +  WE L   PK G+ IREN         S 
Sbjct: 13  TNDSYTGLVTQSHSKRSIQEQEQSSV-LKKKSWEQLIESPKGGINIRENPLFNNSTPASN 72

Query: 71  QSSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASLKNHIESRV 129
            S KE SH  ++SV+MA V T+E  MVE+ERK++ L+KAV++RD+EI +L++ +++ V
Sbjct: 73  LSDKE-SHLEVVSVIMAAV-TAETTMVEMERKINFLMKAVKDRDHEITALEDQMKACV 127

[Close]
BLAST of Cla010493 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 80.1 bits (196), Expect = 4.3e-12
Identity = 53/133 (39.85%), Postives = 78/133 (58.65%), Query Frame = 1 

Query: 8   SKTSSDTYRRLTTHSGSKE-MQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHI 67
           S  +SD+Y  L T S  K  MQ+  ++  F + +   E L   PK G+ IR+N       
Sbjct: 10  SSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNST 69

Query: 68  STSEQSSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASLKNHIES 127
             S  S K ASH  ++SVMM +V T+E  + E+ERK++ L+K +EERD+EIA+LK+ +++
Sbjct: 70  PASNLSDK-ASHLEVVSVMMVDV-TAEATVTEMERKINFLMKVIEERDHEIAALKDQMKA 129

Query: 128 --RVESSHTLAVK 138
               ESS T  VK
Sbjct: 130 CETGESSQTPVVK 140

[Close]
BLAST of Cla010493 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 79.0 bits (193), Expect = 9.5e-12
Identity = 49/109 (44.95%), Postives = 63/109 (57.80%), Query Frame = 1 

Query: 12  SDTYRRLTTHSGSKEMQQFNEQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHISTSEQ 71
           +DTY RL   S SK   Q  EQ +  + +  WE L   PK G+ I+EN   E     S  
Sbjct: 14  NDTYTRLIVQSHSKRSTQKQEQNSV-LAKKSWEQLMESPKCGIIIKENPLFEDSTPASNL 73

Query: 72  SSKEASHPNIMSVMMANVGTSEERMVELERKVSMLLKAVEERDYEIASL 121
           S KE SH  ++S+MMA+V T E  MVE+E K++ L+K VEERDY I  L
Sbjct: 74  SEKE-SHLEVVSIMMADV-TVEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]
BLAST of Cla010493 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 69.3 bits (168), Expect = 7.5e-09
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = 1 

Query: 32  EQPTFEITRNIWEWLSRDPKVGVGIRENLALEKHISTSEQSSKEASHPNIMSVMMANVGT 91
           ++  F + +   E L    K G+ IR+N        TS  S KE SH  ++SVMM +V T
Sbjct: 4   QEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKE-SHLEVVSVMMIDV-T 63

Query: 92  SEERMVELERKVSMLLKAVEERDYEIASLKNHIES--RVESSHTLAVK 138
           +E  M E+E+K++ L+K VEERD+EIA+LK+ +++    ESS T  VK
Sbjct: 64  AEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVK 109

The following BLAST results are available for this feature:
BLAST of Cla010493 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB0_CUCME1.5e-3256.72Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCE3_CUCME1.0e-1241.53Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCP6_CUCME3.0e-1239.85Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCM2_CUCME6.6e-1244.95Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB67_CUCME5.2e-0940.74Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cla010493 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135887|gb|ADN33752.1|2.2e-3256.72ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307136319|gb|ADN34142.1|1.5e-1241.53hypothetical protein [Cucumis melo subsp. melo][more]
gi|307136441|gb|ADN34247.1|4.3e-1239.85ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307136413|gb|ADN34221.1|9.5e-1244.95hypothetical protein [Cucumis melo subsp. melo][more]
gi|307135838|gb|ADN33709.1|7.5e-0940.74retrotransposon gag protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010493Cla010493.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla010493Cucumber (Chinese Long) v3cucwmB155
Cla010493Cucumber (Chinese Long) v3cucwmB548
Cla010493Cucumber (Chinese Long) v3cucwmB629
Cla010493Watermelon (97103) v2wmwmbB325
Cla010493Watermelon (97103) v2wmwmbB329
Cla010493Wax gourdwgowmB284
Cla010493Wax gourdwgowmB381
Cla010493Watermelon (97103) v1wmwmB157
Cla010493Cucumber (Gy14) v1cgywmB028
Cla010493Cucumber (Gy14) v1cgywmB072
Cla010493Cucumber (Gy14) v1cgywmB263
Cla010493Cucurbita maxima (Rimu)cmawmB126
Cla010493Cucurbita maxima (Rimu)cmawmB502
Cla010493Cucurbita maxima (Rimu)cmawmB525
Cla010493Cucurbita maxima (Rimu)cmawmB594
Cla010493Cucurbita moschata (Rifu)cmowmB115
Cla010493Cucurbita moschata (Rifu)cmowmB495
Cla010493Cucurbita moschata (Rifu)cmowmB525
Cla010493Cucurbita moschata (Rifu)cmowmB587
Cla010493Melon (DHL92) v3.5.1mewmB124
Cla010493Melon (DHL92) v3.5.1mewmB246
Cla010493Watermelon (Charleston Gray)wcgwmB164
Cla010493Watermelon (Charleston Gray)wcgwmB211
Cla010493Watermelon (Charleston Gray)wcgwmB207
Cla010493Cucumber (Chinese Long) v2cuwmB142
Cla010493Cucumber (Chinese Long) v2cuwmB597
Cla010493Cucurbita pepo (Zucchini)cpewmB267
Cla010493Cucurbita pepo (Zucchini)cpewmB291
Cla010493Cucurbita pepo (Zucchini)cpewmB672
Cla010493Cucurbita pepo (Zucchini)cpewmB725
Cla010493Bottle gourd (USVL1VR-Ls)lsiwmB067
Cla010493Bottle gourd (USVL1VR-Ls)lsiwmB102
Cla010493Cucumber (Gy14) v2cgybwmB135
Cla010493Cucumber (Gy14) v2cgybwmB559
Cla010493Melon (DHL92) v3.6.1medwmB119
Cla010493Melon (DHL92) v3.6.1medwmB240
Cla010493Melon (DHL92) v3.6.1medwmB583
Cla010493Silver-seed gourdcarwmB0031
Cla010493Silver-seed gourdcarwmB0326
Cla010493Silver-seed gourdcarwmB0881