Cla010461 (gene) Watermelon (97103) v1

Overview
NameCla010461
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr2 : 10915670 .. 10915930 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTGTGGGTAACAATCAAAAACTCACCCCCAAGTCAAAAATGTTGCTGCAAGACACCCAGCCGTCAGAAACGTGACGCACAGCTTGTTGTTCACGCTGGAGTCTCAAACGGAAAAGAAACGATGCTTCGAAACTTGTTCAAAGTGGGTGTTCACGTCACAGGTAGCTCCGCTGTCGAAGGTGGAGCACGAGCACATTGGTCTGAATCGTCTGACGTGCGAGGACTGGACGCTGCAGCTCGTGGGTTTGTTGTGTAG

mRNA sequence

ATGGAAGTGTGGGTAACAATCAAAAACTCACCCCCAAGTCAAAAATGTTGCTGCAAGACACCCAGCCGTCAGAAACGTGACGCACAGCTTGTTGTTCACGCTGGAGTCTCAAACGGAAAAGAAACGATGCTTCGAAACTTGTTCAAAGTGGGTGTTCACGTCACAGGTAGCTCCGCTGTCGAAGGTGGAGCACGAGCACATTGGTCTGAATCGTCTGACGTGCGAGGACTGGACGCTGCAGCTCGTGGGTTTGTTGTGTAG

Coding sequence (CDS)

ATGGAAGTGTGGGTAACAATCAAAAACTCACCCCCAAGTCAAAAATGTTGCTGCAAGACACCCAGCCGTCAGAAACGTGACGCACAGCTTGTTGTTCACGCTGGAGTCTCAAACGGAAAAGAAACGATGCTTCGAAACTTGTTCAAAGTGGGTGTTCACGTCACAGGTAGCTCCGCTGTCGAAGGTGGAGCACGAGCACATTGGTCTGAATCGTCTGACGTGCGAGGACTGGACGCTGCAGCTCGTGGGTTTGTTGTGTAG

Protein sequence

MEVWVTIKNSPPSQKCCCKTPSRQKRDAQLVVHAGVSNGKETMLRNLFKVGVHVTGSSAVEGGARAHWSESSDVRGLDAAARGFVV
Homology
[Close]
BLAST of Cla010461 vs. TrEMBL
Match: A0A0A0LT13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181290 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-08
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 

Query: 1  MEVWVTI-KNSPPSQKCCCKTPSRQKRDAQLVVHAGVSNGKETMLR 46
          + VW+T  K   PSQKCCCK P R+KRDAQLVV  GVSNG++TMLR
Sbjct: 44 IRVWITAAKTLRPSQKCCCKKPRRRKRDAQLVVLVGVSNGEKTMLR 89

[Close]
BLAST of Cla010461 vs. NCBI nr
Match: gi|700209919|gb|KGN65015.1| (hypothetical protein Csa_1G181290 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 6.9e-08
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 

Query: 1  MEVWVTI-KNSPPSQKCCCKTPSRQKRDAQLVVHAGVSNGKETMLR 46
          + VW+T  K   PSQKCCCK P R+KRDAQLVV  GVSNG++TMLR
Sbjct: 44 IRVWITAAKTLRPSQKCCCKKPRRRKRDAQLVVLVGVSNGEKTMLR 89

The following BLAST results are available for this feature:
BLAST of Cla010461 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT13_CUCSA4.8e-0867.39Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181290 PE=4 SV=1[more]
BLAST of Cla010461 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209919|gb|KGN65015.1|6.9e-0867.39hypothetical protein Csa_1G181290 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010461Cla010461.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla010461ClCG02G008800Watermelon (Charleston Gray)wcgwmB207
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla010461Silver-seed gourdcarwmB0031
Cla010461Silver-seed gourdcarwmB0326
Cla010461Silver-seed gourdcarwmB0881
Cla010461Cucumber (Chinese Long) v3cucwmB155
Cla010461Cucumber (Chinese Long) v3cucwmB548
Cla010461Cucumber (Chinese Long) v3cucwmB629
Cla010461Watermelon (97103) v2wmwmbB325
Cla010461Watermelon (97103) v2wmwmbB329
Cla010461Wax gourdwgowmB284
Cla010461Wax gourdwgowmB381
Cla010461Wax gourdwgowmB462
Cla010461Watermelon (97103) v1wmwmB157
Cla010461Cucumber (Gy14) v1cgywmB028
Cla010461Cucumber (Gy14) v1cgywmB072
Cla010461Cucumber (Gy14) v1cgywmB263
Cla010461Cucurbita maxima (Rimu)cmawmB126
Cla010461Cucurbita maxima (Rimu)cmawmB502
Cla010461Cucurbita maxima (Rimu)cmawmB525
Cla010461Cucurbita maxima (Rimu)cmawmB594
Cla010461Cucurbita moschata (Rifu)cmowmB115
Cla010461Cucurbita moschata (Rifu)cmowmB495
Cla010461Cucurbita moschata (Rifu)cmowmB525
Cla010461Cucurbita moschata (Rifu)cmowmB587
Cla010461Melon (DHL92) v3.5.1mewmB124
Cla010461Melon (DHL92) v3.5.1mewmB246
Cla010461Watermelon (Charleston Gray)wcgwmB164
Cla010461Watermelon (Charleston Gray)wcgwmB211
Cla010461Cucumber (Chinese Long) v2cuwmB142
Cla010461Cucumber (Chinese Long) v2cuwmB597
Cla010461Cucurbita pepo (Zucchini)cpewmB267
Cla010461Cucurbita pepo (Zucchini)cpewmB291
Cla010461Cucurbita pepo (Zucchini)cpewmB672
Cla010461Cucurbita pepo (Zucchini)cpewmB725
Cla010461Bottle gourd (USVL1VR-Ls)lsiwmB067
Cla010461Bottle gourd (USVL1VR-Ls)lsiwmB102
Cla010461Cucumber (Gy14) v2cgybwmB135
Cla010461Cucumber (Gy14) v2cgybwmB559
Cla010461Melon (DHL92) v3.6.1medwmB119
Cla010461Melon (DHL92) v3.6.1medwmB240
Cla010461Melon (DHL92) v3.6.1medwmB583