Cla009584 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009584
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALL)
Location	Chr3 : 16608972 .. 16609292 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCGCACCGGCCTCTTCTTCGACCCCTTCTCCGCCAGCAAGCTCTTCACAGCCTCCGCTCTTTCGTCCTTCTCCACTCTCGACTATGCCCGCGACGTGTTCGACCAAATTCCCCAACCAAATCTCTACATTTGGAATACCCTCATTCGAGCTTACGCTTCCAGCTCCGACCCTTTTCAGAGTTTCGTAATATTTCTGGATTTGCTTGATAAATGTGAGGATTTGCCCAATAATTTCACTTTCCCATTTGTCATTAAGGCGGCTTCGGAGCTAAAAGCGTCACGGGTCGGCAGAGCTGTTCATGGAATGGCGATTTAG

mRNA sequence

ATGCTCCGCACCGGCCTCTTCTTCGACCCCTTCTCCGCCAGCAAGCTCTTCACAGCCTCCGCTCTTTCGTCCTTCTCCACTCTCGACTATGCCCGCGACGTGTTCGACCAAATTCCCCAACCAAATCTCTACATTTGGAATACCCTCATTCGAGCTTACGCTTCCAGCTCCGACCCTTTTCAGAGTTTCGTAATATTTCTGGATTTGCTTGATAAATGTGAGGATTTGCCCAATAATTTCACTTTCCCATTTGTCATTAAGGCGGCTTCGGAGCTAAAAGCGTCACGGGTCGGCAGAGCTGTTCATGGAATGGCGATTTAG

Coding sequence (CDS)

ATGCTCCGCACCGGCCTCTTCTTCGACCCCTTCTCCGCCAGCAAGCTCTTCACAGCCTCCGCTCTTTCGTCCTTCTCCACTCTCGACTATGCCCGCGACGTGTTCGACCAAATTCCCCAACCAAATCTCTACATTTGGAATACCCTCATTCGAGCTTACGCTTCCAGCTCCGACCCTTTTCAGAGTTTCGTAATATTTCTGGATTTGCTTGATAAATGTGAGGATTTGCCCAATAATTTCACTTTCCCATTTGTCATTAAGGCGGCTTCGGAGCTAAAAGCGTCACGGGTCGGCAGAGCTGTTCATGGAATGGCGATTTAG

Protein sequence

MLRTGLFFDPFSASKLFTASALSSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHGMAI

Homology

[Close]

BLAST of Cla009584 vs. Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.4e-31
Identity = 61/106 (57.55%), Postives = 82/106 (77.36%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALSSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPF 60
           M+RTG F DP+SASKLF  +ALSSF++L+YAR VFD+IP+PN + WNTLIRAYAS  DP 
Sbjct: 53  MIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPV 112

Query: 61  QSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHGMAI 107
            S   FLD++ + +  PN +TFPF+IKAA+E+ +  +G+++HGMA+
Sbjct: 113 LSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAV 158

[Close]

BLAST of Cla009584 vs. Swiss-Prot
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-14
Identity = 37/105 (35.24%), Postives = 60/105 (57.14%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALSSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPF 60
           M+  GL  DPF++S+L    ALS    LDY+  +   I  PN++ WN  IR ++ S +P 
Sbjct: 76  MIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPK 135

Query: 61  QSFVIFLDLLDK--CEDLPNNFTFPFVIKAASELKASRVGRAVHG 104
           +SF+++  +L    CE  P++FT+P + K  ++L+ S +G  + G
Sbjct: 136 ESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILG 180

HSP 2 Score: 30.8 bits (68), Expect = 1.1e+01
Identity = 18/70 (25.71%), Postives = 34/70 (48.57%), Query Frame = 1


Query: 23  SSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNNFTF 82
           +S   ++ AR VFD+ P  +L  WN LI  Y    +  ++  ++  L++     P++ T 
Sbjct: 202 ASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVY-KLMESEGVKPDDVTM 261

Query: 83  PFVIKAASEL 93
             ++ + S L
Sbjct: 262 IGLVSSCSML 270

[Close]

BLAST of Cla009584 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.7e-14
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALSS-FSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDP 60
           M++ GL    ++ SKL     LS  F  L YA  VF  I +PNL IWNT+ R +A SSDP
Sbjct: 56  MIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDP 115

Query: 61  FQSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHG 104
             +  +++ ++     LPN++TFPFV+K+ ++ KA + G+ +HG
Sbjct: 116 VSALKLYVCMI-SLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHG 158

HSP 2 Score: 43.1 bits (100), Expect = 2.2e-03
Identity = 21/75 (28.00%), Postives = 41/75 (54.67%), Query Frame = 1


Query: 28  LDYARDVFDQIPQPNLYIWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNNFTFPFVIK 87
           ++ A+ +FD+IP  ++  WN +I  YA + +  ++  +F D++ K    P+  T   V+ 
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM-KTNVRPDESTMVTVVS 275

Query: 88  AASELKASRVGRAVH 103
           A ++  +  +GR VH
Sbjct: 276 ACAQSGSIELGRQVH 289

HSP 3 Score: 42.0 bits (97), Expect = 4.8e-03
Identity = 22/80 (27.50%), Postives = 42/80 (52.50%), Query Frame = 1


Query: 23  SSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNNFTF 82
           S    L+ A  +F+++P  ++  WNTLI  Y   +   ++ ++F ++L +  + PN+ T 
Sbjct: 312 SKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML-RSGETPNDVTM 371

Query: 83  PFVIKAASELKASRVGRAVH 103
             ++ A + L A  +GR +H
Sbjct: 372 LSILPACAHLGAIDIGRWIH 390

[Close]

BLAST of Cla009584 vs. Swiss-Prot
Match: PP321_ARATH (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 8.8e-13
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALS-SFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDP 60
           ML+TGLF D FSASKL   +A +    T+ YA  + ++I  PN +  N++IRAYA+SS P
Sbjct: 62  MLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTP 121

Query: 61  FQSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHGMAI 107
             +  +F ++L      P+ ++F FV+KA +       GR +HG+ I
Sbjct: 122 EVALTVFREML-LGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFI 167

HSP 2 Score: 45.4 bits (106), Expect = 4.4e-04
Identity = 24/86 (27.91%), Postives = 40/86 (46.51%), Query Frame = 1


Query: 17  FTASALSSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPFQSFVIFLDLLDKCEDL 76
           F  S  ++   +  A++VFD +P  ++  WN ++ AYA      +   +F  +LD   + 
Sbjct: 242 FMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEK 301

Query: 77  PNNFTFPFVIKAASELKASRVGRAVH 103
           P+ FT   V+ A + L +   G  VH
Sbjct: 302 PDGFTLVSVLSACASLGSLSQGEWVH 327

[Close]

BLAST of Cla009584 vs. Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.8e-13
Identity = 41/111 (36.94%), Postives = 62/111 (55.86%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALSSF-----STLDYARDVFDQIPQPNLYIWNTLIRAYAS 60
           +LRT L  D F AS+L       S      + L YA  +F QI  PNL+++N LIR +++
Sbjct: 35  LLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFST 94

Query: 61  SSDPFQSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHGMAI 107
            ++P ++F  +  +L K    P+N TFPF+IKA+SE++   VG   H   +
Sbjct: 95  GAEPSKAFGFYTQML-KSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIV 144

[Close]

BLAST of Cla009584 vs. TrEMBL
Match: A0A0A0M0R9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G530130 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-49
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALSSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPF 60
           MLRTGLFFDPFSASKLFTASALSSFSTLDYAR++FDQIPQPNLY WNTLIRAYASSSDPF
Sbjct: 48  MLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPF 107

Query: 61  QSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHGMAI 107
           QSFVIFLDLLDKCEDLPN FTFPFVIKAASELKASRVG AVHGMAI
Sbjct: 108 QSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAI 153

[Close]

BLAST of Cla009584 vs. TrEMBL
Match: W9RP57_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022020 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 8.5e-39
Identity = 79/106 (74.53%), Postives = 91/106 (85.85%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALSSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPF 60
           MLRTGLFFDPFSASKL T  A+SSFS+LDYA  VFDQIP+PNLY WNT+IRAYASSSDP 
Sbjct: 54  MLRTGLFFDPFSASKLITVCAMSSFSSLDYAHQVFDQIPKPNLYTWNTIIRAYASSSDPI 113

Query: 61  QSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHGMAI 107
           QS V+FL +LD+C + PN +T+PFV+KAASELKASRVGR  HGM +
Sbjct: 114 QSIVVFLRMLDQCCESPNKYTYPFVLKAASELKASRVGRGFHGMVM 159

[Close]

BLAST of Cla009584 vs. TrEMBL
Match: W9RP57_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022020 PE=4 SV=1)

HSP 1 Score: 39.3 bits (90), Expect = 3.5e+00
Identity = 29/100 (29.00%), Postives = 49/100 (49.00%), Query Frame = 1


Query: 5   GLFFDPFSASKLFTASALSSF----STLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPF 64
           G+      AS +F  ++L  F      LD A  VF  IP  ++  WN++I+A+     P 
Sbjct: 156 GMVMKSSLASDVFILNSLVHFYGSCDDLDSAYRVFLNIPSKDVVSWNSMIKAFVEGDCPD 215

Query: 65  QSFVIFLDLLDKCEDL-PNNFTFPFVIKAASELKASRVGR 100
           ++F +F ++  + E+L PN+ T   V+ A  +      GR
Sbjct: 216 EAFQLFREM--EMENLKPNDITMVGVLCACGKKADIEFGR 253

HSP 2 Score: 166.4 bits (420), Expect = 1.9e-38
Identity = 78/106 (73.58%), Postives = 92/106 (86.79%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALSSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPF 60
           MLRTG+ FDP+SASKL TASALSSFS+LDYAR VFDQIPQPN+Y WNTLIRAYASSSDP 
Sbjct: 53  MLRTGVLFDPYSASKLITASALSSFSSLDYARQVFDQIPQPNVYTWNTLIRAYASSSDPA 112

Query: 61  QSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHGMAI 107
           +S ++FLD+LD C + P+ +T+PF IKAASEL+A +VGR  HGMAI
Sbjct: 113 ESILVFLDMLDHCSECPDKYTYPFAIKAASELRALQVGRGFHGMAI 158

[Close]

BLAST of Cla009584 vs. TrEMBL
Match: V4SXW8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011151mg PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-35
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALSSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPF 60
           MLRTGLFFDP+SASKLFT  AL +FS+L+YAR++FDQIPQPNLY WNTLIRAY+SS++P 
Sbjct: 53  MLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 112

Query: 61  QSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHGMAI 107
           QSF+IFL L+      PN FTFPFVIKAA+ L   RVG+A+HGM I
Sbjct: 113 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 158

[Close]

BLAST of Cla009584 vs. TrEMBL
Match: A0A067DRQ6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035659mg PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-35
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALSSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPF 60
           MLRTGLFFDP+SASKLFT  AL +FS+L+YAR++FDQIPQPNLY WNTLIRAY+SS++P 
Sbjct: 61  MLRTGLFFDPYSASKLFTPCALGTFSSLEYAREMFDQIPQPNLYTWNTLIRAYSSSAEPI 120

Query: 61  QSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHGMAI 107
           QSF+IFL L+      PN FTFPFVIKAA+ L   RVG+A+HGM I
Sbjct: 121 QSFMIFLQLVYNSPYFPNEFTFPFVIKAAARLVQFRVGQAIHGMVI 166

[Close]

BLAST of Cla009584 vs. NCBI nr
Match: gi|659115085|ref|XP_008457379.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Cucumis melo])

HSP 1 Score: 204.9 bits (520), Expect = 6.9e-50
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALSSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPF 60
           MLRTGLFFDPFSASKLFTASALSSFSTLDYAR+VFDQIPQPNLY WN LIRAYASSSDPF
Sbjct: 48  MLRTGLFFDPFSASKLFTASALSSFSTLDYARNVFDQIPQPNLYTWNILIRAYASSSDPF 107

Query: 61  QSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHGMAI 107
           QSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVG AVHGMAI
Sbjct: 108 QSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGTAVHGMAI 153

[Close]

BLAST of Cla009584 vs. NCBI nr
Match: gi|449455158|ref|XP_004145320.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-49
Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALSSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPF 60
           MLRTGLFFDPFSASKLFTASALSSFSTLDYAR++FDQIPQPNLY WNTLIRAYASSSDPF
Sbjct: 48  MLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPF 107

Query: 61  QSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHGMAI 107
           QSFVIFLDLLDKCEDLPN FTFPFVIKAASELKASRVG AVHGMAI
Sbjct: 108 QSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAI 153

[Close]

BLAST of Cla009584 vs. NCBI nr
Match: gi|703130562|ref|XP_010104643.1| (hypothetical protein L484_022020 [Morus notabilis])

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-38
Identity = 79/106 (74.53%), Postives = 91/106 (85.85%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALSSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPF 60
           MLRTGLFFDPFSASKL T  A+SSFS+LDYA  VFDQIP+PNLY WNT+IRAYASSSDP 
Sbjct: 54  MLRTGLFFDPFSASKLITVCAMSSFSSLDYAHQVFDQIPKPNLYTWNTIIRAYASSSDPI 113

Query: 61  QSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHGMAI 107
           QS V+FL +LD+C + PN +T+PFV+KAASELKASRVGR  HGM +
Sbjct: 114 QSIVVFLRMLDQCCESPNKYTYPFVLKAASELKASRVGRGFHGMVM 159

[Close]

BLAST of Cla009584 vs. NCBI nr
Match: gi|703130562|ref|XP_010104643.1| (hypothetical protein L484_022020 [Morus notabilis])

HSP 1 Score: 39.3 bits (90), Expect = 5.0e+00
Identity = 29/100 (29.00%), Postives = 49/100 (49.00%), Query Frame = 1


Query: 5   GLFFDPFSASKLFTASALSSF----STLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPF 64
           G+      AS +F  ++L  F      LD A  VF  IP  ++  WN++I+A+     P 
Sbjct: 156 GMVMKSSLASDVFILNSLVHFYGSCDDLDSAYRVFLNIPSKDVVSWNSMIKAFVEGDCPD 215

Query: 65  QSFVIFLDLLDKCEDL-PNNFTFPFVIKAASELKASRVGR 100
           ++F +F ++  + E+L PN+ T   V+ A  +      GR
Sbjct: 216 EAFQLFREM--EMENLKPNDITMVGVLCACGKKADIEFGR 253

HSP 2 Score: 166.4 bits (420), Expect = 2.7e-38
Identity = 78/106 (73.58%), Postives = 92/106 (86.79%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALSSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPF 60
           MLRTG+ FDP+SASKL TASALSSFS+LDYAR VFDQIPQPN+Y WNTLIRAYASSSDP 
Sbjct: 53  MLRTGVLFDPYSASKLITASALSSFSSLDYARQVFDQIPQPNVYTWNTLIRAYASSSDPA 112

Query: 61  QSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHGMAI 107
           +S ++FLD+LD C + P+ +T+PF IKAASEL+A +VGR  HGMAI
Sbjct: 113 ESILVFLDMLDHCSECPDKYTYPFAIKAASELRALQVGRGFHGMAI 158

[Close]

BLAST of Cla009584 vs. NCBI nr
Match: gi|645216337|ref|XP_008220652.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Prunus mume])

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-37
Identity = 78/106 (73.58%), Postives = 91/106 (85.85%), Query Frame = 1


Query: 1   MLRTGLFFDPFSASKLFTASALSSFSTLDYARDVFDQIPQPNLYIWNTLIRAYASSSDPF 60
           MLRTG  FDP+SASKL TASALSSFS+LDYAR VFDQIPQPN+Y WNTLIRAYASSSDP 
Sbjct: 53  MLRTGALFDPYSASKLITASALSSFSSLDYARQVFDQIPQPNVYTWNTLIRAYASSSDPA 112

Query: 61  QSFVIFLDLLDKCEDLPNNFTFPFVIKAASELKASRVGRAVHGMAI 107
           +S +IFL++LD C + P+ +T+PF IKAASEL+A +VGR  HGMAI
Sbjct: 113 ESILIFLEMLDHCSECPDKYTYPFAIKAASELRALQVGRGFHGMAI 158

The following BLAST results are available for this feature:

BLAST of Cla009584 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP175_ARATH	9.4e-31	57.55	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
PP169_ARATH	1.6e-14	35.24	Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop...	[more]
PPR21_ARATH	4.7e-14	40.38	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
PP321_ARATH	8.8e-13	39.25	Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN...	[more]
PP367_ARATH	8.8e-13	36.94	Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cla009584 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0R9_CUCSA	1.1e-49	95.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G530130 PE=4 SV=1	[more]
W9RP57_9ROSA	8.5e-39	74.53	Uncharacterized protein OS=Morus notabilis GN=L484_022020 PE=4 SV=1	[more]
W9RP57_9ROSA	3.5e+00	29.00	Uncharacterized protein OS=Morus notabilis GN=L484_022020 PE=4 SV=1	[more]
V4SXW8_9ROSI	5.7e-35	69.81	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011151mg PE=4 SV=1	[more]
A0A067DRQ6_CITSI	5.7e-35	69.81	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035659mg PE=4 SV=1	[more]

BLAST of Cla009584 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115085\|ref\|XP_008457379.1\|	6.9e-50	96.23	PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic ...	[more]
gi\|449455158\|ref\|XP_004145320.1\|	1.5e-49	95.28	PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic ...	[more]
gi\|703130562\|ref\|XP_010104643.1\|	1.2e-38	74.53	hypothetical protein L484_022020 [Morus notabilis]	[more]
gi\|703130562\|ref\|XP_010104643.1\|	5.0e+00	29.00	hypothetical protein L484_022020 [Morus notabilis]	[more]
gi\|645216337\|ref\|XP_008220652.1\|	1.0e-37	73.58	PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031425	chloroplast RNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009584	Cla009584.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..106 score: 5.8
None	No IPR available	PANTHER	PTHR24015:SF558	SUBFAMILY NOT NAMED	coord: 1..106 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009584	Cucurbita pepo (Zucchini)	cpewmB350
Cla009584	Bottle gourd (USVL1VR-Ls)	lsiwmB391
Cla009584	Bottle gourd (USVL1VR-Ls)	lsiwmB399
Cla009584	Cucumber (Gy14) v2	cgybwmB013
Cla009584	Melon (DHL92) v3.6.1	medwmB254
Cla009584	Silver-seed gourd	carwmB0970
Cla009584	Cucumber (Chinese Long) v3	cucwmB016
Cla009584	Watermelon (97103) v2	wmwmbB126
Cla009584	Wax gourd	wgowmB655
Cla009584	Cucumber (Gy14) v1	cgywmB638
Cla009584	Cucurbita maxima (Rimu)	cmawmB051
Cla009584	Cucurbita maxima (Rimu)	cmawmB093
Cla009584	Cucurbita moschata (Rifu)	cmowmB043
Cla009584	Cucurbita moschata (Rifu)	cmowmB084
Cla009584	Melon (DHL92) v3.5.1	mewmB263
Cla009584	Watermelon (Charleston Gray)	wcgwmB225
Cla009584	Cucumber (Chinese Long) v2	cuwmB011