Cla009566 (gene) Watermelon (97103) v1

Overview
NameCla009566
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 16202749 .. 16203969 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGCGACAGTCGGGAGAGAGCGACAGTCTAAGCAAGAGAGCGAGAGTTTGAGCGAGACAACGAGAGAGCGGGAGTTGAGCGAGGCAGCAAGAGTTGGGTGAGAGTTTATTTTTTTTTGTGTTATTATCATTATTTTTGGCCCTAATCACTTACTCTCGTTGTTTGCAGGCTAACTTGCATCCCAACAGAACAACTCTCTTCTTTTTTTTTTTTTTGGGGGCTCACGAACCTTCAAATTGTACTTGCCATCGGTTGATTTAACGTCTCCACTACAGACTCGGTGCTTGACGGCTTAAATTATTAATTTTTCATCTCTCTATTTCTTTGGTGCATGAAGATTTGAGTTACTGACTCACCGCCTCTCTGCTGCCTTGGCGCATGAAGATTTAAATTGTTGATCCGTCGTCTCCCTACAGGTAAAGACGACCCCAGAGCTCTGAACTATTGACTTAGGGATGAGCCCGGGAAGATCTTCGCGACTATGGCTCGCCGTCACCCTACAAGTAGGGATGACCATAGGTCTCTGAACTATTGAATTAGGGATGAGCCCGGGAAGATCTTAGCGATTTGAAGGTCTTAGCGACTGAGGTTCGCCGTCACCCTACAGGTAGGGATGACCCTGGGTCTCTGAACTATTGAATTAGGGATGAGCCCGGGAAGATCTTAGCGATTTGAAGGTCTTAGCGACTGAAGTTCGCCGTCACCCTACAGGTAGGGATGACCCTGGGTCTCTTAACTATTGAATTAGGAATGAGTCTGGGAAGATCTTAGCGACCTTCATCTTGGCCTTAGGACTGGGCAGTCGCCTAGGGGTGGTGACGTTGCGATGTCAATATCAGGGGCTGACAAATGTTTTCTTTTCTTGGAATAAGTTCACGTCTGCTTCACCATTTAAAACTTTCATATCTCTATTTCTTCTAGATCGGGCAATTAAGACCTAACTTCTAATAGTGACGTTTTCCTATAGGACAATGGTTTACTTTGCGAAGCATGTCTCGTCTGGAAAAACACAGCTCGTGATCCTTGCAGAGAGGCACCAGGGGGAAAAGGTGCCTTTTCATCAGGGAGAAAAGGTGTGGATCCTAAGGTCGTCGATTCATGACACAACACCTTCCTTGGATCGATTGTTAACTCTCGGGCGACGCATGCTGGAAGGCGAGACCCGTTGGAGCACCATTGTGAAAGTCCCTGGTGAATTCACTTTTATCGACTGCTAA

mRNA sequence

ATGAGAGCGACAGTCGGGAGAGAGCGACAGTCTAAGCAAGAGAGCGAGAGTTTGAGCGAGACAACGAGAGAGCGGGAGTTGAGCGAGGCAGCAAGAGTTGGGACAATGGTTTACTTTGCGAAGCATGTCTCGTCTGGAAAAACACAGCTCGTGATCCTTGCAGAGAGGCACCAGGGGGAAAAGGTGCCTTTTCATCAGGGAGAAAAGGTGTGGATCCTAAGGTCGTCGATTCATGACACAACACCTTCCTTGGATCGATTGTTAACTCTCGGGCGACGCATGCTGGAAGGCGAGACCCGTTGGAGCACCATTGTGAAAGTCCCTGGTGAATTCACTTTTATCGACTGCTAA

Coding sequence (CDS)

ATGAGAGCGACAGTCGGGAGAGAGCGACAGTCTAAGCAAGAGAGCGAGAGTTTGAGCGAGACAACGAGAGAGCGGGAGTTGAGCGAGGCAGCAAGAGTTGGGACAATGGTTTACTTTGCGAAGCATGTCTCGTCTGGAAAAACACAGCTCGTGATCCTTGCAGAGAGGCACCAGGGGGAAAAGGTGCCTTTTCATCAGGGAGAAAAGGTGTGGATCCTAAGGTCGTCGATTCATGACACAACACCTTCCTTGGATCGATTGTTAACTCTCGGGCGACGCATGCTGGAAGGCGAGACCCGTTGGAGCACCATTGTGAAAGTCCCTGGTGAATTCACTTTTATCGACTGCTAA

Protein sequence

MRATVGRERQSKQESESLSETTRERELSEAARVGTMVYFAKHVSSGKTQLVILAERHQGEKVPFHQGEKVWILRSSIHDTTPSLDRLLTLGRRMLEGETRWSTIVKVPGEFTFIDC
Homology
[Close]
BLAST of Cla009566 vs. NCBI nr
Match: gi|659082744|ref|XP_008442010.1| (PREDICTED: uncharacterized protein LOC103486002 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 29/56 (51.79%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 61  KVPFHQGEKVWILRSSIHDTTPSLDRLLTLGRRMLEGETRWSTIVKVPGEFTFIDC 117
           ++P  +G+  W+L+SSIH+  P+ DR+LTLG+ ++EG+TRW T+ KVP EF F DC
Sbjct: 67  EIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDC 122

The following BLAST results are available for this feature:
BLAST of Cla009566 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659082744|ref|XP_008442010.1|1.2e-1051.79PREDICTED: uncharacterized protein LOC103486002 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009566Cla009566.1mRNA