Cla010233 (gene) Watermelon (97103) v1

Overview
NameCla010233
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRetrotransposon protein (AHRD V1 ***- E5GCB5_CUCME)
LocationChr9 : 28897232 .. 28902602 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCAGAGCAGACGACATGGGACGTTGAAGCCCTCTCTTGCCGCTCTAACGGCGGAAATGGTGGCTCTTGCCGCCGTCGATTGCTTGGTAGGTGGTCCCCATGCGCCGGTTTTGGGCTTTGGTAGCGGAGGGCTCCTCCCAACTTACACGGTTAGTATGTGGTTTTTTTTTCATCTTCTGGTGTTGCATGTTCATTGTTCGATTCTTTGTTTTTTCCATGTGTTCGGCTGATATTTGGTGCAAATCTGTTTGCCATTTTTTTCTTCTTCCGAGATCTGTTGTTTTATGATGTTTTCCTATTGTCCGCTATCTTGTTGCACGTTTATCATGCTCATTTTTGGTGTTGCATGTTCATATATTGGTTAGTTTTTTTTTTCCGACATTCGACCAAGACTTGGTGTTGAGCTGTGTTCTATTCTGATTTCATTTTTTCCTTCGGAGGTCTGGTGTTGCATATTTTTATCCCCTTCTGATTGTGTTGCATGTGTATAGATTGATTGTTTCAATTTTTTTTTGGTCATGTTCGGATGGGTTTGCATTTTGTTACTTTATTCCTTCCATTTTTTGGCCGATGATGATGGGTTTTTCAATTTTCAGTCAATCTGTTTTAGCTGGATAATTTTCTCTCCTCGATTATCATTTCCAATTCTACAAATTTCATCTTATCTTTTTGAATGAAAATTTGTTTGAAGCATGCTGAATTTTTTCTTCATTTTTACCCGTTGATCGGTTTTGTTGCTATGTTCTGTTTCTATTTTTGAACAAAAATCGATTGTTTATTGTTGTTTTTCTTGAATAACCACATCTGGGGCCGCCATTTAAAAAAAAAAAACATTACAATTGAGTAGTTGGATAGCTAGTTTCATTATGACTGATTTAGTTGGATCACAACTATTTTGTTATTATTATATTATTATAATTTGGTTGTTGGTTTTTTAAATTTGGGTCACTTCCATTTAAAACTTGCACTGTTCCTCAAATTAATTTGAGTGGTTGGGTTGTTTAACTTCATTAATTCACATGCTTATATATACACCTATTTTCTCCTATTCTTTATCACACACCATTTGAAGAAGAAATTAGCTCTCCAAATTGTTCCTGTCCGGTGAGTCCCCTTGAAGCGTTTTCTTTTTTTTCCTTCTTTCTTCTTATATTTTGAATTTCCTTTTATTGGAACTTCCTTCTCAATTTGTTATACTTCATTGTTTCATATGACGGTGGACTTCTTGTTTGATCTGTGCCTTATCCATTTGCCTCTTCAACCCAATTGATAGTCGGGTTCTAACGGGTACGTACATATGCCTCGGTCTTTTTAATATTTTTTTGTTTGCTAGTCATAATCTTTACTTAAATAATATATATATTTTTTTTTTGTCAGCGTAGGGTGAAAATTGACGGTTAACCAACCTACCCGTTCGACCGTCACTACATTACATGTAACTTATTTGTAATACCCTTTTCTGTTTTTTAAGTACATTAATCGTAGAACTTGATGTTTGGCAAATGTATATGGTATTTTGTTTGAAATGCTTATGTGTAATTCATGTGTCTAATTTATTCGGTTGCACTTTTGTTTAAACCATTTTGAAGAATTAATGTTCATTTTCTTACGTATTTCATTTTTAATCAATCAATTTGAATTGTATATTTTAGTTTATGACCTATGTTATACAATTTTCTTTTTACTTTATATAAAACACATCTTCCCAAGATTAAGTATGTGTATTCAATATGCCAAAAAACAAAAAAAAGTGAAGAATAACAAGCAATTTCTCAAAACCAAAAAAAAAAAAAAAAAAAAAAAGTAAAAAAGGTACCAATTCTAATCTTGAAGATTAATAGGAAAATAAATTTTTACTTTCAATTTATAATGTATAATTTATAATTAAAATCCAAAAGTATGATAAAAAATGGTACTTCAACTTAGATAATTTTTCCATGCGCTTGTTATAATTGAAAACATTGTATAATTTATAATTAAAATTCAAAAGTTTGCAAAAAAAAGTGGCAATTCAACTCAAATAATTCTTCAATGCGGTTTTATAATAGAAAACCAAGCTTTTGTACTTTGCAAAAAACGTTGGTACTTCAACTCAAATTTAATGAGGTTTTAAGAAAAAAAGTTGGTACTTCAACTCAAGTTCAATCCGGTTTTATAATTCAAAACAAACGTTTTCAACTTTGCAAAAATTTTAGATTGAACTCAAATTCATTGTGGTTTTATAAATAAACACCAATGTTTCTTATTTTTAAAAATGTTGGGACTTAAACAATTTTCCATATAATTTCCTATAAATAAAATGGATCATTTACTACATTACTAAAATCCAACATTTGATATTTCATGAAAATTGGTACAAAAATTGTTTGTAACTAACTACCATTAAGTCCTAATTTTAGAAAAATTTTATCAAGTAGTTTTGAAAATATAATTTATGAGAAATGGTAGTCANNNNNNNNNNNNNTCAACTATGGTTCTATATGATTAAGGGAATTGAAAATCTTTTCACAATTAAACTACATTTCAAATCTGAATTTAAATAACGTGTTCCAAACGAGATTATAATCGTTTGTTTGTTTACGGGTTTGTTTGTTTGTTTACGTGTTTGTTTGTTTATGTGTTGGGTTGTTTACTTATTGATCCGTTCATTTGTAATCAATATTTTTCTAAATAATAAATTGGGTGGGGTATAAGAAAAGATTGATTACATAGGAAGATCGAATAGATAGGACTTCAAATAGATAGGACTTCAAATAGATAGGAATACTTAAGTATGGCTGCTATCTTGTCAGGTCCATTGTTAGTTCAGTTAATCAATGGATGACATGGACATTCAACCTGACGAGCCAATTGCAATATTGGCGGTTGAATGTGCGGCTACCTTAGCAATGGTGAATACTATCACCACTTTGCTACAATTGGATGACAATCGGGAGCGACCGTCTCCACTTATTAGACATCAGATTCGACAGTTGAATTTCTTTCGTCTGATCTACAAAGATGATCAGACGTGTTGTGTGAACACTCGCATGGATAGGCGAACGTTCACGATTCTGTGTTAGTTACTTAGGACGACGGATGGGCTAAGGCCCACGAAATATGTAAATGTGGAGGAAATGGTGACTATCTTCCTGCACATAGTCGCACACGATGTAAAAAATCGAGTGATGCGACGCCAATTTGCAAGGTCTGGCGGATAGTTTCCAAGCACTTCAATATTGTGTTGAATGCAATATTGAGACTGTCGACGTTCTATTTCGAAAACCAGAGCTAGTCACTGAGAATTGTACAGATGAAAGATGGCACTGGTTTCAGGTACAACCATTCTGTTGTTTTAATGGTATTGTTTGGGGGTTTTGGAAATTACCTTAAACTTATCATTGAAACAAAGTTTCGTCACAGAATTGCTTAGGTGCACTTGATGAAACCCACATAAAGGTAAATGTCAGTGCAGCTTATTGACCACGCTATAGGACTAGAAAGGGCCAGATTGCAACGAATGTTCTTGCTGTATGCAATCAAAGCTGTGAGTTCATATTCGTTTTCCCTGGATGGGAAGGATTAGCTGCTGACTCAAGGGTTCTGCGAGATGCAGTGTCCAGGCAAATTGGATTGAAAGTCCCAAGGGGTTAGTTTATAGATATCGGTATACCCTTCCATATAAATGAAAAAGTACAACAAGTGATAACTTGACCCAATTTCGCAGGATACTACTATCTATGTGACGCCGGTTATCCAAACGCCGAGGAACTTTTGGCTCCTTATTGGGGACAAAGATACCATTTGACTGAGTGGTGTGGAGGGAACTCACCAACAAGCCCTAGGGAGCTTTTCAATATGAGACATTCATCTGCCCTGCATGTCATTGAGAGAGCGTTCGGGATGTTGAAAGGTCGATGGGCAATCCTCCAAGGAAAATCATACTACTTGGTTGATGTGCAGTGCAAGACCATATATGCATGTTGTCTCCTGCACAATTTAATAATTTGGGAAATGGGCCCAAATTTCTTAATCGATGAAGGAGAGGGAAGTCAGGGGGGACCAATTCCAACAGACACTAAGAATATTGAATTTGTGTAGACATCGATGCATTCACTGCTTGGAGGGATGATTTCGCAAATCAGATGTGGGCTGAATGGAATGCAAACTAGGGATGCCCTTGGAAAATTCTGTGTAGTCCTTTTTTTTACTTTTTTTTAATGTATAAAGTATTTTGTTGGTGTCTGACGTATAGTTTTTGTAATTTTTTGTGTATCATATGTGAATATTTTAATGTTATAGTATGAATGGATTGATTCCTGTTATATACACTTGCAATGGGTAAATTGCCTTGCTCCCCACAATCTTTTCGCTATGCTATAACCTGAATTTGTTAACAAGTTCAATTTTAGATGAAAGCATCCGGGTCATGTGTAAGAGCCGCAAAACATATTTGGACGGATGAGGAGGACAAAATCCTCGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCAAGCTGATAACGGGACTTTTCGACCTGGATTCCTATCAAACATATTACGGATGATGCAGCAGAGGATACTGGGGTGTTCCATACAGGTAAGCCCACATCTGGAGTCAAGGGTCAGGACCCTAAAGAGACAGTACGGTGCGATCGCTGAAATGTTGGGTCCAGGCTGTAGTGGGTTTGGTTGGAATGCGGAGCGCAAATGTATTGACTGTGAGGCGGAGATATTTGACGCGTGGGTCAAGGTAATTTCATTACTTGTTTTATTTATTTCTTCTTCTTTTAAATTTAACTTGACCATAACATAACACATTTCACCTTTAACAGAGTCATCCAAGTGCAAAAGGACTGCGCCATAAGTCATTTCCGTATTATGACGACTTGGTCATCGTATTCGGCAAAGACAGAACCACAAGGAATCATGCAACCACCACTACAGAGGTCAGATCTGAACCTGTTATGGAAGAGGAGAACGAGGACATCCTGAAGAACCAGTCCCCAGACTTTGAGAACTTCTATATTCTTGATCCACCTTTTGCCAGCTCGCCCACGTCAGACAACATTCCAACTACACCCAGCGGTAGAGGGTCTGGAAGTAGCTTGCCATCAAGGAGTAGGAGGTCCCAAATTTCCTTGATTGGAGAGTACAGCGAGGTGGTTCGTGAGGAATTCCAACTTCTGACGAAGTTCATTGACAGCATTGCACAGTGGTCTGTCATGAATAAGGACCTAGCAAGGCGTCGTCGTGGAGAACTATACGCCGAGCTACAATCCATTCCTGGTCTGTCGGTACAGGATGGCTTGACTATTGCACGGTCATTGCTTGCAGATCCAATGCTGTTAAGCCACTTTGTGGACTTCCCACTGCAGTAG

mRNA sequence

ATGCTTCAGAGCAGACGACATGGGACGTTGAAGCCCTCTCTTGCCGCTCTAACGGCGGAAATGGTGGCTCTTGCCGCCGTCGATTGCTTGGTAGGTGGTCCCCATGCGCCGGTTTTGGGCTTTGGTAGCGGAGGGCTCCTCCCAACTTACACGACTGTCGACGTTCTATTTCGAAAACCAGAGCTAGTCACTGAGAATTGTACAGATGAAAGATGGCACTGGTTTCAGAGTCATCCAAGTGCAAAAGGACTGCGCCATAAGTCATTTCCGTATTATGACGACTTGGTCATCGTATTCGGCAAAGACAGAACCACAAGGAATCATGCAACCACCACTACAGAGGTCAGATCTGAACCTGTTATGGAAGAGGAGAACGAGGACATCCTGAAGAACCAGTCCCCAGACTTTGAGAACTTCTATATTCTTGATCCACCTTTTGCCAGCTCGCCCACGTCAGACAACATTCCAACTACACCCAGCGGTAGAGGGTCTGGAAGTAGCTTGCCATCAAGGAGTAGGAGGTCCCAAATTTCCTTGATTGGAGAGTACAGCGAGGTGGTTCGTGAGGAATTCCAACTTCTGACGAAGTTCATTGACAGCATTGCACAGTGGTCTGTCATGAATAAGGACCTAGCAAGGCGTCGTCGTGGAGAACTATACGCCGAGCTACAATCCATTCCTGGTCTGTCGGTACAGGATGGCTTGACTATTGCACGGTCATTGCTTGCAGATCCAATGCTGTTAAGCCACTTTGTGGACTTCCCACTGCAGTAG

Coding sequence (CDS)

ATGCTTCAGAGCAGACGACATGGGACGTTGAAGCCCTCTCTTGCCGCTCTAACGGCGGAAATGGTGGCTCTTGCCGCCGTCGATTGCTTGGTAGGTGGTCCCCATGCGCCGGTTTTGGGCTTTGGTAGCGGAGGGCTCCTCCCAACTTACACGACTGTCGACGTTCTATTTCGAAAACCAGAGCTAGTCACTGAGAATTGTACAGATGAAAGATGGCACTGGTTTCAGAGTCATCCAAGTGCAAAAGGACTGCGCCATAAGTCATTTCCGTATTATGACGACTTGGTCATCGTATTCGGCAAAGACAGAACCACAAGGAATCATGCAACCACCACTACAGAGGTCAGATCTGAACCTGTTATGGAAGAGGAGAACGAGGACATCCTGAAGAACCAGTCCCCAGACTTTGAGAACTTCTATATTCTTGATCCACCTTTTGCCAGCTCGCCCACGTCAGACAACATTCCAACTACACCCAGCGGTAGAGGGTCTGGAAGTAGCTTGCCATCAAGGAGTAGGAGGTCCCAAATTTCCTTGATTGGAGAGTACAGCGAGGTGGTTCGTGAGGAATTCCAACTTCTGACGAAGTTCATTGACAGCATTGCACAGTGGTCTGTCATGAATAAGGACCTAGCAAGGCGTCGTCGTGGAGAACTATACGCCGAGCTACAATCCATTCCTGGTCTGTCGGTACAGGATGGCTTGACTATTGCACGGTCATTGCTTGCAGATCCAATGCTGTTAAGCCACTTTGTGGACTTCCCACTGCAGTAG

Protein sequence

MLQSRRHGTLKPSLAALTAEMVALAAVDCLVGGPHAPVLGFGSGGLLPTYTTVDVLFRKPELVTENCTDERWHWFQSHPSAKGLRHKSFPYYDDLVIVFGKDRTTRNHATTTTEVRSEPVMEEENEDILKNQSPDFENFYILDPPFASSPTSDNIPTTPSGRGSGSSLPSRSRRSQISLIGEYSEVVREEFQLLTKFIDSIAQWSVMNKDLARRRRGELYAELQSIPGLSVQDGLTIARSLLADPMLLSHFVDFPLQ
Homology
[Close]
BLAST of Cla010233 vs. TrEMBL
Match: A0A0A0M0S6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665930 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 59/184 (32.07%), Postives = 93/184 (50.54%), Query Frame = 1 

Query: 74  WFQSHPSAKGLRHKSFPYYDDLVIVFGKDRTTRNHATTTTEVRSEPVMEEENEDILKNQS 133
           W + H +A+GL +KSF Y+ DL IV G+DRT  +   T  E+  +   + E +DI  N  
Sbjct: 86  WVKEHHNARGLLNKSFSYFYDLQIVIGRDRTIGDRCKTPVEMDPQTTKDIEKDDIGIN-- 145

Query: 134 PDFENFYILDPPFASSPTSDNIPTTPSGR--GSGSSLPSRSRRSQISLIGEYSEVVREEF 193
              E+F I  P     P+  N+ +TP+     + S   SR RRS       +   +RE F
Sbjct: 146 --LEDFDIPKPHGLELPSVKNMSSTPTSMILDARSYRQSRKRRSYSC---TFCASMRETF 205

Query: 194 QLLTKFIDSIAQWSVMNKDLARRRRGELYAELQSIPGLSVQDGLTIARSLLADPMLLSHF 253
           + + K +    +   +   L +    +LY ELQ+I G+ V + L +  SLL +P +L  F
Sbjct: 206 KEIGKIVAMEERKMKIESSLHK----QLYVELQTIHGMDVDNCLIVVESLLPNPTMLHTF 258

Query: 254 VDFP 256
           +D+P
Sbjct: 266 LDYP 258

[Close]
BLAST of Cla010233 vs. TrEMBL
Match: A0A161WV79_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011368 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 57/195 (29.23%), Postives = 87/195 (44.62%), Query Frame = 1 

Query: 74  WFQSHPSAKGLRHKSFPYYDDLVIVFGKDRTTRNHATTTTEVRSEPVMEEENEDILKNQS 133
           W +SHP+AKGLR+KSFPYYD+L  VFGKDR       +  +   E   EEEN        
Sbjct: 51  WLKSHPNAKGLRNKSFPYYDELSQVFGKDRANGECVESPADAAEEIANEEEN-------- 110

Query: 134 PDFENFYILDPPFASSPTSDNIPTTPSGRGSGSSLPSRSRRSQISLIGEYSEVVREEFQL 193
                      P  S    +N     S R    S  + SR ++  L  +  E+V+E    
Sbjct: 111 ----------TPQQSEHRKENTEDEVSPRIDVQSADTNSRANK-RLKADSLEIVKE---- 170

Query: 194 LTKFIDSIAQ-WSVMNKDLAR------------RRRGELYAELQSIPGLSVQDGLTIARS 253
           LT  +  I+      N+++A+            ++RG + +EL  + GL+ ++ +   R 
Sbjct: 171 LTFGLQKISNVMETGNENIAKLTSCFQHESDGAKKRGLVNSELMKVAGLTAEEIIKAGRK 222

Query: 254 LLADPMLLSHFVDFP 256
           +  DP+   HF   P
Sbjct: 231 IALDPLETDHFFSLP 222

[Close]
BLAST of Cla010233 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 54/182 (29.67%), Postives = 93/182 (51.10%), Query Frame = 1 

Query: 77  SHPSAKGLRHKSFPYYDDLVIVFGKDRTTRNHATTTTEVRSE--PVMEEENEDILKNQSP 136
           SHP+AKGL +KSF +YD+L  VFGKDR T   A +  ++ S   P  +    D + +   
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPD--T 525

Query: 137 DFENFYILDPPFASSPTSDNIPTTPSGRGS-GSSLPSRSRRSQISLIGEYSEVVREEFQL 196
           DF   Y   P    SP  D++  T + R S   ++ S S+R +     +  ++VR   + 
Sbjct: 526 DFPPMY--SPGLNMSP--DDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEY 585

Query: 197 LTKFIDSIAQWSVMNKDLARRRRGELYAELQSIPGLSVQDGLTIARSLLADPMLLSHFVD 256
             + +  IA+W ++ +  A + R E+   L++IP L++ D   + R L+ +   +  F++
Sbjct: 586 GNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLE 641

[Close]
BLAST of Cla010233 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 35.0 bits (79), Expect = 1.6e+02
Identity = 13/32 (40.62%), Postives = 19/32 (59.38%), Query Frame = 1 

Query: 46  LLPTYTTVDVLFRKPELVTENCTDERWHWFQS 78
           LL      + L +KP+ V   CTD+RW WF++
Sbjct: 108 LLAVIRLHEELLKKPQPVPNECTDQRWRWFEN 139


HSP 2 Score: 73.9 bits (180), Expect = 3.1e-10
Identity = 60/202 (29.70%), Postives = 96/202 (47.52%), Query Frame = 1 

Query: 67  CTDERW-HWFQSHPSAKGLRHKSFPYYDDLVIVFGKDRTTRNHATTTTEVRSEPVMEEEN 126
           C    W  W +SH +A GLR+K FP+Y++L  ++GKDR   N + T  +V  E  ME+  
Sbjct: 110 CPQAVWDEWIKSHKNAAGLRNKPFPFYEELGKIWGKDRAIGNESGTVYDVLQE--MEDVT 169

Query: 127 EDILKNQSPDFENFYILDPPFASSPTSDNIPTTPSGRGSGSSLPSRSRRSQI-------- 186
               ++Q PD      L+   ++SPT  + P  PS     S+ PS SR  ++        
Sbjct: 170 RVGEEHQVPD------LNAEESNSPTQCD-PMGPSSSTPQSTTPSSSRTKRVRTETIEAL 229

Query: 187 ----SLIGEYSEVVREEFQLLTKFIDSIAQWSVMNKDLARRRRGELYAELQSIPGLSVQD 246
               + IG+ SEV+    +  T+ I  +A       D A RR  +L  E+  + GLS  +
Sbjct: 230 KEFSTKIGKISEVM----EAATEHIGRLANCFQHESDSADRRM-KLTTEIMKMEGLSPSE 289

Query: 247 GLTIARSLLADPMLLSHFVDFP 256
            L  ++ +  +P+ +  F   P
Sbjct: 290 VLLASKKIALNPLEVDFFFSLP 297

[Close]
BLAST of Cla010233 vs. TrEMBL
Match: A0A0J8BIR4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g018220 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.3e-10
Identity = 56/193 (29.02%), Postives = 88/193 (45.60%), Query Frame = 1 

Query: 67  CTDERW-HWFQSHPSAKGLRHKSFPYYDDLVIVFGKDRTTRNHATTTTEVRSEPVMEEEN 126
           C    W  W +SH +A GLR+K FP+Y++L  ++GKDR   N + T  +V  E  ME   
Sbjct: 110 CPQAVWDEWIKSHKNAAGLRNKPFPFYEELGKIWGKDRAVGNESGTVYDVLQE--MEHGA 169

Query: 127 EDILKNQSPDFENFYILDPPFASSPTSDNIPTTPSGRGSGSSLPSRSRRSQISLIGEYSE 186
               ++Q PD  N    + P    PT     +TP      SS   R+R   I  + E+S 
Sbjct: 170 RVEEEHQVPDL-NAEESNSPTQCDPTGPP-SSTPQSTTPSSSRTKRARTETIEALKEFST 229

Query: 187 ---VVREEFQLLTKFIDSIAQWSVMNKDLARRRRGELYAELQSIPGLSVQDGLTIARSLL 246
               + +  +  T+ I  +A       D A RR  +L  E+  + GLS  + L  ++ + 
Sbjct: 230 KIGKISDVMEAATEHIGRLANCFQHESDSADRRM-KLTTEIMKMEGLSPSEVLLASKKIA 289

Query: 247 ADPMLLSHFVDFP 256
            +P+ +  F   P
Sbjct: 290 LNPLEVDFFFSLP 297

[Close]
BLAST of Cla010233 vs. NCBI nr
Match: gi|659071532|ref|XP_008460440.1| (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 3.0e-22
Identity = 69/188 (36.70%), Postives = 103/188 (54.79%), Query Frame = 1 

Query: 74  WFQSHPSAKGLRHKSFPYYDDLVIVFGKDRTTRNHATTTTEVRSEPVMEEENEDILKNQS 133
           W + HP+A+GL +KSFPY+ DL I+FG+DR T     T  E+  +   + E +D+  N  
Sbjct: 27  WVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKTPIEMGLQIARDTEEDDMDIN-- 86

Query: 134 PDFENFYILDPPFASSPTSDNIPTTPSGRGS--GSSLPSRSRRSQISLIGEYSEVVREEF 193
              E+F I +P     P+ +++ +TP+      GSS PS+ RRS       YSE + + F
Sbjct: 87  --LEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRS-------YSEDLMDTF 146

Query: 194 QL----LTKFIDSIAQWSVMNKDLARRRRGELYAELQSIPGLSVQDGLTIARSLLADPML 253
           +      +K I  IA W     ++       LYAELQ+IPG+ V D L +  SLL DP++
Sbjct: 147 RASMRETSKEIRKIAAWQREKMEIESSIHKRLYAELQTIPGMDVDDCLIVVESLLPDPIM 203

Query: 254 LSHFVDFP 256
           L  F+D+P
Sbjct: 207 LHTFLDYP 203

[Close]
BLAST of Cla010233 vs. NCBI nr
Match: gi|700211636|gb|KGN66732.1| (hypothetical protein Csa_1G665930 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 3.3e-13
Identity = 59/184 (32.07%), Postives = 93/184 (50.54%), Query Frame = 1 

Query: 74  WFQSHPSAKGLRHKSFPYYDDLVIVFGKDRTTRNHATTTTEVRSEPVMEEENEDILKNQS 133
           W + H +A+GL +KSF Y+ DL IV G+DRT  +   T  E+  +   + E +DI  N  
Sbjct: 86  WVKEHHNARGLLNKSFSYFYDLQIVIGRDRTIGDRCKTPVEMDPQTTKDIEKDDIGIN-- 145

Query: 134 PDFENFYILDPPFASSPTSDNIPTTPSGR--GSGSSLPSRSRRSQISLIGEYSEVVREEF 193
              E+F I  P     P+  N+ +TP+     + S   SR RRS       +   +RE F
Sbjct: 146 --LEDFDIPKPHGLELPSVKNMSSTPTSMILDARSYRQSRKRRSYSC---TFCASMRETF 205

Query: 194 QLLTKFIDSIAQWSVMNKDLARRRRGELYAELQSIPGLSVQDGLTIARSLLADPMLLSHF 253
           + + K +    +   +   L +    +LY ELQ+I G+ V + L +  SLL +P +L  F
Sbjct: 206 KEIGKIVAMEERKMKIESSLHK----QLYVELQTIHGMDVDNCLIVVESLLPNPTMLHTF 258

Query: 254 VDFP 256
           +D+P
Sbjct: 266 LDYP 258

[Close]
BLAST of Cla010233 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 4.8e-12
Identity = 60/185 (32.43%), Postives = 87/185 (47.03%), Query Frame = 1 

Query: 74  WFQSHPSAKGLRHKSFPYYDDLVIVFGKDRTTRNHATTTTEVRSEPVMEEENEDILKNQS 133
           W +SHP+AKGL HKSFPYYDDL  VFGKDR T   + T   V S  V    N+ I    S
Sbjct: 111 WIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSN-VSNMFNDTIPLGDS 170

Query: 134 PDFENFYILDPPFASSPTSDNIPTTPSGRGS-GSSLPSRSRRSQISLIGEYSEVVREEFQ 193
            D +   +       SP  D +    +G+ S   +  S S+R + S   E  EV+R   +
Sbjct: 171 HDEDIPTMYSQGVHMSP--DEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVME 230

Query: 194 LLTKFIDSIAQWSVMNKDLARRRRGELYAELQSIPGLSVQDGLTIARSLLADPMLLSHFV 253
              + + +IA W    + +    R ++  +LQ IP L  QD   + + L      +  F+
Sbjct: 231 FGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFL 290

Query: 254 DFPLQ 258
             P +
Sbjct: 291 SIPTE 292

[Close]
BLAST of Cla010233 vs. NCBI nr
Match: gi|672172947|ref|XP_008806587.1| (PREDICTED: uncharacterized protein LOC103719223 [Phoenix dactylifera])

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 59/207 (28.50%), Postives = 96/207 (46.38%), Query Frame = 1 

Query: 61  ELVTENCTDERWHWFQ--SHPSAKGLRHKSFPYYDDLVIVFGKDRTTRNHATTTTEVRSE 120
           E++  NC+   W      SHP+A+G+R+K FP+++DL  +FG+DR T   A    +   E
Sbjct: 468 EMLGPNCSGFGWDDINKCSHPNAQGMRNKPFPHFEDLTNIFGRDRATGMGAEAPVDAVEE 527

Query: 121 PVMEEENEDILKNQSPDFENFYILDPPFASSPTSDNIPTTPSG-RGSGSSLPSRSRRSQI 180
             MEE+        SP        D  F     + N P T +    +G S P+R+++++ 
Sbjct: 528 IEMEEQQ---YPYTSPAINESQKADSNFVGQNVNMNTPQTATNTEVAGPSRPTRTKKAR- 587

Query: 181 SLIGEYSEVVREEFQLLTKFIDSIAQWSVMNKDLARR---------RRGELYAELQSIPG 240
               E  EVVR+    +TK +  +A      + LA+R         RR  +  E+  + G
Sbjct: 588 ---HEALEVVRDLTSEMTKVVGMMAAAGDHIEKLAQRFKHESETADRRMTVVYEVMKVQG 647

Query: 241 LSVQDGLTIARSLLADPMLLSHFVDFP 256
           LS  + L + R +  DP+   +F   P
Sbjct: 648 LSQSEILKVGRKIAMDPLETDYFFSLP 667

[Close]
BLAST of Cla010233 vs. NCBI nr
Match: gi|672172947|ref|XP_008806587.1| (PREDICTED: uncharacterized protein LOC103719223 [Phoenix dactylifera])

HSP 1 Score: 32.3 bits (72), Expect = 1.5e+03
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 1 

Query: 56  LFRKPELVTENCTDERWHWF 76
           L + PE VTE  TDE+W WF
Sbjct: 160 LLKNPEPVTERSTDEKWMWF 179


HSP 2 Score: 78.2 bits (191), Expect = 2.4e-11
Identity = 53/193 (27.46%), Postives = 95/193 (49.22%), Query Frame = 1 

Query: 67  CTDERW-HWFQSHPSAKGLRHKSFPYYDDLVIVFGKDRTTRNHATTTTEVRSEPVMEEEN 126
           C    W  W +SH +A GLR+K FP++D+L  +FGKDR   N +T   +V  E  M+EE 
Sbjct: 101 CPQTVWDEWIKSHKNAIGLRNKPFPFFDELGKIFGKDRAVGNESTNVHDVLEE--MDEEE 160

Query: 127 EDILKNQSPDFENFYILDPPFASSPTSDNIPTTPSGRGSGSSLPSRSRRSQISLIGEYS- 186
            +    + P + +   ++P   +SP      TTPS R +      ++R   I ++ E+S 
Sbjct: 161 REEEGQEVPQY-SLEEINPSSQNSPMGPPPSTTPSTRRT-----KKARTETIEVLKEFST 220

Query: 187 --EVVREEFQLLTKFIDSIAQWSVMNKDLARRRRGELYAELQSIPGLSVQDGLTIARSLL 246
             E + +  +  ++ I  +A       D A RR  ++  E+  + GL+  D + +++ + 
Sbjct: 221 KLEKISDVMEAASEHIGRLANCFQHESDSAERRM-KVTNEVMKMEGLTPTDVILVSKKIA 280

Query: 247 ADPMLLSHFVDFP 256
            +P+ +  F   P
Sbjct: 281 LNPLEVDFFFSLP 284

The following BLAST results are available for this feature:
BLAST of Cla010233 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0S6_CUCSA2.3e-1332.07Uncharacterized protein OS=Cucumis sativus GN=Csa_1G665930 PE=4 SV=1[more]
A0A161WV79_DAUCA1.1e-1029.23Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011368 PE=4 SV=1[more]
E5GCB5_CUCME1.4e-1029.67Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME1.6e+0240.63Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0J8BIR4_BETVU5.3e-1029.02Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g018220 PE=4 S... [more]
BLAST of Cla010233 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071532|ref|XP_008460440.1|3.0e-2236.70PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo][more]
gi|700211636|gb|KGN66732.1|3.3e-1332.07hypothetical protein Csa_1G665930 [Cucumis sativus][more]
gi|659082641|ref|XP_008441954.1|4.8e-1232.43PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|672172947|ref|XP_008806587.1|1.4e-1128.50PREDICTED: uncharacterized protein LOC103719223 [Phoenix dactylifera][more]
gi|672172947|ref|XP_008806587.1|1.5e+0360.00PREDICTED: uncharacterized protein LOC103719223 [Phoenix dactylifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla010233Cla010233.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla010233Cucurbita pepo (Zucchini)cpewmB273
Cla010233Bottle gourd (USVL1VR-Ls)lsiwmB043
Cla010233Melon (DHL92) v3.6.1medwmB083
Cla010233Melon (DHL92) v3.6.1medwmB084
Cla010233Silver-seed gourdcarwmB0794
Cla010233Watermelon (97103) v2wmwmbB042
Cla010233Wax gourdwgowmB353
Cla010233Cucurbita maxima (Rimu)cmawmB509
Cla010233Cucurbita moschata (Rifu)cmowmB502
Cla010233Watermelon (Charleston Gray)wcgwmB008
Cla010233Watermelon (Charleston Gray)wcgwmB011