Cla009982 (gene) Watermelon (97103) v1

Overview
NameCla009982
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCation transport regulator-like protein 1 (AHRD V1 ***- E2C8V6_HARSA); contains Interpro domain(s) IPR006840 ChaC-like protein
LocationChr5 : 33038951 .. 33039312 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTTTGGGTATTTGGTTATGGCTCACTGGTGTGGAATCCAGGATTTGAATTTGATGAGAAAATTATAGGCTATATCAAGGATTATAAGCGTGTTTTCGACCTCGGTAAGTTTCGTATTTCCAGCAAGAAAATTTTGTAGATGCAATTCCCTATAGTCAATAGTCATCCATTCAATTTTGATTGTTCATAATAAGAATTTATCTCATCTTTGGACCAGCATGCATTGATCACAGAGGTACTCCAGAAAATCCTGCAAGAACTCTTACCTTGGAACAGGAAGTAGGAGCTATTTGTGTAAGATTAACTACCGATCTAAATAAATTTGATATATTCTCAATGGATATTGGGTCATATTGA

mRNA sequence

ATGGTGTTTTGGGTATTTGGTTATGGCTCACTGGTGTGGAATCCAGGATTTGAATTTGATGAGAAAATTATAGGCTATATCAAGGATTATAAGCGTGTTTTCGACCTCGCATGCATTGATCACAGAGGTACTCCAGAAAATCCTGCAAGAACTCTTACCTTGGAACAGGAAGTAGGAGCTATTTGTGTAAGATTAACTACCGATCTAAATAAATTTGATATATTCTCAATGGATATTGGGTCATATTGA

Coding sequence (CDS)

ATGGTGTTTTGGGTATTTGGTTATGGCTCACTGGTGTGGAATCCAGGATTTGAATTTGATGAGAAAATTATAGGCTATATCAAGGATTATAAGCGTGTTTTCGACCTCGCATGCATTGATCACAGAGGTACTCCAGAAAATCCTGCAAGAACTCTTACCTTGGAACAGGAAGTAGGAGCTATTTGTGTAAGATTAACTACCGATCTAAATAAATTTGATATATTCTCAATGGATATTGGGTCATATTGA

Protein sequence

MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVGAICVRLTTDLNKFDIFSMDIGSY
Homology
[Close]
BLAST of Cla009982 vs. Swiss-Prot
Match: GCT21_ARATH (Gamma-glutamylcyclotransferase 2-1 OS=Arabidopsis thaliana GN=GGCT2;1 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.4e-28
Identity = 54/62 (87.10%), Postives = 56/62 (90.32%), Query Frame = 1 

Query: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVGA 60
          MV WVFGYGSL+WNPGF+FDEK+IGYIKDYKRVFDLACIDHRGTPE+PART TLEQ  GA
Sbjct: 1  MVLWVFGYGSLIWNPGFDFDEKLIGYIKDYKRVFDLACIDHRGTPEHPARTCTLEQSTGA 60

Query: 61 IC 63
          IC
Sbjct: 61 IC 62

[Close]
BLAST of Cla009982 vs. Swiss-Prot
Match: GCT22_ARATH (Gamma-glutamylcyclotransferase 2-2 OS=Arabidopsis thaliana GN=GGCT2;2 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-24
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 1 

Query: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVGA 60
          MV WVFGYGSLVWNPGF +DEK++G+IK YKRVFDLACIDHRGTPE+PART TLE+   A
Sbjct: 1  MVMWVFGYGSLVWNPGFHYDEKVLGFIKGYKRVFDLACIDHRGTPEHPARTCTLEKAEEA 60

Query: 61 IC 63
          IC
Sbjct: 61 IC 62

[Close]
BLAST of Cla009982 vs. Swiss-Prot
Match: GCT23_ARATH (Gamma-glutamylcyclotransferase 2-3 OS=Arabidopsis thaliana GN=GGCT2;3 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.9e-15
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 1 

Query: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVGA 60
          M  WVFGYGSL+W  GF FDE + G+IK Y+RVF     DHRGTP+ P RT+TLE     
Sbjct: 1  MAMWVFGYGSLIWKTGFPFDESLPGFIKGYRRVFHQGSTDHRGTPDFPGRTVTLEAAHEE 60

Query: 61 ICVRLTTDLNK 72
          +C  +   + K
Sbjct: 61 VCCGVAYKITK 71

[Close]
BLAST of Cla009982 vs. Swiss-Prot
Match: CHAC2_MOUSE (Putative glutathione-specific gamma-glutamylcyclotransferase 2 OS=Mus musculus GN=Chac2 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-10
Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 1 

Query: 4  WVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVG 60
          WVFGYGSL+W   F + +K++GYI +Y R F     DHRG P  P R +TL ++ G
Sbjct: 2  WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPG 57

[Close]
BLAST of Cla009982 vs. Swiss-Prot
Match: CHAC2_RAT (Putative glutathione-specific gamma-glutamylcyclotransferase 2 OS=Rattus norvegicus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-10
Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 1 

Query: 4  WVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVG 60
          WVFGYGSL+W   F + +K++GYI +Y R F     DHRG P  P R +TL ++ G
Sbjct: 2  WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPG 57

[Close]
BLAST of Cla009982 vs. TrEMBL
Match: A0A0A0LJH3_CUCSA (Glutathione-specific gamma-glutamylcyclotransferase OS=Cucumis sativus GN=Csa_3G882970 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.7e-29
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 1 

Query: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVGA 60
          MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQE GA
Sbjct: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEEGA 60

Query: 61 IC 63
          IC
Sbjct: 61 IC 62

[Close]
BLAST of Cla009982 vs. TrEMBL
Match: R0GXB8_9BRAS (Glutathione-specific gamma-glutamylcyclotransferase OS=Capsella rubella GN=CARUB_v10001928mg PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.7e-26
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVGA 60
          MV WVFGYGSL+WNPGF+FDEK+IGYIKDYKRVFDLACIDHRGTPE+PART TLEQ +GA
Sbjct: 1  MVLWVFGYGSLIWNPGFDFDEKLIGYIKDYKRVFDLACIDHRGTPEHPARTCTLEQSIGA 60

Query: 61 IC 63
          IC
Sbjct: 61 IC 62

[Close]
BLAST of Cla009982 vs. TrEMBL
Match: D7M4Q6_ARALL (Glutathione-specific gamma-glutamylcyclotransferase OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_910696 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-26
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 1 

Query: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVGA 60
          MV WVFGYGSL+WNPGF+FDEKIIGYIKDYKRVFDLACIDHRGTPE+PART TLEQ  GA
Sbjct: 1  MVLWVFGYGSLIWNPGFDFDEKIIGYIKDYKRVFDLACIDHRGTPEHPARTCTLEQSTGA 60

Query: 61 IC 63
          IC
Sbjct: 61 IC 62

[Close]
BLAST of Cla009982 vs. TrEMBL
Match: K4CIA4_SOLLC (Glutathione-specific gamma-glutamylcyclotransferase OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.9e-26
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVGA 60
          MVFW+FGYGSLVWNPGFE+DEK+IGYIKDYKRVFDLACIDHRGTPE+PART TLE+  GA
Sbjct: 1  MVFWIFGYGSLVWNPGFEYDEKLIGYIKDYKRVFDLACIDHRGTPEHPARTCTLEESKGA 60

Query: 61 IC 63
          IC
Sbjct: 61 IC 62

[Close]
BLAST of Cla009982 vs. TrEMBL
Match: Q3HRX2_SOLTU (Glutathione-specific gamma-glutamylcyclotransferase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.7e-26
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVGA 60
          MVFW+FGYGSLVWNPGFE+DEK+IGYIKDYKRVFDLACIDHRGTPE+PART TLE+  GA
Sbjct: 1  MVFWIFGYGSLVWNPGFEYDEKMIGYIKDYKRVFDLACIDHRGTPEHPARTCTLEESEGA 60

Query: 61 IC 63
          IC
Sbjct: 61 IC 62

[Close]
BLAST of Cla009982 vs. NCBI nr
Match: gi|778687275|ref|XP_011652541.1| (PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 6.8e-29
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 1 

Query: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVGA 60
          MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQE GA
Sbjct: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEEGA 60

Query: 61 IC 63
          IC
Sbjct: 61 IC 62

[Close]
BLAST of Cla009982 vs. NCBI nr
Match: gi|659132587|ref|XP_008466278.1| (PREDICTED: cation transport regulator-like protein 2 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 6.8e-29
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 1 

Query: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVGA 60
          MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQE GA
Sbjct: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEEGA 60

Query: 61 IC 63
          IC
Sbjct: 61 IC 62

[Close]
BLAST of Cla009982 vs. NCBI nr
Match: gi|1012260024|ref|XP_015945847.1| (PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Arachis duranensis])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVGA 60
          MVFWVFGYGSLVWNPGFEFDEKIIGYIKDY+RVFDLACIDHRGTPE+PART TLE++ GA
Sbjct: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYRRVFDLACIDHRGTPESPARTCTLEEKEGA 60

Query: 61 IC 63
          IC
Sbjct: 61 IC 62

[Close]
BLAST of Cla009982 vs. NCBI nr
Match: gi|1021582294|ref|XP_016180538.1| (PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Arachis ipaensis])

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 56/62 (90.32%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVGA 60
          MVFWVFGYGSLVWNPGFEFDEKIIGYIKDY+RVFDLACIDHRGTPE+PART TLE++ GA
Sbjct: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYRRVFDLACIDHRGTPESPARTCTLEEKEGA 60

Query: 61 IC 63
          IC
Sbjct: 61 IC 62

[Close]
BLAST of Cla009982 vs. NCBI nr
Match: gi|727646165|ref|XP_010493882.1| (PREDICTED: cation transport regulator-like protein 2 [Camelina sativa])

HSP 1 Score: 126.3 bits (316), Expect = 2.4e-26
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 1 

Query: 1  MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEVGA 60
          MV WVFGYGSL+WNPGF+FDEK+IGYIKDYKRVFDLACIDHRGTPE+PART TLEQ +GA
Sbjct: 1  MVLWVFGYGSLIWNPGFDFDEKLIGYIKDYKRVFDLACIDHRGTPEHPARTCTLEQSIGA 60

Query: 61 IC 63
          IC
Sbjct: 61 IC 62

The following BLAST results are available for this feature:
BLAST of Cla009982 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GCT21_ARATH3.4e-2887.10Gamma-glutamylcyclotransferase 2-1 OS=Arabidopsis thaliana GN=GGCT2;1 PE=1 SV=1[more]
GCT22_ARATH1.3e-2479.03Gamma-glutamylcyclotransferase 2-2 OS=Arabidopsis thaliana GN=GGCT2;2 PE=1 SV=1[more]
GCT23_ARATH1.9e-1550.70Gamma-glutamylcyclotransferase 2-3 OS=Arabidopsis thaliana GN=GGCT2;3 PE=1 SV=1[more]
CHAC2_MOUSE1.4e-1048.21Putative glutathione-specific gamma-glutamylcyclotransferase 2 OS=Mus musculus G... [more]
CHAC2_RAT1.4e-1048.21Putative glutathione-specific gamma-glutamylcyclotransferase 2 OS=Rattus norvegi... [more]
BLAST of Cla009982 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJH3_CUCSA4.7e-2998.39Glutathione-specific gamma-glutamylcyclotransferase OS=Cucumis sativus GN=Csa_3G... [more]
R0GXB8_9BRAS1.7e-2687.10Glutathione-specific gamma-glutamylcyclotransferase OS=Capsella rubella GN=CARUB... [more]
D7M4Q6_ARALL2.2e-2688.71Glutathione-specific gamma-glutamylcyclotransferase OS=Arabidopsis lyrata subsp.... [more]
K4CIA4_SOLLC2.9e-2687.10Glutathione-specific gamma-glutamylcyclotransferase OS=Solanum lycopersicum PE=3... [more]
Q3HRX2_SOLTU3.7e-2687.10Glutathione-specific gamma-glutamylcyclotransferase OS=Solanum tuberosum PE=2 SV... [more]
BLAST of Cla009982 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778687275|ref|XP_011652541.1|6.8e-2998.39PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Cucum... [more]
gi|659132587|ref|XP_008466278.1|6.8e-2998.39PREDICTED: cation transport regulator-like protein 2 [Cucumis melo][more]
gi|1012260024|ref|XP_015945847.1|1.4e-2690.32PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Arach... [more]
gi|1021582294|ref|XP_016180538.1|1.4e-2690.32PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Arach... [more]
gi|727646165|ref|XP_010493882.1|2.4e-2687.10PREDICTED: cation transport regulator-like protein 2 [Camelina sativa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006840ChaC
IPR013024GGCT-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU39899watermelon EST collection version 2.0transcribed_cluster
WMU42415watermelon EST collection version 2.0transcribed_cluster
WMU69632watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009982Cla009982.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU39899WMU39899transcribed_cluster
WMU69632WMU69632transcribed_cluster
WMU42415WMU42415transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006840ChaC-like proteinPANTHERPTHR12192CATION TRANSPORT PROTEIN CHAC-RELATEDcoord: 1..62
score: 3.1
IPR006840ChaC-like proteinPFAMPF04752ChaCcoord: 3..62
score: 4.6
IPR013024Butirosin biosynthesis, BtrG-likeGENE3DG3DSA:3.10.490.10coord: 3..46
score: 8.
NoneNo IPR availablePANTHERPTHR12192:SF10SUBFAMILY NOT NAMEDcoord: 1..62
score: 3.1