Cla009840 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009840
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Germin-like protein 4 (AHRD V1 ***- A8QK90_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold
Location	Chr1 : 33405536 .. 33406797 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCTCAACTCTTCCTTCTAGCACTTTTTGTTGCTACTTCTTCTCTTGTTGTTATTGCATCTGATCCAAGTTCTCTTCAAGATTTTTGTGTGGCAGGTCTCAATAGTACAGGTATAAATATTTATAAATCGATGACTCCGAAAGAGTTAGATTAAAGGATGAATTGTTGTAAATTTATTTCCTTTTATTTGTATTCTTTAACTCTTTTCTCTTATCTATTGACTTAAAACTTGAGTTTCATTTGATAGCTATTTAATTTTATTTTTGAAAGTTAAGCGTAAAAATATTACTCCCATCACCTACATGTTTATTTGTTTAATTTGTTATGCATTCTCTACTATGTTTTCAAAAAATAAGCAAATAAATTTTGAAAACAAAAAATAGTTTTTTTCCTAAATTTAATTTTGATTTTGGAATTTGATTAAAAATACAAATGTGTCTTTAGGAATTATGAAACTCGTGATAAAAGAAAAATTGGGAAGAGAATATAAATTTAGGAAACAAAAAACTTGAAATGGAATTGTCATGGAATGAAGTGCTAACAAATCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTTAAACTTCTTCAGAAACCTAGCAAATCACCTAACAATGAATAATACTCATATATTCTTAATCTAATTTCTTAATATATGTACTATGTAGGTTAATGAGCTAGATGTATAAGTTGTTATTTGTAATGATTTTGCAGTGAAAGTAAATGGAGTGGTGTGCAAAAGTAATGTGACCGCGGATGATTTCTTCTTTAGTGGGCTCGACAAGGCAGGCAACACATCGAATCCAGTTGGATCTAAAGTAACTGCAGTGAATGTAGTTCAAATCCCTGGGCTCAACACTCTGGGCATCTCTTTGGCTCGTGTGGACTACGCTCCGTGGGGTATCAACCCACCCCACACACACCCACGCGCCACCGAGATCTTGACAGTCCTCGAAGGCACCCTCTTAGTTGGCTTCGTCACCTCTAATACGGAGAATCGTCTATTCACTAAAGTACTTTACAAGGGAGACGTGTTTGTGTTTCCCGTTGGACTCATTCACTTCCAACAAAACATCGGCTATGTACCTGCCGTGGCTTTGGCCGCACTTAGCAGTCAGAATCCCGGCGTCATCACCATTGGAAATGCAGTGTTTGGGTCTACCCCAGATATTCCAGCCAACATTCTGGCCAAAGCTTTCCAAATCGAGGAGGCCACCATTACCAAGATTCAGTCCAAGTTCTAA

mRNA sequence

ATGGCTTCTTCTCAACTCTTCCTTCTAGCACTTTTTGTTGCTACTTCTTCTCTTGTTGTTATTGCATCTGATCCAAGTTCTCTTCAAGATTTTTGTGTGGCAGGTCTCAATAGTACAGTGAAAGTAAATGGAGTGGTGTGCAAAAGTAATGTGACCGCGGATGATTTCTTCTTTAGTGGGCTCGACAAGGCAGGCAACACATCGAATCCAGTTGGATCTAAAGTAACTGCAGTGAATGTAGTTCAAATCCCTGGGCTCAACACTCTGGGCATCTCTTTGGCTCGTGTGGACTACGCTCCGTGGGGTATCAACCCACCCCACACACACCCACGCGCCACCGAGATCTTGACAGTCCTCGAAGGCACCCTCTTAGTTGGCTTCGTCACCTCTAATACGGAGAATCGTCTATTCACTAAAGTACTTTACAAGGGAGACGTGTTTGTGTTTCCCGTTGGACTCATTCACTTCCAACAAAACATCGGCTATGTACCTGCCGTGGCTTTGGCCGCACTTAGCAGTCAGAATCCCGGCGTCATCACCATTGGAAATGCAGTGTTTGGGTCTACCCCAGATATTCCAGCCAACATTCTGGCCAAAGCTTTCCAAATCGAGGAGGCCACCATTACCAAGATTCAGTCCAAGTTCTAA

Coding sequence (CDS)

ATGGCTTCTTCTCAACTCTTCCTTCTAGCACTTTTTGTTGCTACTTCTTCTCTTGTTGTTATTGCATCTGATCCAAGTTCTCTTCAAGATTTTTGTGTGGCAGGTCTCAATAGTACAGTGAAAGTAAATGGAGTGGTGTGCAAAAGTAATGTGACCGCGGATGATTTCTTCTTTAGTGGGCTCGACAAGGCAGGCAACACATCGAATCCAGTTGGATCTAAAGTAACTGCAGTGAATGTAGTTCAAATCCCTGGGCTCAACACTCTGGGCATCTCTTTGGCTCGTGTGGACTACGCTCCGTGGGGTATCAACCCACCCCACACACACCCACGCGCCACCGAGATCTTGACAGTCCTCGAAGGCACCCTCTTAGTTGGCTTCGTCACCTCTAATACGGAGAATCGTCTATTCACTAAAGTACTTTACAAGGGAGACGTGTTTGTGTTTCCCGTTGGACTCATTCACTTCCAACAAAACATCGGCTATGTACCTGCCGTGGCTTTGGCCGCACTTAGCAGTCAGAATCCCGGCGTCATCACCATTGGAAATGCAGTGTTTGGGTCTACCCCAGATATTCCAGCCAACATTCTGGCCAAAGCTTTCCAAATCGAGGAGGCCACCATTACCAAGATTCAGTCCAAGTTCTAA

Protein sequence

MASSQLFLLALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCKSNVTADDFFFSGLDKAGNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEILTVLEGTLLVGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIGYVPAVALAALSSQNPGVITIGNAVFGSTPDIPANILAKAFQIEEATITKIQSKF

Homology

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BLAST of Cla009840 vs. Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 7.4e-75
Identity = 151/217 (69.59%), Postives = 167/217 (76.96%), Query Frame = 1


Query: 1   MASSQLFLLALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCK--SNVTADDFFF 60
           MAS+  FLLAL +A S     ASDPS LQDFCVA   S V VNG  CK  + +T +DFFF
Sbjct: 1   MASTWFFLLAL-LAVSISNAFASDPSQLQDFCVADKMSQVLVNGFACKDPAAITVEDFFF 60

Query: 61  SGLDKAGNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEILTV 120
           SGL  AGNTSN  GS VT VNV QI GLNTLGISLARVDYAP+G+NPPH HPRATEILT+
Sbjct: 61  SGLHMAGNTSNRQGSAVTGVNVAQISGLNTLGISLARVDYAPYGLNPPHIHPRATEILTI 120

Query: 121 LEGTLLVGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIGYVPAVALAALSSQNPGV 180
           LEG+L VGFVTSN EN+LFTKVL KGDVFVFP GLIHFQ N G    +ALAALSSQNPGV
Sbjct: 121 LEGSLYVGFVTSNPENKLFTKVLNKGDVFVFPQGLIHFQFNYGTKDVIALAALSSQNPGV 180

Query: 181 ITIGNAVFGSTPDIPANILAKAFQIEEATITKIQSKF 216
           ITI NAVFGS P I  +ILAKAFQ+E+  + +IQ++F
Sbjct: 181 ITIANAVFGSKPFISDDILAKAFQVEKKIVDRIQAQF 216

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BLAST of Cla009840 vs. Swiss-Prot
Match: GL23_ORYSJ (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 9.6e-75
Identity = 142/198 (71.72%), Postives = 161/198 (81.31%), Query Frame = 1


Query: 20  VIASDPSSLQDFCVAGLNSTVKVNGVVCKS--NVTADDFFFSGLDKAGNTSNPVGSKVTA 79
           V+ASDPS LQD CVA   STV+VNGV CK   +V A+DFFFSGL  AGNT+N  GS VTA
Sbjct: 26  VVASDPSHLQDLCVADKASTVRVNGVACKDGEDVAAEDFFFSGLHMAGNTTNKQGSAVTA 85

Query: 80  VNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEILTVLEGTLLVGFVTSNTENRLF 139
           VNV Q+PGLNTLGISLAR+DYA  G+NPPHTHPRATEILTVLEG+L VGFVTSN EN+LF
Sbjct: 86  VNVAQVPGLNTLGISLARIDYALHGLNPPHTHPRATEILTVLEGSLYVGFVTSNPENKLF 145

Query: 140 TKVLYKGDVFVFPVGLIHFQQNIGYVPAVALAALSSQNPGVITIGNAVFGSTPDIPANIL 199
           TKV+ KGDVFVFP GL+HFQ N G   AVA+ ALSSQNPGVIT+ NAVFGS P I  +IL
Sbjct: 146 TKVINKGDVFVFPKGLVHFQFNYGTTDAVAIVALSSQNPGVITVANAVFGSKPSITDDIL 205

Query: 200 AKAFQIEEATITKIQSKF 216
           AKAFQ+E+  + +IQ+KF
Sbjct: 206 AKAFQVEKTVVDQIQAKF 223

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BLAST of Cla009840 vs. Swiss-Prot
Match: GL22_ORYSJ (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 7.6e-72
Identity = 143/213 (67.14%), Postives = 161/213 (75.59%), Query Frame = 1


Query: 5   QLFLLALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCKS--NVTADDFFFSGLD 64
           QL ++AL     S   IASDP  LQDFCV    S V+VNG  CK   +V A DFFFSGL 
Sbjct: 11  QLAVVALLALWCSHGAIASDPGLLQDFCVVDKMSQVRVNGFPCKDAKDVVAGDFFFSGLH 70

Query: 65  KAGNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEILTVLEGT 124
            AGNT+N  GS VT VNV QIPGLNT+G+SL R+DYAP G+NPPHTHPRATEI TVLEG+
Sbjct: 71  MAGNTTNKQGSNVTTVNVAQIPGLNTMGVSLVRIDYAPNGLNPPHTHPRATEIPTVLEGS 130

Query: 125 LLVGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIGYVPAVALAALSSQNPGVITIG 184
           L VGFV SN EN+LFTKVL KGDVFVFP GL+HFQ N G   AVALAALSSQNPGVIT+G
Sbjct: 131 LYVGFVISNPENKLFTKVLNKGDVFVFPQGLVHFQFNNGTNNAVALAALSSQNPGVITVG 190

Query: 185 NAVFGSTPDIPANILAKAFQIEEATITKIQSKF 216
           NAVFGS P I  +ILAKAFQ+++  I +IQ++F
Sbjct: 191 NAVFGSKPSISDDILAKAFQVDKNIIDRIQAQF 223

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BLAST of Cla009840 vs. Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 3.8e-71
Identity = 146/221 (66.06%), Postives = 170/221 (76.92%), Query Frame = 1


Query: 1   MASSQL--FLLALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCKS--NVTADDF 60
           MASS     L+A  +  +S   IASDPS LQDFCVA LNS V+VNG VCK+  N +ADDF
Sbjct: 1   MASSSFSFLLVAALLGLASWKAIASDPSPLQDFCVADLNSPVRVNGFVCKNPMNASADDF 60

Query: 61  FFSG-LDKAGNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEI 120
           F +  LDK  +T+N VGS VT VNV+Q+PGLNTLGIS+AR+D+AP G+NPPHTHPRATEI
Sbjct: 61  FKAAMLDKPRDTNNKVGSNVTLVNVLQLPGLNTLGISIARLDFAPLGLNPPHTHPRATEI 120

Query: 121 LTVLEGTLLVGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIG-YVPAVALAALSSQ 180
            TVLEGTL VGFVTSN +NRL +KVL KGDVFVFP GLIHFQ N   + PAVA+AALSSQ
Sbjct: 121 FTVLEGTLYVGFVTSNPDNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQ 180

Query: 181 NPGVITIGNAVFGSTPDIPANILAKAFQIEEATITKIQSKF 216
           NPGVITI NAVFGS P I  +IL KAFQ+++  I  +Q++F
Sbjct: 181 NPGVITIANAVFGSNPPISDDILMKAFQVDKKIIDLLQAQF 221

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BLAST of Cla009840 vs. Swiss-Prot
Match: GL811_ORYSJ (Germin-like protein 8-11 OS=Oryza sativa subsp. japonica GN=Os08g0190100 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.4e-70
Identity = 142/218 (65.14%), Postives = 165/218 (75.69%), Query Frame = 1


Query: 1   MASSQLFLLALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCKS--NVTADDFFF 60
           MASS   LLA  +A +S   +ASDPS LQDFCVA ++S V VNG  C +  +V AD FF 
Sbjct: 1   MASSSFLLLATLLAMASWQGMASDPSPLQDFCVADMHSPVLVNGFACLNPKDVNADHFFK 60

Query: 61  SGLDKAGNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEILTV 120
           + +      +N VGS VT +NV+QIPGLNTLGIS+AR+DYAP G NPPHTHPRATEILTV
Sbjct: 61  AAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTV 120

Query: 121 LEGTLLVGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIG-YVPAVALAALSSQNPG 180
           LEGTL VGFVTSN +N+ F+KVL KGDVFVFPVGLIHFQ N   Y PAVA+AALSSQNPG
Sbjct: 121 LEGTLYVGFVTSNPDNKFFSKVLNKGDVFVFPVGLIHFQFNPNPYKPAVAIAALSSQNPG 180

Query: 181 VITIGNAVFGSTPDIPANILAKAFQIEEATITKIQSKF 216
            ITI NAVFGS P I  ++LAKAFQ+E+ TI  +Q++F
Sbjct: 181 AITIANAVFGSKPPISDDVLAKAFQVEKGTIDWLQAQF 218

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BLAST of Cla009840 vs. TrEMBL
Match: A0A0A0KP70_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525610 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.8e-96
Identity = 189/219 (86.30%), Postives = 197/219 (89.95%), Query Frame = 1


Query: 1   MASSQLFLL--ALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCKSN--VTADDF 60
           MASSQL +L  A+FVATSSLV  ASDPS LQDFCVA  N TVKVNGVVCK    VT +DF
Sbjct: 1   MASSQLIILILAVFVATSSLV-FASDPSPLQDFCVADPNCTVKVNGVVCKDPKAVTVEDF 60

Query: 61  FFSGLDKAGNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEIL 120
           FF+GLDKAGNTSN VGSKVTA NV QIPGLNTLGISLAR+DYAPWGINPPHTHPRA+EIL
Sbjct: 61  FFTGLDKAGNTSNAVGSKVTAANVAQIPGLNTLGISLARIDYAPWGINPPHTHPRASEIL 120

Query: 121 TVLEGTLLVGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIGYVPAVALAALSSQNP 180
           TVLEGTLLVGFVTSNTENRLFTKVLYKGD FVFPVGLIHFQQNIGY PAVALAALSSQNP
Sbjct: 121 TVLEGTLLVGFVTSNTENRLFTKVLYKGDAFVFPVGLIHFQQNIGYGPAVALAALSSQNP 180

Query: 181 GVITIGNAVFGSTPDIPANILAKAFQIEEATITKIQSKF 216
           GVITI NAVFGS PDIPANILAKAFQ++ ATITKIQSKF
Sbjct: 181 GVITIANAVFGSNPDIPANILAKAFQVDVATITKIQSKF 218

[Close]

BLAST of Cla009840 vs. TrEMBL
Match: A0A0A0KIA8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525550 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.8e-86
Identity = 166/215 (77.21%), Postives = 183/215 (85.12%), Query Frame = 1


Query: 3   SSQLFLLALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCKSN--VTADDFFFSG 62
           +S+  +    + T ++ V ASDPS LQDFCVA   +TVKVNGVVCK +  VTADDFFFSG
Sbjct: 2   ASKAIIFGFLIVTYAVAVFASDPSHLQDFCVADPTNTVKVNGVVCKESEVVTADDFFFSG 61

Query: 63  LDKAGNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEILTVLE 122
           L K GNTSNPVGSKVT VNVVQIPGLNTLGISLAR+DYAP GINPPHTHPRATEILTVLE
Sbjct: 62  LHKVGNTSNPVGSKVTPVNVVQIPGLNTLGISLARIDYAPLGINPPHTHPRATEILTVLE 121

Query: 123 GTLLVGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIGYVPAVALAALSSQNPGVIT 182
           GTL VGFVTSNTENRLFTKVL KGDVFVFPVGL+HFQ NIG+ PAVALAALSSQNPGVIT
Sbjct: 122 GTLHVGFVTSNTENRLFTKVLQKGDVFVFPVGLVHFQHNIGHGPAVALAALSSQNPGVIT 181

Query: 183 IGNAVFGSTPDIPANILAKAFQIEEATITKIQSKF 216
           IGNAVFGS PDI  +IL+KAFQ +++ I  IQ+KF
Sbjct: 182 IGNAVFGSKPDISTDILSKAFQTDKSIIAGIQAKF 216

[Close]

BLAST of Cla009840 vs. TrEMBL
Match: A0A0A0KIB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525600 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.9e-82
Identity = 163/215 (75.81%), Postives = 178/215 (82.79%), Query Frame = 1


Query: 3   SSQLFLLALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCK--SNVTADDFFFSG 62
           +SQL   A F+  S  +  ASDPS LQDFCVA  NS VKVNG+VCK  S V A DFFFSG
Sbjct: 2   ASQLLFSAFFLLISFSISFASDPSPLQDFCVADPNSPVKVNGLVCKNPSLVEAKDFFFSG 61

Query: 63  LDKAGNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEILTVLE 122
           L  A +T+ P GS+VT VNVVQIPGLNTLGISLAR+DYAPWGIN PHTHPRATEILTVLE
Sbjct: 62  LHVAKDTNTPTGSQVTPVNVVQIPGLNTLGISLARIDYAPWGINAPHTHPRATEILTVLE 121

Query: 123 GTLLVGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIGYVPAVALAALSSQNPGVIT 182
           G LLVGF+TSN ENRL TK L+KGDVFVFPVGLIHFQQNIG+  AVA+AALSSQNPGVIT
Sbjct: 122 GKLLVGFITSNPENRLITKTLHKGDVFVFPVGLIHFQQNIGHHRAVAIAALSSQNPGVIT 181

Query: 183 IGNAVFGSTPDIPANILAKAFQIEEATITKIQSKF 216
           I NAVFGS PDIP +ILAKAFQ + ATITKIQ+KF
Sbjct: 182 IANAVFGSKPDIPTDILAKAFQTDPATITKIQAKF 216

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BLAST of Cla009840 vs. TrEMBL
Match: M5WIS3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017161mg PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.2e-79
Identity = 157/215 (73.02%), Postives = 178/215 (82.79%), Query Frame = 1


Query: 3   SSQLFLLALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCKSN--VTADDFFFSG 62
           +S+  LLAL   TSS +  ASDPSSLQDFCVA   ++V VNG+VCK      A+DFFFSG
Sbjct: 2   ASKFLLLALLAITSS-IAFASDPSSLQDFCVADAMNSVLVNGLVCKDPKLAEANDFFFSG 61

Query: 63  LDKAGNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEILTVLE 122
           L  AGNTSN VGS+VT VNV QI GLN LGIS+AR+DYAPWGINPPHTHPRA+EILTVLE
Sbjct: 62  LHLAGNTSNAVGSRVTPVNVAQIAGLNALGISIARIDYAPWGINPPHTHPRASEILTVLE 121

Query: 123 GTLLVGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIGYVPAVALAALSSQNPGVIT 182
           G+L VGFVTSN ENRL +KVL KGDVFVFPVGL+HFQQN+GY  AVA+AALSSQNPGVIT
Sbjct: 122 GSLKVGFVTSNPENRLISKVLEKGDVFVFPVGLVHFQQNVGYGNAVAIAALSSQNPGVIT 181

Query: 183 IGNAVFGSTPDIPANILAKAFQIEEATITKIQSKF 216
           I NAVFGS PDI A+ILAKAFQ+E+ T+  +QSKF
Sbjct: 182 IANAVFGSKPDISADILAKAFQVEKNTVYNLQSKF 215

[Close]

BLAST of Cla009840 vs. TrEMBL
Match: M5X6A4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026076mg PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.0e-79
Identity = 151/211 (71.56%), Postives = 174/211 (82.46%), Query Frame = 1


Query: 7   FLLALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCKSN--VTADDFFFSGLDKA 66
           FLL  F+A +  +  ASDPSSLQDFCVA   ++V VNG VCK +  V A+DFFFSGL  A
Sbjct: 5   FLLLAFLAITCAIASASDPSSLQDFCVADSKASVLVNGFVCKDSKLVDANDFFFSGLHLA 64

Query: 67  GNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEILTVLEGTLL 126
           GNTSN VGS+VT VN VQIPGLNTLGIS+ R+DYAPWGINPPHTHPRATE+LTVLEG+L 
Sbjct: 65  GNTSNAVGSRVTPVNAVQIPGLNTLGISIVRIDYAPWGINPPHTHPRATEVLTVLEGSLK 124

Query: 127 VGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIGYVPAVALAALSSQNPGVITIGNA 186
           VGFVTSN EN L TKVL KGDVFVFPVGL+HFQQN+GY  AVA+AAL+SQNPGVIT+ NA
Sbjct: 125 VGFVTSNPENHLITKVLRKGDVFVFPVGLVHFQQNVGYGNAVAIAALNSQNPGVITVANA 184

Query: 187 VFGSTPDIPANILAKAFQIEEATITKIQSKF 216
           VFGS PDI A++LAKAFQ+++  +   QSKF
Sbjct: 185 VFGSKPDISADVLAKAFQVDKNRVYNFQSKF 215

[Close]

BLAST of Cla009840 vs. NCBI nr
Match: gi|659078077|ref|XP_008439537.1| (PREDICTED: putative germin-like protein 2-1 [Cucumis melo])

HSP 1 Score: 362.8 bits (930), Expect = 4.0e-97
Identity = 191/218 (87.61%), Postives = 197/218 (90.37%), Query Frame = 1


Query: 1   MASSQLFL-LALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCKSN--VTADDFF 60
           MASSQL L LA+FVATSSLV  ASDPS LQDFCVA  N TVKVNGVVCK    VT DDFF
Sbjct: 1   MASSQLILILAVFVATSSLV-FASDPSPLQDFCVADPNCTVKVNGVVCKDPKVVTVDDFF 60

Query: 61  FSGLDKAGNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEILT 120
           FSGLDKAGNTSN VGSKVTA NVVQIPGLNTLGISLAR+DYAPWGINPPHTHPRA+EILT
Sbjct: 61  FSGLDKAGNTSNAVGSKVTAANVVQIPGLNTLGISLARIDYAPWGINPPHTHPRASEILT 120

Query: 121 VLEGTLLVGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIGYVPAVALAALSSQNPG 180
           VLEGTLLVGFV+SN ENRLFTKVLYKGD FVFPVGLIHFQQNIGY P VALAALSSQNPG
Sbjct: 121 VLEGTLLVGFVSSNPENRLFTKVLYKGDAFVFPVGLIHFQQNIGYGPVVALAALSSQNPG 180

Query: 181 VITIGNAVFGSTPDIPANILAKAFQIEEATITKIQSKF 216
           VITI NAVFGS PDIPANILAKAFQ++EATITKIQSKF
Sbjct: 181 VITIANAVFGSNPDIPANILAKAFQVDEATITKIQSKF 217

[Close]

BLAST of Cla009840 vs. NCBI nr
Match: gi|449433664|ref|XP_004134617.1| (PREDICTED: putative germin-like protein 2-1 [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 2.6e-96
Identity = 189/219 (86.30%), Postives = 197/219 (89.95%), Query Frame = 1


Query: 1   MASSQLFLL--ALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCKSN--VTADDF 60
           MASSQL +L  A+FVATSSLV  ASDPS LQDFCVA  N TVKVNGVVCK    VT +DF
Sbjct: 1   MASSQLIILILAVFVATSSLV-FASDPSPLQDFCVADPNCTVKVNGVVCKDPKAVTVEDF 60

Query: 61  FFSGLDKAGNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEIL 120
           FF+GLDKAGNTSN VGSKVTA NV QIPGLNTLGISLAR+DYAPWGINPPHTHPRA+EIL
Sbjct: 61  FFTGLDKAGNTSNAVGSKVTAANVAQIPGLNTLGISLARIDYAPWGINPPHTHPRASEIL 120

Query: 121 TVLEGTLLVGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIGYVPAVALAALSSQNP 180
           TVLEGTLLVGFVTSNTENRLFTKVLYKGD FVFPVGLIHFQQNIGY PAVALAALSSQNP
Sbjct: 121 TVLEGTLLVGFVTSNTENRLFTKVLYKGDAFVFPVGLIHFQQNIGYGPAVALAALSSQNP 180

Query: 181 GVITIGNAVFGSTPDIPANILAKAFQIEEATITKIQSKF 216
           GVITI NAVFGS PDIPANILAKAFQ++ ATITKIQSKF
Sbjct: 181 GVITIANAVFGSNPDIPANILAKAFQVDVATITKIQSKF 218

[Close]

BLAST of Cla009840 vs. NCBI nr
Match: gi|449433658|ref|XP_004134614.1| (PREDICTED: putative germin-like protein 2-3 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 5.4e-86
Identity = 166/215 (77.21%), Postives = 183/215 (85.12%), Query Frame = 1


Query: 3   SSQLFLLALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCKSN--VTADDFFFSG 62
           +S+  +    + T ++ V ASDPS LQDFCVA   +TVKVNGVVCK +  VTADDFFFSG
Sbjct: 2   ASKAIIFGFLIVTYAVAVFASDPSHLQDFCVADPTNTVKVNGVVCKESEVVTADDFFFSG 61

Query: 63  LDKAGNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEILTVLE 122
           L K GNTSNPVGSKVT VNVVQIPGLNTLGISLAR+DYAP GINPPHTHPRATEILTVLE
Sbjct: 62  LHKVGNTSNPVGSKVTPVNVVQIPGLNTLGISLARIDYAPLGINPPHTHPRATEILTVLE 121

Query: 123 GTLLVGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIGYVPAVALAALSSQNPGVIT 182
           GTL VGFVTSNTENRLFTKVL KGDVFVFPVGL+HFQ NIG+ PAVALAALSSQNPGVIT
Sbjct: 122 GTLHVGFVTSNTENRLFTKVLQKGDVFVFPVGLVHFQHNIGHGPAVALAALSSQNPGVIT 181

Query: 183 IGNAVFGSTPDIPANILAKAFQIEEATITKIQSKF 216
           IGNAVFGS PDI  +IL+KAFQ +++ I  IQ+KF
Sbjct: 182 IGNAVFGSKPDISTDILSKAFQTDKSIIAGIQAKF 216

[Close]

BLAST of Cla009840 vs. NCBI nr
Match: gi|449433660|ref|XP_004134615.1| (PREDICTED: putative germin-like protein 2-1 [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 1.9e-83
Identity = 165/217 (76.04%), Postives = 177/217 (81.57%), Query Frame = 1


Query: 1   MASSQLFLLALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCKSN--VTADDFFF 60
           MA+S  FL   F A +  + +ASDPS LQDFCVA  NS VKVNG VCK    V A DFF 
Sbjct: 1   MAASAFFLT--FFALTCSIALASDPSPLQDFCVADKNSPVKVNGFVCKDPNVVEAKDFFM 60

Query: 61  SGLDKAGNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEILTV 120
           SGL+ AG+T+NPVGS VT  NVVQIPGLNTLGIS+ R+DYAPWGIN PHTHPRATEILTV
Sbjct: 61  SGLNVAGDTNNPVGSVVTPANVVQIPGLNTLGISMVRIDYAPWGINAPHTHPRATEILTV 120

Query: 121 LEGTLLVGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIGYVPAVALAALSSQNPGV 180
           LEGTLLVGFVTSNTENRL TK L KGDVFVFPVGL+HFQQNIGY PAVA+AALSSQNPGV
Sbjct: 121 LEGTLLVGFVTSNTENRLITKTLNKGDVFVFPVGLVHFQQNIGYGPAVAIAALSSQNPGV 180

Query: 181 ITIGNAVFGSTPDIPANILAKAFQIEEATITKIQSKF 216
           ITI NAVFGS PDIP NILAKAFQ + A I  IQSKF
Sbjct: 181 ITIANAVFGSKPDIPTNILAKAFQTDSAIIANIQSKF 215

[Close]

BLAST of Cla009840 vs. NCBI nr
Match: gi|659078081|ref|XP_008439539.1| (PREDICTED: putative germin-like protein 2-1 [Cucumis melo])

HSP 1 Score: 314.7 bits (805), Expect = 1.3e-82
Identity = 160/215 (74.42%), Postives = 176/215 (81.86%), Query Frame = 1


Query: 3   SSQLFLLALFVATSSLVVIASDPSSLQDFCVAGLNSTVKVNGVVCKSN--VTADDFFFSG 62
           ++ +F+L  F A +  + +ASDPS LQDFCVA  N+ VKVNG VCK    V A DFF SG
Sbjct: 2   AAPVFILITFFALTCSIALASDPSPLQDFCVADRNNPVKVNGFVCKDPNVVEAKDFFMSG 61

Query: 63  LDKAGNTSNPVGSKVTAVNVVQIPGLNTLGISLARVDYAPWGINPPHTHPRATEILTVLE 122
           L+ AG+T+NPVGS VT  NVVQIPGLNTLGIS+ R+DYAPWGIN PHTHPRATEILTVLE
Sbjct: 62  LNVAGDTNNPVGSAVTPANVVQIPGLNTLGISMVRIDYAPWGINAPHTHPRATEILTVLE 121

Query: 123 GTLLVGFVTSNTENRLFTKVLYKGDVFVFPVGLIHFQQNIGYVPAVALAALSSQNPGVIT 182
           GTLLVGFVTSNTENRL TK L KGDVFVFPVGL+HFQQNIGY PAVA+AALSSQNPGVIT
Sbjct: 122 GTLLVGFVTSNTENRLITKTLNKGDVFVFPVGLVHFQQNIGYGPAVAIAALSSQNPGVIT 181

Query: 183 IGNAVFGSTPDIPANILAKAFQIEEATITKIQSKF 216
           I NAVFGS PDI  NILAKAFQ + A I  IQSKF
Sbjct: 182 IANAVFGSKPDISTNILAKAFQTDSAIIANIQSKF 216

The following BLAST results are available for this feature:

BLAST of Cla009840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GL21_ORYSJ	7.4e-75	69.59	Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600...	[more]
GL23_ORYSJ	9.6e-75	71.72	Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800...	[more]
GL22_ORYSJ	7.6e-72	67.14	Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700...	[more]
GL82_ORYSJ	3.8e-71	66.06	Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1	[more]
GL811_ORYSJ	1.4e-70	65.14	Germin-like protein 8-11 OS=Oryza sativa subsp. japonica GN=Os08g0190100 PE=1 SV...	[more]

BLAST of Cla009840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP70_CUCSA	1.8e-96	86.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525610 PE=3 SV=1	[more]
A0A0A0KIA8_CUCSA	3.8e-86	77.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525550 PE=3 SV=1	[more]
A0A0A0KIB9_CUCSA	1.9e-82	75.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G525600 PE=3 SV=1	[more]
M5WIS3_PRUPE	1.2e-79	73.02	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017161mg PE=3 SV=1	[more]
M5X6A4_PRUPE	2.0e-79	71.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026076mg PE=3 SV=1	[more]

BLAST of Cla009840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659078077\|ref\|XP_008439537.1\|	4.0e-97	87.61	PREDICTED: putative germin-like protein 2-1 [Cucumis melo]	[more]
gi\|449433664\|ref\|XP_004134617.1\|	2.6e-96	86.30	PREDICTED: putative germin-like protein 2-1 [Cucumis sativus]	[more]
gi\|449433658\|ref\|XP_004134614.1\|	5.4e-86	77.21	PREDICTED: putative germin-like protein 2-3 [Cucumis sativus]	[more]
gi\|449433660\|ref\|XP_004134615.1\|	1.9e-83	76.04	PREDICTED: putative germin-like protein 2-1 [Cucumis sativus]	[more]
gi\|659078081\|ref\|XP_008439539.1\|	1.3e-82	74.42	PREDICTED: putative germin-like protein 2-1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001929	Germin
IPR006045	Cupin_1
IPR011051	RmlC_Cupin_sf
IPR014710	RmlC-like_jellyroll
IPR019780	Germin_Mn-BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0030145	manganese ion binding
GO:0045735	nutrient reservoir activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0045735	nutrient reservoir activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009840	Cla009840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001929	Germin	PRINTS	PR00325	GERMIN	coord: 107..127 score: 6.4E-28coord: 139..159 score: 6.4E-28coord: 172..187 score: 6.4
IPR006045	Cupin 1	PFAM	PF00190	Cupin_1	coord: 60..207 score: 7.5
IPR006045	Cupin 1	SMART	SM00835	Cupin_1_3	coord: 59..209 score: 4.5
IPR011051	RmlC-like cupin domain	unknown	SSF51182	RmlC-like cupins	coord: 24..214 score: 2.43
IPR014710	RmlC-like jelly roll fold	GENE3D	G3DSA:2.60.120.10		coord: 23..214 score: 4.4
IPR019780	Germin, manganese binding site	PROSITE	PS00725	GERMIN	coord: 102..115 scor
None	No IPR available	PANTHER	PTHR31238	FAMILY NOT NAMED	coord: 2..215 score: 7.6E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009840	Cucurbita maxima (Rimu)	cmawmB201
Cla009840	Cucurbita maxima (Rimu)	cmawmB382
Cla009840	Cucurbita maxima (Rimu)	cmawmB628
Cla009840	Cucurbita maxima (Rimu)	cmawmB826
Cla009840	Cucurbita moschata (Rifu)	cmowmB188
Cla009840	Cucurbita moschata (Rifu)	cmowmB375
Cla009840	Cucurbita moschata (Rifu)	cmowmB619
Cla009840	Cucurbita moschata (Rifu)	cmowmB816
Cla009840	Melon (DHL92) v3.5.1	mewmB172
Cla009840	Melon (DHL92) v3.5.1	mewmB572
Cla009840	Watermelon (Charleston Gray)	wcgwmB141
Cla009840	Cucumber (Chinese Long) v2	cuwmB058
Cla009840	Cucumber (Chinese Long) v2	cuwmB500
Cla009840	Cucurbita pepo (Zucchini)	cpewmB047
Cla009840	Cucurbita pepo (Zucchini)	cpewmB074
Cla009840	Cucurbita pepo (Zucchini)	cpewmB482
Cla009840	Cucurbita pepo (Zucchini)	cpewmB513
Cla009840	Bottle gourd (USVL1VR-Ls)	lsiwmB144
Cla009840	Bottle gourd (USVL1VR-Ls)	lsiwmB200
Cla009840	Cucumber (Gy14) v2	cgybwmB468
Cla009840	Melon (DHL92) v3.6.1	medwmB561
Cla009840	Silver-seed gourd	carwmB0292
Cla009840	Silver-seed gourd	carwmB0396
Cla009840	Silver-seed gourd	carwmB0730
Cla009840	Cucumber (Chinese Long) v3	cucwmB066
Cla009840	Cucumber (Chinese Long) v3	cucwmB526
Cla009840	Watermelon (97103) v2	wmwmbB234
Cla009840	Wax gourd	wgowmB427
Cla009840	Wax gourd	wgowmB515
Cla009840	Watermelon (97103) v1	wmwmB083
Cla009840	Cucumber (Gy14) v1	cgywmB026
Cla009840	Cucumber (Gy14) v1	cgywmB318