Cla009809 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009809
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	F-box protein SKIP19 (AHRD V1 ***- SKI19_ARATH)
Location	Chr1 : 33111995 .. 33112261 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTATGATTCTGCAGAGGCTAGGCGCCATTGAAATCCTCCACAGCGCTCAAGATGTCTGCTCTTCGTGGCGGCGTCTCATCGATATGCGCAATTTGGGAGAAATGTATGCTTTGTATTGCGATTTGGAGGCTACCTGCGCCTACGCTGTTGATCTTAGTTGCGGCCAATTGATCGACATCAACATTGAATTCTTTGGCACAGATAAATTGCTCCAATACATCGCTCGGAGGTATCAATTTTATCTTTATGTTCTTCTGTTCTAG

mRNA sequence

ATGTGTATGATTCTGCAGAGGCTAGGCGCCATTGAAATCCTCCACAGCGCTCAAGATGTCTGCTCTTCGTGGCGGCGTCTCATCGATATGCGCAATTTGGGAGAAATGTATGCTTTGTATTGCGATTTGGAGGCTACCTGCGCCTACGCTGTTGATCTTAGTTGCGGCCAATTGATCGACATCAACATTGAATTCTTTGGCACAGATAAATTGCTCCAATACATCGCTCGGAGGTATCAATTTTATCTTTATGTTCTTCTGTTCTAG

Coding sequence (CDS)

ATGTGTATGATTCTGCAGAGGCTAGGCGCCATTGAAATCCTCCACAGCGCTCAAGATGTCTGCTCTTCGTGGCGGCGTCTCATCGATATGCGCAATTTGGGAGAAATGTATGCTTTGTATTGCGATTTGGAGGCTACCTGCGCCTACGCTGTTGATCTTAGTTGCGGCCAATTGATCGACATCAACATTGAATTCTTTGGCACAGATAAATTGCTCCAATACATCGCTCGGAGGTATCAATTTTATCTTTATGTTCTTCTGTTCTAG

Protein sequence

MCMILQRLGAIEILHSAQDVCSSWRRLIDMRNLGEMYALYCDLEATCAYAVDLSCGQLIDINIEFFGTDKLLQYIARRYQFYLYVLLF

Homology

[Close]

BLAST of Cla009809 vs. Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-14
Identity = 45/84 (53.57%), Postives = 52/84 (61.90%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLS 63
           IL RLGAIEIL +AQ VC SWRR+         IDM NLG++  +  +LE  C +AVD S
Sbjct: 30  ILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDMDYNLEIMCRHAVDRS 89

Query: 64  CGQLIDINIEFFGTDKLLQYIARR 79
            G L+DI I +FGT  LL YIA R
Sbjct: 90  QGGLVDIGIWYFGTVDLLNYIAHR 113

[Close]

BLAST of Cla009809 vs. Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-11
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLS 63
           IL RLGAIEIL +AQ VC  W R+         ID+ N  +  A   DLE+ C +AVD S
Sbjct: 192 ILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKYDLESMCRHAVDRS 251

Query: 64  CGQLIDINIEFFGTDKLLQYIARR 79
            G LI+I I ++GT+ L+ YIA R
Sbjct: 252 HGGLIEIEIWYYGTNDLIMYIADR 275

[Close]

BLAST of Cla009809 vs. Swiss-Prot
Match: FBL22_ARATH (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-10
Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLS 63
           IL RL  +EIL +A+ VC SWRR+         IDMRNL  +Y +Y  +EA C + VDLS
Sbjct: 38  ILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYCIYA-MEACCRHVVDLS 97

Query: 64  CGQLIDINIE--FFGTDKLLQYIARR 79
            G L++ NI+   F T  LL Y+A R
Sbjct: 98  QGGLLEFNIDQWRFQTTSLLNYMAER 122

[Close]

BLAST of Cla009809 vs. Swiss-Prot
Match: FBL9_ARATH (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.4e-10
Identity = 41/87 (47.13%), Postives = 49/87 (56.32%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWRRL---------IDMR---NLGEMYALYCDLEATCAYAV 63
           IL RLGAIEIL +AQ VC SWRR+         ID+R   NL     L+  +E  C  AV
Sbjct: 32  ILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVELFYVIEPLCCRAV 91

Query: 64  DLSCGQLIDINIEFFGTDKLLQYIARR 79
           DLS G L++INI++      L YIA R
Sbjct: 92  DLSQGGLLEINIDYLVNTSFLNYIADR 118

[Close]

BLAST of Cla009809 vs. Swiss-Prot
Match: FB221_ARATH (Putative F-box protein At4g05475 OS=Arabidopsis thaliana GN=At4g05475 PE=3 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 9.2e-08
Identity = 33/81 (40.74%), Postives = 43/81 (53.09%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWRRLID------MRNLGEMYALYCDLEATCAYAVDLSCGQ 63
           IL RL   +IL +A+ +C +WRR+          NL +      D E+ C + VDLS G 
Sbjct: 51  ILLRLSVTDILDNARKLCRAWRRICKDPSMWRKINLRDCLMYEFDFESMCRHIVDLSQGG 110

Query: 64  LIDINIEFFGTDKLLQYIARR 79
           L++INIE F +D LL YI  R
Sbjct: 111 LLEINIEHFVSDSLLSYIVDR 131

[Close]

BLAST of Cla009809 vs. TrEMBL
Match: A0A067KSZ2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09257 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.9e-17
Identity = 49/84 (58.33%), Postives = 58/84 (69.05%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLS 63
           IL R+GA+EIL++A+ VCS+WR         R IDM NLG  + + CD E  C YAVD S
Sbjct: 29  ILSRVGAVEILNTARLVCSTWRTICNDPSMWRSIDMHNLGNSWDVECDPEKMCRYAVDKS 88

Query: 64  CGQLIDINIEFFGTDKLLQYIARR 79
           CG LIDINIE+FGTD LL YIA R
Sbjct: 89  CGGLIDINIEYFGTDDLLSYIADR 112

[Close]

BLAST of Cla009809 vs. TrEMBL
Match: A0A0D2NIS0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G267100 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-16
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLS 63
           IL R+GAIEIL+SAQ+VCS WR         R IDM NLG+++ +  DL   C +AVD S
Sbjct: 36  ILSRIGAIEILNSAQNVCSLWRNICKDPLMWRSIDMHNLGDLWDMDYDLAKMCVHAVDRS 95

Query: 64  CGQLIDINIEFFGTDKLLQYIARR 79
           CG L+DIN+E+FGTD LL +I+ R
Sbjct: 96  CGHLLDINVEYFGTDALLLHISER 119

[Close]

BLAST of Cla009809 vs. TrEMBL
Match: A0A0B0MKV5_GOSAR (F-box SKIP19-like protein OS=Gossypium arboreum GN=F383_07998 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-16
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLS 63
           IL R+GAIEIL+SAQ+VCS WR         R IDM NLG+++ +  DL   C +AVD S
Sbjct: 21  ILSRIGAIEILNSAQNVCSLWRNICKDPLMWRSIDMHNLGDLWDMDYDLAKMCVHAVDRS 80

Query: 64  CGQLIDINIEFFGTDKLLQYIARR 79
           CG L+DIN+E+FGTD LL +I+ R
Sbjct: 81  CGHLLDINVEYFGTDALLLHISER 104

[Close]

BLAST of Cla009809 vs. TrEMBL
Match: A0A067GJ33_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021667mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.4e-16
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLS 63
           IL ++GAI++L SAQ VCSSW R+         IDM NLG+++ +  DLE  C +AVD S
Sbjct: 24  ILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRS 83

Query: 64  CGQLIDINIEFFGTDKLLQYIARR 79
            GQL+ INIE+FGTD+LLQYIA R
Sbjct: 84  NGQLLSINIEYFGTDELLQYIANR 107

[Close]

BLAST of Cla009809 vs. TrEMBL
Match: V4W7P3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016034mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.4e-16
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWRRL---------IDMRNLGEMYALYCDLEATCAYAVDLS 63
           IL ++GAI++L SAQ VCSSW R+         IDM NLG+++ +  DLE  C +AVD S
Sbjct: 24  ILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRS 83

Query: 64  CGQLIDINIEFFGTDKLLQYIARR 79
            GQL+ INIE+FGTD+LLQYIA R
Sbjct: 84  NGQLLSINIEYFGTDELLQYIANR 107

[Close]

BLAST of Cla009809 vs. NCBI nr
Match: gi|1009105556|ref|XP_015878944.1| (PREDICTED: F-box protein SKIP19 [Ziziphus jujuba])

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 53/84 (63.10%), Postives = 62/84 (73.81%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLS 63
           IL RLGAIEIL SAQ+VCSSWR         R IDMRN G+ Y +  DLE  C +A+DLS
Sbjct: 27  ILSRLGAIEILTSAQNVCSSWRNICKDPLMWRTIDMRNPGDTYGMDYDLETMCRHAIDLS 86

Query: 64  CGQLIDINIEFFGTDKLLQYIARR 79
           CGQL+DINIEFFGTD+LL+Y+  R
Sbjct: 87  CGQLVDINIEFFGTDELLKYLTDR 110

[Close]

BLAST of Cla009809 vs. NCBI nr
Match: gi|802620682|ref|XP_012075669.1| (PREDICTED: F-box protein SKIP19-like [Jatropha curcas])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 49/84 (58.33%), Postives = 58/84 (69.05%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLS 63
           IL R+GA+EIL++A+ VCS+WR         R IDM NLG  + + CD E  C YAVD S
Sbjct: 29  ILSRVGAVEILNTARLVCSTWRTICNDPSMWRSIDMHNLGNSWDVECDPEKMCRYAVDKS 88

Query: 64  CGQLIDINIEFFGTDKLLQYIARR 79
           CG LIDINIE+FGTD LL YIA R
Sbjct: 89  CGGLIDINIEYFGTDDLLSYIADR 112

[Close]

BLAST of Cla009809 vs. NCBI nr
Match: gi|747097376|ref|XP_011096650.1| (PREDICTED: F-box protein SKIP19-like [Sesamum indicum])

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 48/84 (57.14%), Postives = 62/84 (73.81%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLS 63
           IL RLGAIEIL SAQ VC++WR         R+IDM+NLG+++ +  DL   C +AVD  
Sbjct: 50  ILHRLGAIEILESAQKVCTTWRRVCQDPTMWRVIDMKNLGDLHDMPYDLSIMCRHAVDRC 109

Query: 64  CGQLIDINIEFFGTDKLLQYIARR 79
            GQLIDINIE+FGTD+LL+YI++R
Sbjct: 110 QGQLIDINIEYFGTDELLRYISQR 133

[Close]

BLAST of Cla009809 vs. NCBI nr
Match: gi|728810325|gb|KHF99555.1| (F-box SKIP19 -like protein [Gossypium arboreum])

HSP 1 Score: 91.3 bits (225), Expect = 9.2e-16
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLS 63
           IL R+GAIEIL+SAQ+VCS WR         R IDM NLG+++ +  DL   C +AVD S
Sbjct: 21  ILSRIGAIEILNSAQNVCSLWRNICKDPLMWRSIDMHNLGDLWDMDYDLAKMCVHAVDRS 80

Query: 64  CGQLIDINIEFFGTDKLLQYIARR 79
           CG L+DIN+E+FGTD LL +I+ R
Sbjct: 81  CGHLLDINVEYFGTDALLLHISER 104

[Close]

BLAST of Cla009809 vs. NCBI nr
Match: gi|823161570|ref|XP_012480661.1| (PREDICTED: F-box protein SKIP19-like [Gossypium raimondii])

HSP 1 Score: 91.3 bits (225), Expect = 9.2e-16
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1


Query: 4   ILQRLGAIEILHSAQDVCSSWR---------RLIDMRNLGEMYALYCDLEATCAYAVDLS 63
           IL R+GAIEIL+SAQ+VCS WR         R IDM NLG+++ +  DL   C +AVD S
Sbjct: 36  ILSRIGAIEILNSAQNVCSLWRNICKDPLMWRSIDMHNLGDLWDMDYDLAKMCVHAVDRS 95

Query: 64  CGQLIDINIEFFGTDKLLQYIARR 79
           CG L+DIN+E+FGTD LL +I+ R
Sbjct: 96  CGHLLDINVEYFGTDALLLHISER 119

The following BLAST results are available for this feature:

BLAST of Cla009809 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKI19_ARATH	1.7e-14	53.57	F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1	[more]
FBL23_ARATH	1.4e-11	47.62	Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=3 SV=1	[more]
FBL22_ARATH	1.2e-10	46.51	Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=3 SV=1	[more]
FBL9_ARATH	4.4e-10	47.13	Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=3 SV=1	[more]
FB221_ARATH	9.2e-08	40.74	Putative F-box protein At4g05475 OS=Arabidopsis thaliana GN=At4g05475 PE=3 SV=2	[more]

BLAST of Cla009809 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067KSZ2_JATCU	9.9e-17	58.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09257 PE=4 SV=1	[more]
A0A0D2NIS0_GOSRA	6.4e-16	54.76	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G267100 PE=4 SV=1	[more]
A0A0B0MKV5_GOSAR	6.4e-16	54.76	F-box SKIP19-like protein OS=Gossypium arboreum GN=F383_07998 PE=4 SV=1	[more]
A0A067GJ33_CITSI	8.4e-16	55.95	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021667mg PE=4 SV=1	[more]
V4W7P3_9ROSI	8.4e-16	55.95	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016034mg PE=4 SV=1	[more]

BLAST of Cla009809 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1009105556\|ref\|XP_015878944.1\|	1.1e-19	63.10	PREDICTED: F-box protein SKIP19 [Ziziphus jujuba]	[more]
gi\|802620682\|ref\|XP_012075669.1\|	1.4e-16	58.33	PREDICTED: F-box protein SKIP19-like [Jatropha curcas]	[more]
gi\|747097376\|ref\|XP_011096650.1\|	1.9e-16	57.14	PREDICTED: F-box protein SKIP19-like [Sesamum indicum]	[more]
gi\|728810325\|gb\|KHF99555.1\|	9.2e-16	54.76	F-box SKIP19 -like protein [Gossypium arboreum]	[more]
gi\|823161570\|ref\|XP_012480661.1\|	9.2e-16	54.76	PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009809	Cla009809.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 2..33 score: 8.
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 2..30 score: 0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009809	Cucurbita maxima (Rimu)	cmawmB201
Cla009809	Cucurbita maxima (Rimu)	cmawmB628
Cla009809	Cucurbita maxima (Rimu)	cmawmB826
Cla009809	Cucurbita moschata (Rifu)	cmowmB188
Cla009809	Cucurbita moschata (Rifu)	cmowmB619
Cla009809	Cucurbita moschata (Rifu)	cmowmB816
Cla009809	Melon (DHL92) v3.5.1	mewmB572
Cla009809	Watermelon (Charleston Gray)	wcgwmB141
Cla009809	Watermelon (Charleston Gray)	wcgwmB238
Cla009809	Cucumber (Chinese Long) v2	cuwmB500
Cla009809	Cucurbita pepo (Zucchini)	cpewmB074
Cla009809	Cucurbita pepo (Zucchini)	cpewmB482
Cla009809	Cucurbita pepo (Zucchini)	cpewmB513
Cla009809	Bottle gourd (USVL1VR-Ls)	lsiwmB144
Cla009809	Bottle gourd (USVL1VR-Ls)	lsiwmB200
Cla009809	Cucumber (Gy14) v2	cgybwmB468
Cla009809	Melon (DHL92) v3.6.1	medwmB561
Cla009809	Silver-seed gourd	carwmB0292
Cla009809	Silver-seed gourd	carwmB0730
Cla009809	Cucumber (Chinese Long) v3	cucwmB526
Cla009809	Watermelon (97103) v2	wmwmbB234
Cla009809	Wax gourd	wgowmB427
Cla009809	Watermelon (97103) v1	wmwmB084
Cla009809	Cucumber (Gy14) v1	cgywmB026