Cla009567 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009567
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr3 : 16204660 .. 16205118 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAATGGGAAGTCTTATAGCCTTGGTATTCCAGTCCTAGCTAATATATATCATGGTCTAGGGCTGATTACCGAAGCTACCAACCCGATTGAACGTGTGGACTTTCACTTTCCTATGCATTATGTCCACGGCTGGCTGGCCCATTACTTTAACACGCATTACCTCGTTCCTGTGGATGTGCGGGGTCCCAAGATGGCCAATTTTTCTGGAGAAGGTGGCTCAATCTATTTCGGGGAATATGAAGCACGAGAGTTGATCCATAGAGGTGCAAACATCCAATGGCATGTAACTATCCAGGGTCGAAATAGGCATGAGCGCTTGGTTGATGGTAATGACTTATCGTCCCAACATTCTTACCAAATTTCCAGCATGCGATCCGGTTATGTATCGTCCCGGTGTGGAGACACCTTGATACTAGAATCATACAGTCCTTATCGATTTGGGCGGCAGTTTTGA

mRNA sequence

ATGGCTAATGGGAAGTCTTATAGCCTTGGTATTCCAGTCCTAGCTAATATATATCATGGTCTAGGGCTGATTACCGAAGCTACCAACCCGATTGAACGTGTGGACTTTCACTTTCCTATGCATTATGTCCACGGCTGGCTGGCCCATTACTTTAACACGCATTACCTCGTTCCTGTGGATGTGCGGGGTCCCAAGATGGCCAATTTTTCTGGAGAAGGTGGCTCAATCTATTTCGGGGAATATGAAGCACGAGAGTTGATCCATAGAGGTGCAAACATCCAATGGCATGTAACTATCCAGGGTCGAAATAGGCATGAGCGCTTGGTTGATGGTAATGACTTATCGTCCCAACATTCTTACCAAATTTCCAGCATGCGATCCGGTTATGTATCGTCCCGGTGTGGAGACACCTTGATACTAGAATCATACAGTCCTTATCGATTTGGGCGGCAGTTTTGA

Coding sequence (CDS)

ATGGCTAATGGGAAGTCTTATAGCCTTGGTATTCCAGTCCTAGCTAATATATATCATGGTCTAGGGCTGATTACCGAAGCTACCAACCCGATTGAACGTGTGGACTTTCACTTTCCTATGCATTATGTCCACGGCTGGCTGGCCCATTACTTTAACACGCATTACCTCGTTCCTGTGGATGTGCGGGGTCCCAAGATGGCCAATTTTTCTGGAGAAGGTGGCTCAATCTATTTCGGGGAATATGAAGCACGAGAGTTGATCCATAGAGGTGCAAACATCCAATGGCATGTAACTATCCAGGGTCGAAATAGGCATGAGCGCTTGGTTGATGGTAATGACTTATCGTCCCAACATTCTTACCAAATTTCCAGCATGCGATCCGGTTATGTATCGTCCCGGTGTGGAGACACCTTGATACTAGAATCATACAGTCCTTATCGATTTGGGCGGCAGTTTTGA

Protein sequence

MANGKSYSLGIPVLANIYHGLGLITEATNPIERVDFHFPMHYVHGWLAHYFNTHYLVPVDVRGPKMANFSGEGGSIYFGEYEARELIHRGANIQWHVTIQGRNRHERLVDGNDLSSQHSYQISSMRSGYVSSRCGDTLILESYSPYRFGRQF

Homology

[Close]

BLAST of Cla009567 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.4e-57
Identity = 107/152 (70.39%), Postives = 121/152 (79.61%), Query Frame = 1


Query: 1   MANGKSYSLGIPVLANIYHGLGLITEATNPIERVDFHFPMHYVHGWLAHYFNTHYLVPVD 60
           MA G  YSL + VLANIYHGLGLIT+A+NPI  +DFHFPMHYVHGWLAHYF THY +P +
Sbjct: 87  MAAGTIYSLAVLVLANIYHGLGLITKASNPIRCMDFHFPMHYVHGWLAHYFGTHYPLPTE 146

Query: 61  VRGPKMANFSGEGGSIYFGEYEARELIHRGANIQWHVTIQGRNRHERLVDGNDLSSQHSY 120
           VRGPKM NFSGEGGSIYFGEYEARELIH GA IQWH  +Q R++HER+VD +D S     
Sbjct: 147 VRGPKMTNFSGEGGSIYFGEYEARELIHNGARIQWHANLQNRSKHERMVDTHDSSFLQMS 206

Query: 121 QISSMRSGYVSSRCGDTLILESYSPYRFGRQF 153
              SMRS Y+SSRC +T I+ SYSPYR GRQF
Sbjct: 207 YFVSMRSCYLSSRCENTWIITSYSPYRLGRQF 238

[Close]

BLAST of Cla009567 vs. TrEMBL
Match: A0A0K9QLA5_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_172530 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-28
Identity = 69/152 (45.39%), Postives = 92/152 (60.53%), Query Frame = 1


Query: 1   MANGKSYSLGIPVLANIYHGLGLITEATNPIERVDFHFPMHYVHGWLAHYFNTHYLVPVD 60
           MA G +YSLG+PVLA+IYHGL +I+ ++ P       FP HYV+GWL HYF+TH+ V   
Sbjct: 1   MARGDTYSLGVPVLASIYHGLNVISRSSRPSYSGSC-FPTHYVYGWLGHYFSTHHAVEPP 60

Query: 61  VRGPKMANFSGEGGSIYFGEYEARELIHRGANIQWHVTIQGRNRHERLVDGNDLSSQHSY 120
             GP M  FSG   S  F + +AR+LIH G   +   TI  +N++E L D   L      
Sbjct: 61  PPGPLMVLFSGAKSSKCFTDVQARDLIHGGEQAKVGCTILNKNKNELLFDDGKLELLQFS 120

Query: 121 QISSMRSGYVSSRCGDTLILESYSPYRFGRQF 153
            + S+RS Y+  RC D+  +E Y+PYRF RQF
Sbjct: 121 YLVSLRSCYLPLRCVDSFYIEPYAPYRFARQF 151

[Close]

BLAST of Cla009567 vs. TrEMBL
Match: M1BMX6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018974 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 9.1e-26
Identity = 62/152 (40.79%), Postives = 90/152 (59.21%), Query Frame = 1


Query: 1   MANGKSYSLGIPVLANIYHGLGLITEATNPIERVDFHFPMHYVHGWLAHYFNTHYLVPVD 60
           MA+GK  SL +PVLA+IYHGL  I+ ++  ++ +   FP+HYV+GWLA+Y  THY +   
Sbjct: 222 MASGKRVSLAVPVLASIYHGLNKISNSSQ-LDHIRVCFPIHYVYGWLAYYLKTHYPLTSG 281

Query: 61  VRGPKMANFSGEGGSIYFGEYEARELIHRGANIQWHVTIQGRNRHERLVDGNDLSSQHSY 120
              P+M  +SGEG + YF + EAR+ +H G +I W+ TI  R      +D          
Sbjct: 282 PSLPRMVVYSGEGAAKYFDKDEARKRVHWGESIVWNATILSRPHPTYYIDDGKAPELELA 341

Query: 121 QISSMRSGYVSSRCGDTLILESYSPYRFGRQF 153
              S+R  Y+  R G + ++E YSP+RF RQF
Sbjct: 342 YFMSLRFNYLPLRRGGSFVIEPYSPHRFSRQF 372

[Close]

BLAST of Cla009567 vs. TrEMBL
Match: M1BMX6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018974 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-21
Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 1


Query: 11  IPVLANIYHGLGLITEATNPIERVDFHFPMHYVHGWLAHYFNTHYLVPVDVRGPKMANFS 70
           +PVLA+IYHGL  I+ ++  ++ +   FP+HYV+GWLA+Y  THY +      P+M  +S
Sbjct: 472 VPVLASIYHGLNKISNSSQ-LDHIRVCFPIHYVYGWLAYYLKTHYPLTSGPSLPRMVVYS 531

Query: 71  GEGGSIYFGEYEARELIHRGANIQWHVTIQGRNRHERLVDGNDLSSQHSYQISSMRSGYV 130
           GEG + YF + EAR+ +HRG +I W+ T+  R      +D             S+R  Y+
Sbjct: 532 GEGAAKYFDKDEARKRVHRGESIVWNATMLSRPHPTYYIDDGKAPELELAYFMSLRFNYL 591

Query: 131 SSRCGDTLILESYSPYRFGRQF 153
             R G + ++E YSP+RF   F
Sbjct: 592 PLRRGGSFVIEPYSPHRFSCPF 612

HSP 2 Score: 121.3 bits (303), Expect = 1.0e-24
Identity = 60/152 (39.47%), Postives = 89/152 (58.55%), Query Frame = 1


Query: 1   MANGKSYSLGIPVLANIYHGLGLITEATNPIERVDFHFPMHYVHGWLAHYFNTHYLVPVD 60
           M NGK  SL +PVLA+IYHGL  I+ ++  ++ +   FP+HYV+GWLA+Y  THY +   
Sbjct: 341 MVNGKRVSLAVPVLASIYHGLNKISNSSQ-LDHIRVCFPIHYVYGWLAYYLKTHYPLTSG 400

Query: 61  VRGPKMANFSGEGGSIYFGEYEARELIHRGANIQWHVTIQGRNRHERLVDGNDLSSQHSY 120
              P+M  +SGEG + YF + EAR+ +HRG +I W+ T+  R      +D          
Sbjct: 401 PYLPRMVVYSGEGAAKYFDKDEARKRLHRGESIVWNATMLSRPHPTYYIDDGKAPELELD 460

Query: 121 QISSMRSGYVSSRCGDTLILESYSPYRFGRQF 153
            + S+   Y+  R   + ++E YSP+RF RQF
Sbjct: 461 YLISLHFNYLPLRRRGSFVIEPYSPHRFSRQF 491

[Close]

BLAST of Cla009567 vs. TrEMBL
Match: A0A0J8C3J6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g143350 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.5e-24
Identity = 65/152 (42.76%), Postives = 87/152 (57.24%), Query Frame = 1


Query: 1   MANGKSYSLGIPVLANIYHGLGLITEATNPIERVDFHFPMHYVHGWLAHYFNTHYLVPVD 60
           MA G ++SL +PVL++IY GL  I  A        F FP HY++GWLA+YFNTH+     
Sbjct: 332 MACGHTFSLAVPVLSSIYRGLNAIASAPKLAYSKTF-FPAHYLYGWLAYYFNTHHDADPV 391

Query: 61  VRGPKMANFSGEGGSIYFGEYEARELIHRGANIQWHVTIQGRNRHERLVDGNDLSSQHSY 120
             GP M  +SG  GS +F   +A  LIH GA+I    T+  +N+H+ L D   L      
Sbjct: 392 PPGPWMVIYSGAQGSKFFNGDDAHSLIHAGASINMGCTMLNKNKHDLLHDDGQLDPVKFS 451

Query: 121 QISSMRSGYVSSRCGDTLILESYSPYRFGRQF 153
            + S+RSGY+  R  D   +E YSP+RF RQF
Sbjct: 452 FMVSLRSGYLVLRSCDKFHVEPYSPHRFARQF 482

[Close]

BLAST of Cla009567 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 229.2 bits (583), Expect = 4.9e-57
Identity = 107/152 (70.39%), Postives = 121/152 (79.61%), Query Frame = 1


Query: 1   MANGKSYSLGIPVLANIYHGLGLITEATNPIERVDFHFPMHYVHGWLAHYFNTHYLVPVD 60
           MA G  YSL + VLANIYHGLGLIT+A+NPI  +DFHFPMHYVHGWLAHYF THY +P +
Sbjct: 87  MAAGTIYSLAVLVLANIYHGLGLITKASNPIRCMDFHFPMHYVHGWLAHYFGTHYPLPTE 146

Query: 61  VRGPKMANFSGEGGSIYFGEYEARELIHRGANIQWHVTIQGRNRHERLVDGNDLSSQHSY 120
           VRGPKM NFSGEGGSIYFGEYEARELIH GA IQWH  +Q R++HER+VD +D S     
Sbjct: 147 VRGPKMTNFSGEGGSIYFGEYEARELIHNGARIQWHANLQNRSKHERMVDTHDSSFLQMS 206

Query: 121 QISSMRSGYVSSRCGDTLILESYSPYRFGRQF 153
              SMRS Y+SSRC +T I+ SYSPYR GRQF
Sbjct: 207 YFVSMRSCYLSSRCENTWIITSYSPYRLGRQF 238

[Close]

BLAST of Cla009567 vs. NCBI nr
Match: gi|778665095|ref|XP_011648484.1| (PREDICTED: uncharacterized protein LOC105434487 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 4.0e-35
Identity = 72/152 (47.37%), Postives = 101/152 (66.45%), Query Frame = 1


Query: 1   MANGKSYSLGIPVLANIYHGLGLITEATNPIERVDFHFPMHYVHGWLAHYFNTHYLVPVD 60
           MA G ++SL +PVLANIY GL  + ++T+ +   +  FP+HYVHGWLA YFNTHY  P  
Sbjct: 197 MAEGYTFSLAVPVLANIYSGLRQVHDSTSSLGYSNACFPLHYVHGWLALYFNTHYKAPRS 256

Query: 61  VRGPKMANFSGEGGSIYFGEYEARELIHRGANIQWHVTIQGRNRHERLVDGNDLSSQHSY 120
           +RGP+M  FSGEGG+ Y+   EAR  IH+G  + WH  +  +N+ E L D  +L S ++ 
Sbjct: 257 LRGPRMVEFSGEGGAKYYTNLEARTHIHKGKYVSWHACLPTKNKDELLTDDGELISWNAS 316

Query: 121 QISSMRSGYVSSRCGDTLILESYSPYRFGRQF 153
              S+ S ++SS+CG + ++E YSP RF RQF
Sbjct: 317 FFISIHSCFLSSQCGSSTVIEPYSPCRFSRQF 348

[Close]

BLAST of Cla009567 vs. NCBI nr
Match: gi|848853669|ref|XP_012844633.1| (PREDICTED: uncharacterized protein LOC105964676 [Erythranthe guttata])

HSP 1 Score: 136.3 bits (342), Expect = 4.3e-29
Identity = 69/152 (45.39%), Postives = 93/152 (61.18%), Query Frame = 1


Query: 1   MANGKSYSLGIPVLANIYHGLGLITEATNPIERVDFHFPMHYVHGWLAHYFNTHYLVPVD 60
           MA+G+   L +PVLA+IY GL  I+ +  P  RV   FP+H+V+GWLAHYF THY V   
Sbjct: 345 MASGRKVGLAVPVLASIYKGLNKISNSPRPT-RVSSPFPIHFVYGWLAHYFKTHYPVWQG 404

Query: 61  VRGPKMANFSGEGGSIYFGEYEARELIHRGANIQWHVTIQGRNRHERLVDGNDLSSQHSY 120
           VRGPKM  +SGEGG+ Y+   EAR+ IH+G    W  T+  +++    VD  +       
Sbjct: 405 VRGPKMTTYSGEGGAKYYDSKEARKRIHKGDFASWTCTMITKSKDFLYVDNANGDELEQN 464

Query: 121 QISSMRSGYVSSRCGDTLILESYSPYRFGRQF 153
              +MRS Y+  R G+  I+E YSP+RF RQF
Sbjct: 465 YFIAMRSNYLPLRRGEEFIIEPYSPHRFSRQF 495

[Close]

BLAST of Cla009567 vs. NCBI nr
Match: gi|902167393|gb|KNA07366.1| (hypothetical protein SOVF_172530, partial [Spinacia oleracea])

HSP 1 Score: 133.7 bits (335), Expect = 2.8e-28
Identity = 69/152 (45.39%), Postives = 92/152 (60.53%), Query Frame = 1


Query: 1   MANGKSYSLGIPVLANIYHGLGLITEATNPIERVDFHFPMHYVHGWLAHYFNTHYLVPVD 60
           MA G +YSLG+PVLA+IYHGL +I+ ++ P       FP HYV+GWL HYF+TH+ V   
Sbjct: 1   MARGDTYSLGVPVLASIYHGLNVISRSSRPSYSGSC-FPTHYVYGWLGHYFSTHHAVEPP 60

Query: 61  VRGPKMANFSGEGGSIYFGEYEARELIHRGANIQWHVTIQGRNRHERLVDGNDLSSQHSY 120
             GP M  FSG   S  F + +AR+LIH G   +   TI  +N++E L D   L      
Sbjct: 61  PPGPLMVLFSGAKSSKCFTDVQARDLIHGGEQAKVGCTILNKNKNELLFDDGKLELLQFS 120

Query: 121 QISSMRSGYVSSRCGDTLILESYSPYRFGRQF 153
            + S+RS Y+  RC D+  +E Y+PYRF RQF
Sbjct: 121 YLVSLRSCYLPLRCVDSFYIEPYAPYRFARQF 151

[Close]

BLAST of Cla009567 vs. NCBI nr
Match: gi|698477662|ref|XP_009786038.1| (PREDICTED: uncharacterized protein LOC104234204 [Nicotiana sylvestris])

HSP 1 Score: 129.4 bits (324), Expect = 5.3e-27
Identity = 66/152 (43.42%), Postives = 94/152 (61.84%), Query Frame = 1


Query: 1   MANGKSYSLGIPVLANIYHGLGLITEATNPIERVDFHFPMHYVHGWLAHYFNTHYLVPVD 60
           MA G+  SL +PVLA+IYHGL  I+ ++  +++V   FP+HYV+GWLAHYF THY +   
Sbjct: 335 MAGGRQISLIVPVLASIYHGLNKISRSSQ-LDQVKVSFPIHYVYGWLAHYFKTHYPLTNV 394

Query: 61  VRGPKMANFSGEGGSIYFGEYEARELIHRGANIQWHVTIQGRNRHERLVDGNDLSSQHSY 120
           +  P M  +SGEG + YF E + R+ IH G +I W  T+   +R    VD +      S 
Sbjct: 395 LSVPLMVAYSGEGVARYFDEKDGRKRIHNGEDIVWAPTMLTNSRPYYYVDNDAPQELESN 454

Query: 121 QISSMRSGYVSSRCGDTLILESYSPYRFGRQF 153
              S+R  Y+  R G++ I++ YSP+RFGRQF
Sbjct: 455 YFMSLRFNYLPLRYGNSFIIKPYSPHRFGRQF 485

The following BLAST results are available for this feature:

BLAST of Cla009567 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB9_CUCME	3.4e-57	70.39	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0K9QLA5_SPIOL	2.0e-28	45.39	Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_172530 PE=4 SV=1	[more]
M1BMX6_SOLTU	9.1e-26	40.79	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018974 PE=4 SV=1	[more]
M1BMX6_SOLTU	1.4e-21	38.03	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018974 PE=4 SV=1	[more]
A0A0J8C3J6_BETVU	6.5e-24	42.76	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g143350 PE=4 S...	[more]

BLAST of Cla009567 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136292\|gb\|ADN34118.1\|	4.9e-57	70.39	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|778665095\|ref\|XP_011648484.1\|	4.0e-35	47.37	PREDICTED: uncharacterized protein LOC105434487 [Cucumis sativus]	[more]
gi\|848853669\|ref\|XP_012844633.1\|	4.3e-29	45.39	PREDICTED: uncharacterized protein LOC105964676 [Erythranthe guttata]	[more]
gi\|902167393\|gb\|KNA07366.1\|	2.8e-28	45.39	hypothetical protein SOVF_172530, partial [Spinacia oleracea]	[more]
gi\|698477662\|ref\|XP_009786038.1\|	5.3e-27	43.42	PREDICTED: uncharacterized protein LOC104234204 [Nicotiana sylvestris]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009567	Cla009567.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009567	Cucurbita maxima (Rimu)	cmawmB051
Cla009567	Cucurbita maxima (Rimu)	cmawmB093
Cla009567	Cucurbita moschata (Rifu)	cmowmB043
Cla009567	Cucurbita moschata (Rifu)	cmowmB084
Cla009567	Melon (DHL92) v3.5.1	mewmB263
Cla009567	Watermelon (Charleston Gray)	wcgwmB225
Cla009567	Cucumber (Chinese Long) v2	cuwmB011
Cla009567	Cucurbita pepo (Zucchini)	cpewmB006
Cla009567	Cucurbita pepo (Zucchini)	cpewmB350
Cla009567	Bottle gourd (USVL1VR-Ls)	lsiwmB391
Cla009567	Cucumber (Gy14) v2	cgybwmB013
Cla009567	Melon (DHL92) v3.6.1	medwmB254
Cla009567	Silver-seed gourd	carwmB0531
Cla009567	Silver-seed gourd	carwmB0970
Cla009567	Cucumber (Chinese Long) v3	cucwmB016
Cla009567	Watermelon (97103) v2	wmwmbB126
Cla009567	Wax gourd	wgowmB655
Cla009567	Cucumber (Gy14) v1	cgywmB638