Cla010490 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010490
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Retrotransposon protein (AHRD V1 ***- E5GCB5_CUCME)
Location	Chr2 : 11706227 .. 11706514 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGTCAGTCGAGATTCGGTTGGAACGAAGAGTTCAAATGTGTCCAGGTCGAGAGGGAGATTTTCGATCTTTGGGTTTGGGCAAGATTCTAAAAAACAATATCTAATGTCACGTGTTAAATATGTAAATATTAATAATATGTACGTGTAAAAATGCAGAGTCATCCCAGTGCAAAGGGGATGTGGAACAAGCCGTTCCCCCATTACGATGACCTCTCCACCATCTTTGGGAAGGATAGAGCTATAGGGCAATCAAGTGAGGACTCACACGTGATTGGCAAGTAA

mRNA sequence

ATGTTAGGTCAGTCGAGATTCGGTTGGAACGAAGAGTTCAAATGTGTCCAGGTCGAGAGGGAGATTTTCGATCTTTGGAGTCATCCCAGTGCAAAGGGGATGTGGAACAAGCCGTTCCCCCATTACGATGACCTCTCCACCATCTTTGGGAAGGATAGAGCTATAGGGCAATCAAGTGAGGACTCACACGTGATTGGCAAGTAA

Coding sequence (CDS)

ATGTTAGGTCAGTCGAGATTCGGTTGGAACGAAGAGTTCAAATGTGTCCAGGTCGAGAGGGAGATTTTCGATCTTTGGAGTCATCCCAGTGCAAAGGGGATGTGGAACAAGCCGTTCCCCCATTACGATGACCTCTCCACCATCTTTGGGAAGGATAGAGCTATAGGGCAATCAAGTGAGGACTCACACGTGATTGGCAAGTAA

Protein sequence

MLGQSRFGWNEEFKCVQVEREIFDLWSHPSAKGMWNKPFPHYDDLSTIFGKDRAIGQSSEDSHVIGK

Homology

[Close]

BLAST of Cla010490 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.6e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 5   SRFGWNEEFKCVQVEREIFDLWSHPSAKGMWNKPFPHYDDLSTIFGKDRAIGQSSEDSHV 64
           S FGWN+E KC+  E+E+FD WSHP+AKG+ NK F HYD+LS +FGKDRA G  +E    
Sbjct: 444 SGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD 503

Query: 65  IG 67
           IG
Sbjct: 504 IG 505

[Close]

BLAST of Cla010490 vs. TrEMBL
Match: A0A072TE22_MEDTR (Myb/SANT-like DNA-binding domain protein (Fragment) OS=Medicago truncatula GN=MTR_0697s0010 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.5e-12
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 3   GQSRFGWNEEFKCVQVEREIFDLW--SHPSAKGMWNKPFPHYDDLSTIFGKDRAIGQSSE 62
           G S FGWN+  K ++VE+EI+  W  SHP+A G++ KPFPHYD L T+FGKD+A G  +E
Sbjct: 92  GASGFGWNDAKKMIKVEKEIYHQWCKSHPTAVGLYKKPFPHYDSLDTVFGKDKAAGTVTE 151

[Close]

BLAST of Cla010490 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-11
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1


Query: 1   MLGQ--SRFGWNEEFKCVQVEREIFDLW--SHPSAKGMWNKPFPHYDDLSTIFGKDRAIG 60
           MLG   S FGWN+E KC+  E+E+FD W  S P+AKG+ N PFP+YD+L+ +FG+DRA G
Sbjct: 401 MLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATG 460

Query: 61  QSSEDSHVIG 67
           + +E    +G
Sbjct: 461 RFAETFADVG 470

[Close]

BLAST of Cla010490 vs. TrEMBL
Match: I3SNR9_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.8e-11
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 3   GQSRFGWNEEFKCVQVEREIFDLW--SHPSAKGMWNKPFPHYDDLSTIFGKDRAIGQSSE 62
           G S FGW++  K ++VE+EI+  W  SHP+A G++NKPFPHYD L  +FGKD+A+   +E
Sbjct: 92  GASGFGWDDAKKMIKVEKEIYRQWCKSHPTAVGLYNKPFPHYDSLDIVFGKDKAVDTVTE 151

[Close]

BLAST of Cla010490 vs. TrEMBL
Match: A0A072UYX1_MEDTR (Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.2e-11
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1


Query: 1   MLGQSR--FGWNEEFKCVQVEREIFDLW--SHPSAKGMWNKPFPHYDDLSTIFGKDRAIG 60
           MLG S   FGWN+  K + VE+E++  W  SHP+A G++ KPFPHY+ L  +FGKD+A G
Sbjct: 88  MLGPSASGFGWNDATKTIVVEKEVYRQWCKSHPNATGLFGKPFPHYERLHNVFGKDKACG 147

Query: 61  QSSED 62
            +SED
Sbjct: 148 DTSED 152

[Close]

BLAST of Cla010490 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 84.7 bits (208), Expect = 6.6e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1


Query: 5   SRFGWNEEFKCVQVEREIFDLWSHPSAKGMWNKPFPHYDDLSTIFGKDRAIGQSSEDSHV 64
           S FGWN+E KC+  E+E+FD WSHP+AKG+ NK F HYD+LS +FGKDRA G  +E    
Sbjct: 444 SGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFAD 503

Query: 65  IG 67
           IG
Sbjct: 504 IG 505

[Close]

BLAST of Cla010490 vs. NCBI nr
Match: gi|672208170|ref|XP_008780089.1| (PREDICTED: uncharacterized protein LOC103699870, partial [Phoenix dactylifera])

HSP 1 Score: 84.3 bits (207), Expect = 8.6e-14
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 1   MLGQ--SRFGWNEEFKCVQVEREIFDLW--SHPSAKGMWNKPFPHYDDLSTIFGKDRAIG 60
           MLG   SRFGWN+  KCV V+++++DLW  SHP   G+ NKPFP+Y+DLS +FGKDRA G
Sbjct: 98  MLGPNCSRFGWNDREKCVVVDKDVYDLWVKSHPHVAGLRNKPFPYYEDLSIVFGKDRANG 157

Query: 61  QSSED 62
           + +ED
Sbjct: 158 EGAED 162

[Close]

BLAST of Cla010490 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 8.6e-14
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1


Query: 5   SRFGWNEEFKCVQVEREIFDLW--SHPSAKGMWNKPFPHYDDLSTIFGKDRAIGQSSEDS 64
           S FGWNEEF+C+  ER++FD W  SHP+AKG+ +K FP+YDDLS +FGKDRA G  SE  
Sbjct: 90  SGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETF 149

Query: 65  HVIG 67
             +G
Sbjct: 150 PNVG 153

[Close]

BLAST of Cla010490 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-13
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 7   FGWNEEFKCVQVEREIFDLWSHPSAKGMWNKPFPHYDDLSTIFGKDRAIGQSSEDSHVIG 66
           FGWN+E KC+  E+E+FD WSHP+AKG+ NK F HYD+LS +FGKDRA G  +E    IG
Sbjct: 432 FGWNDEKKCIVAEKEVFDDWSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIG 491

[Close]

BLAST of Cla010490 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-13
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1


Query: 5  SRFGWNEEFKCVQVEREIFDLWSHPSAKGMWNKPFPHYDDLSTIFGKDRAIGQSSEDSHV 64
          S FGWN+E KC+  E+E+FD WSHP+AKG+ NK FPHYD+LS +F KD A G  +E    
Sbjct: 38 SGFGWNDEQKCIVAEKEVFDDWSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFAD 97

Query: 65 IG 67
          +G
Sbjct: 98 VG 99

The following BLAST results are available for this feature:

BLAST of Cla010490 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB5_CUCME	4.6e-14	59.68	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A072TE22_MEDTR	2.5e-12	55.74	Myb/SANT-like DNA-binding domain protein (Fragment) OS=Medicago truncatula GN=MT...	[more]
E5GBB2_CUCME	1.6e-11	51.43	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
I3SNR9_MEDTR	2.8e-11	52.46	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]
A0A072UYX1_MEDTR	6.2e-11	52.31	Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 ...	[more]

BLAST of Cla010490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136287\|gb\|ADN34114.1\|	6.6e-14	59.68	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|672208170\|ref\|XP_008780089.1\|	8.6e-14	58.46	PREDICTED: uncharacterized protein LOC103699870, partial [Phoenix dactylifera]	[more]
gi\|659082641\|ref\|XP_008441954.1\|	8.6e-14	59.38	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|659126986\|ref\|XP_008463462.1\|	1.1e-13	60.00	PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo]	[more]
gi\|659123900\|ref\|XP_008461893.1\|	1.5e-13	56.45	PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010490	Cla010490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31704	FAMILY NOT NAMED	coord: 1..60 score: 2.4
None	No IPR available	PANTHER	PTHR31704:SF16	SUBFAMILY NOT NAMED	coord: 1..60 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010490	Cucumber (Gy14) v2	cgybwmB135
Cla010490	Cucumber (Gy14) v2	cgybwmB559
Cla010490	Melon (DHL92) v3.6.1	medwmB119
Cla010490	Melon (DHL92) v3.6.1	medwmB240
Cla010490	Melon (DHL92) v3.6.1	medwmB583
Cla010490	Silver-seed gourd	carwmB0031
Cla010490	Silver-seed gourd	carwmB0326
Cla010490	Silver-seed gourd	carwmB0881
Cla010490	Cucumber (Chinese Long) v3	cucwmB155
Cla010490	Cucumber (Chinese Long) v3	cucwmB548
Cla010490	Cucumber (Chinese Long) v3	cucwmB629
Cla010490	Watermelon (97103) v2	wmwmbB325
Cla010490	Watermelon (97103) v2	wmwmbB329
Cla010490	Wax gourd	wgowmB284
Cla010490	Wax gourd	wgowmB381
Cla010490	Watermelon (97103) v1	wmwmB157
Cla010490	Cucumber (Gy14) v1	cgywmB028
Cla010490	Cucumber (Gy14) v1	cgywmB072
Cla010490	Cucumber (Gy14) v1	cgywmB263
Cla010490	Cucurbita maxima (Rimu)	cmawmB126
Cla010490	Cucurbita maxima (Rimu)	cmawmB502
Cla010490	Cucurbita maxima (Rimu)	cmawmB525
Cla010490	Cucurbita maxima (Rimu)	cmawmB594
Cla010490	Cucurbita moschata (Rifu)	cmowmB115
Cla010490	Cucurbita moschata (Rifu)	cmowmB495
Cla010490	Cucurbita moschata (Rifu)	cmowmB525
Cla010490	Cucurbita moschata (Rifu)	cmowmB587
Cla010490	Melon (DHL92) v3.5.1	mewmB124
Cla010490	Melon (DHL92) v3.5.1	mewmB246
Cla010490	Watermelon (Charleston Gray)	wcgwmB164
Cla010490	Watermelon (Charleston Gray)	wcgwmB211
Cla010490	Watermelon (Charleston Gray)	wcgwmB207
Cla010490	Cucumber (Chinese Long) v2	cuwmB142
Cla010490	Cucumber (Chinese Long) v2	cuwmB597
Cla010490	Cucurbita pepo (Zucchini)	cpewmB267
Cla010490	Cucurbita pepo (Zucchini)	cpewmB291
Cla010490	Cucurbita pepo (Zucchini)	cpewmB672
Cla010490	Cucurbita pepo (Zucchini)	cpewmB725
Cla010490	Bottle gourd (USVL1VR-Ls)	lsiwmB067
Cla010490	Bottle gourd (USVL1VR-Ls)	lsiwmB102