Cla009568 (gene) Watermelon (97103) v1

Overview
NameCla009568
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 16205277 .. 16206226 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCGACTCATGTGGAAGGGAGTCACAGTAGTACTAGTGATCATCATTCGAAGAGACCCCCGAAGGAAGGGCAATAATAATTTTTTTGAAGGGATCCCAAGTGCTTCAGGACTCCCTAGTGCTACTATACCGTTGGTATGTATGCTCTCTTCTCAAGTTCTCTTTGTTCTCTTCTTTACCAGGTAATTTATGTTTTCCCTTTTTTTATTATTATTATTTTTTTATTTTTACAGTCTCCCTTGAGTCCTTACCTTCAAGAGCTTGCGGAGCCAAACAGTGAAGAATCTTTAATGGGACCTTATAATTTGGATTCATCCATGGACAAGGTCGGTACTTCTACATTACCGGTAGTTGAAACAATTGAACCACCCTTACGAACTCGTGCTATTTTAGAGGACATTCGACGCGGCAAAGAGGAAGTAGGTATTGAGAGCGTTGCAGTTTTAACCTTTCCACTTGAAGATGTCAGTTGTTCTAATGCCCTCTTTATAGAGAAAACCATGCCCCCTCCTGGTCCGCTAAGAATTTCGAAACTGACCCAACGCGTCTGCAAAGAACCGAACGTTGGGAATCCCGAGGCTTCTCTATATTGCGGCGATGTAGTAGTTTCGAGTTTTTATCGACAAGCAGCGCTATCCCTATGGGAAAGCATTCGGGATAAGATTGTGCGTACTTCATTTGAACAGGTTCCATATCTCAGGTCGGAAGTCACGAAGGTATTCTCTGGTATTTCGAAGGTTCATGCAGAGAATTTGCCTCCGCTTCAGGAGTTTGTGGACAATTATCTTAAAAGGGTGGAAAATTTCAATGCGCTACAGTCCTCGTATTCCGCACAATTATCTTCAATTGACAAAGATCATCAATTGGGAGAGAAAACATCTCGCATGAAAGAAACCCTCACTTTGATCGACCAATTGCGAGAAGAGGATACAACCATTCAAGAGTGA

mRNA sequence

ATGATGCGACTCATGTGGAAGGGAGTCACAGTAGTACTAGTGATCATCATTCGAAGAGACCCCCGAAGGAAGGGCAATAATAATTTTTTTGAAGGGATCCCAAGTGCTTCAGGACTCCCTAGTGCTACTATACCGTTGTCTCCCTTGAGTCCTTACCTTCAAGAGCTTGCGGAGCCAAACAGTGAAGAATCTTTAATGGGACCTTATAATTTGGATTCATCCATGGACAAGGTCGGTACTTCTACATTACCGGTAGTTGAAACAATTGAACCACCCTTACGAACTCGTGCTATTTTAGAGGACATTCGACGCGGCAAAGAGGAAGTAGGTATTGAGAGCGTTGCAGTTTTAACCTTTCCACTTGAAGATGTCAGTTGTTCTAATGCCCTCTTTATAGAGAAAACCATGCCCCCTCCTGGTCCGCTAAGAATTTCGAAACTGACCCAACGCGTCTGCAAAGAACCGAACGTTGGGAATCCCGAGGCTTCTCTATATTGCGGCGATGTAGTAGTTTCGAGTTTTTATCGACAAGCAGCGCTATCCCTATGGGAAAGCATTCGGGATAAGATTGTGCGTACTTCATTTGAACAGGTTCCATATCTCAGGTCGGAAGTCACGAAGGTATTCTCTGGTATTTCGAAGGTTCATGCAGAGAATTTGCCTCCGCTTCAGGAGTTTGTGGACAATTATCTTAAAAGGGTGGAAAATTTCAATGCGCTACAGTCCTCGTATTCCGCACAATTATCTTCAATTGACAAAGATCATCAATTGGGAGAGAAAACATCTCGCATGAAAGAAACCCTCACTTTGATCGACCAATTGCGAGAAGAGGATACAACCATTCAAGAGTGA

Coding sequence (CDS)

ATGATGCGACTCATGTGGAAGGGAGTCACAGTAGTACTAGTGATCATCATTCGAAGAGACCCCCGAAGGAAGGGCAATAATAATTTTTTTGAAGGGATCCCAAGTGCTTCAGGACTCCCTAGTGCTACTATACCGTTGTCTCCCTTGAGTCCTTACCTTCAAGAGCTTGCGGAGCCAAACAGTGAAGAATCTTTAATGGGACCTTATAATTTGGATTCATCCATGGACAAGGTCGGTACTTCTACATTACCGGTAGTTGAAACAATTGAACCACCCTTACGAACTCGTGCTATTTTAGAGGACATTCGACGCGGCAAAGAGGAAGTAGGTATTGAGAGCGTTGCAGTTTTAACCTTTCCACTTGAAGATGTCAGTTGTTCTAATGCCCTCTTTATAGAGAAAACCATGCCCCCTCCTGGTCCGCTAAGAATTTCGAAACTGACCCAACGCGTCTGCAAAGAACCGAACGTTGGGAATCCCGAGGCTTCTCTATATTGCGGCGATGTAGTAGTTTCGAGTTTTTATCGACAAGCAGCGCTATCCCTATGGGAAAGCATTCGGGATAAGATTGTGCGTACTTCATTTGAACAGGTTCCATATCTCAGGTCGGAAGTCACGAAGGTATTCTCTGGTATTTCGAAGGTTCATGCAGAGAATTTGCCTCCGCTTCAGGAGTTTGTGGACAATTATCTTAAAAGGGTGGAAAATTTCAATGCGCTACAGTCCTCGTATTCCGCACAATTATCTTCAATTGACAAAGATCATCAATTGGGAGAGAAAACATCTCGCATGAAAGAAACCCTCACTTTGATCGACCAATTGCGAGAAGAGGATACAACCATTCAAGAGTGA

Protein sequence

MMRLMWKGVTVVLVIIIRRDPRRKGNNNFFEGIPSASGLPSATIPLSPLSPYLQELAEPNSEESLMGPYNLDSSMDKVGTSTLPVVETIEPPLRTRAILEDIRRGKEEVGIESVAVLTFPLEDVSCSNALFIEKTMPPPGPLRISKLTQRVCKEPNVGNPEASLYCGDVVVSSFYRQAALSLWESIRDKIVRTSFEQVPYLRSEVTKVFSGISKVHAENLPPLQEFVDNYLKRVENFNALQSSYSAQLSSIDKDHQLGEKTSRMKETLTLIDQLREEDTTIQE
Homology
[Close]
BLAST of Cla009568 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.7e-46
Identity = 106/232 (45.69%), Postives = 151/232 (65.09%), Query Frame = 1 

Query: 52  YLQELAEPNSEESLMGPYNLDSSMDKVGTSTLPVVETIEPPLRTRAILEDIRRGKEEVGI 111
           +   L EP+S+ESL GP+ +DS+ ++VGTS  PV +  E  L   A+ E+IRRGK  VG 
Sbjct: 384 WFARLIEPDSDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGG 443

Query: 112 ESVAVLTFPLEDVSCSNALFIEKTMPPPGPLRISKLTQRVCKEPNVGNPEASLYCGDVVV 171
           + +   +   ++  C  A F+ K      PL+ S+L      +  + NPE S + G+ VV
Sbjct: 444 KDLE--SHSSKEGVCPKA-FLPKVSSTHAPLKFSELPLGASNKQTMRNPEPSQWVGEKVV 503

Query: 172 SSFYRQAALSLWESIRDKIVRTSFEQVPYLRSEVTKVFSGISKVHAENLPPLQEFVDNYL 231
           S+F+++ AL +WE I+DKI++T FE +P LR E+  V SGI K+HA+ L  L+E++++YL
Sbjct: 504 SNFFQKTALCMWEDIQDKIMQTPFECIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYL 563

Query: 232 KRVENFNALQSSYSAQLSSIDKDHQLGEKTSRMKETLTLIDQLREEDTTIQE 284
           KRV+NFN +QSSYSAQL S DK  QL EKTS +KE LTL+ QLR +   IQE
Sbjct: 564 KRVDNFNDVQSSYSAQLLSTDKARQLNEKTSAIKEALTLVKQLRGDVKVIQE 612

[Close]
BLAST of Cla009568 vs. TrEMBL
Match: A5C829_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015746 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-06
Identity = 31/92 (33.70%), Postives = 61/92 (66.30%), Query Frame = 1 

Query: 160 PEASLYCGDV--VVSSFYRQAALSLWESIRDKIVRTSFEQVPYLRSEVTKVFSGISKVHA 219
           P  S +  DV  ++ +  RQAAL + E I++ I++TS E +P LR ++ ++F+ I+K+  
Sbjct: 425 PSTSTHTFDVKQIILNAQRQAALMIGEDIKEMIIKTSNECLPLLRGKIDELFNAITKIGV 484

Query: 220 ENLPPLQEFVDNYLKRVENFNALQSSYSAQLS 250
           + L PL+  ++ Y+K V++ +A+Q ++S ++S
Sbjct: 485 D-LSPLKSQIEKYMKSVDHLDAVQRTHSMKIS 515

[Close]
BLAST of Cla009568 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 194.5 bits (493), Expect = 2.5e-46
Identity = 106/232 (45.69%), Postives = 151/232 (65.09%), Query Frame = 1 

Query: 52  YLQELAEPNSEESLMGPYNLDSSMDKVGTSTLPVVETIEPPLRTRAILEDIRRGKEEVGI 111
           +   L EP+S+ESL GP+ +DS+ ++VGTS  PV +  E  L   A+ E+IRRGK  VG 
Sbjct: 384 WFARLIEPDSDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGG 443

Query: 112 ESVAVLTFPLEDVSCSNALFIEKTMPPPGPLRISKLTQRVCKEPNVGNPEASLYCGDVVV 171
           + +   +   ++  C  A F+ K      PL+ S+L      +  + NPE S + G+ VV
Sbjct: 444 KDLE--SHSSKEGVCPKA-FLPKVSSTHAPLKFSELPLGASNKQTMRNPEPSQWVGEKVV 503

Query: 172 SSFYRQAALSLWESIRDKIVRTSFEQVPYLRSEVTKVFSGISKVHAENLPPLQEFVDNYL 231
           S+F+++ AL +WE I+DKI++T FE +P LR E+  V SGI K+HA+ L  L+E++++YL
Sbjct: 504 SNFFQKTALCMWEDIQDKIMQTPFECIPRLRPEIATVLSGIEKIHADGLTSLEEYLNSYL 563

Query: 232 KRVENFNALQSSYSAQLSSIDKDHQLGEKTSRMKETLTLIDQLREEDTTIQE 284
           KRV+NFN +QSSYSAQL S DK  QL EKTS +KE LTL+ QLR +   IQE
Sbjct: 564 KRVDNFNDVQSSYSAQLLSTDKARQLNEKTSAIKEALTLVKQLRGDVKVIQE 612

[Close]
BLAST of Cla009568 vs. NCBI nr
Match: gi|147863477|emb|CAN84052.1| (hypothetical protein VITISV_015746 [Vitis vinifera])

HSP 1 Score: 60.8 bits (146), Expect = 4.3e-06
Identity = 31/92 (33.70%), Postives = 61/92 (66.30%), Query Frame = 1 

Query: 160 PEASLYCGDV--VVSSFYRQAALSLWESIRDKIVRTSFEQVPYLRSEVTKVFSGISKVHA 219
           P  S +  DV  ++ +  RQAAL + E I++ I++TS E +P LR ++ ++F+ I+K+  
Sbjct: 425 PSTSTHTFDVKQIILNAQRQAALMIGEDIKEMIIKTSNECLPLLRGKIDELFNAITKIGV 484

Query: 220 ENLPPLQEFVDNYLKRVENFNALQSSYSAQLS 250
           + L PL+  ++ Y+K V++ +A+Q ++S ++S
Sbjct: 485 D-LSPLKSQIEKYMKSVDHLDAVQRTHSMKIS 515

The following BLAST results are available for this feature:
BLAST of Cla009568 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB9_CUCME1.7e-4645.69Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5C829_VITVI3.0e-0633.70Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015746 PE=4 SV=1[more]
BLAST of Cla009568 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136292|gb|ADN34118.1|2.5e-4645.69hypothetical protein [Cucumis melo subsp. melo][more]
gi|147863477|emb|CAN84052.1|4.3e-0633.70hypothetical protein VITISV_015746 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009568Cla009568.1mRNA