Cla009537 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009537
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Dicer-like protein (AHRD V1 ***- B9HHX6_POPTR); contains Interpro domain(s) IPR006935 Restriction endonuclease, type I, R subunit/Type III, Res subunit
Location	Chr3 : 15512429 .. 15515891 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGAATATGGAAATCGAGAACGAACAGCTAGTGGCTGATCCTTTACCATTCGCCAGAAGGTTGTGTTGTGTGCAATGTTTTCTTTTTGGCTCCATTTTGCTTAACTTTCCCTTTATCTTATTAGGAGCTTTTTAAGGGTTTTTTTCGTTTTTGTTTGTTGGATTGTTGAAGTTAGCATTGTTCCTTGTATCTTATGATGGGTGATTGTTTCAGTTATCAGTTGGAAGGATTGGAAAAAGCACTTAAGCAGAACACGGTAGTGTTTTTAGAAACTGGCTCTGGGAAGACTTTGATCGCCATCATGCTTTTGCGCAGCTTTGCTCACCAACTACGCAAACCTTCACCCTTCATTGCTGTTTTCTTAGTTCCACAAGTTGTTTTGGTCACTCAAGTATGCACAGATTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTATTTTTACATGGGAAACATAAACAAGAACTTTGATTGATAATCAAAGAGATCAGAATTTGGCATCGTCAACTGGGGAACGAAAGAAATCAACCAAATTTTGGTTTACACAATGCATGAGTACGTACATGGGAGCTTATTAAGCACATTTCAACAAGTGGATATATATTGTTGAAGATCAAAAATGACAAAGATCTCTATGCTTATCACACAAAATCCTGCTATTTCTCTCCAACCAAATGGATTGACCTGTTAGGGTTTTGTCGAGCTAGAGTGACATAATTACATCTTTAGGAAACATCAAGTGAAATTGAACCCATTCCAACGGAAGCTTTAGCAGTACAGATTTTTGTTGCCCAACTGCAATTGAATAAAAGGTGGTCTAGAATATTTTGTTCTCTCTTCTTCGCAGATGTAGTTTTTTCTATAATCAGATTCTACTTCTAACATATAGTTATCTTGGATCTAGGACCATTTGGCCTGGTGAAATTTAAAATCATATTCTTCTTATTGGATTAGGGAGGTTTCTCAAGTTTATTGAAAGAATGAAGAAAATGTCTTTTGATTGTGAATTAAACGTTGCTAATAATCCAGTGGTTCTTTCTGTTAATTAGAGATACCAATTTTGAACATGATTAATTATTTTTTCTACACAAAGGTAGAGCTTCTGGAAGGATTATAGGGAACACCAAGCGAACATTATTATTAATGTTTTAGTTTGGAGATTCATTTTCCCACCACTCACAGTTTCGTCCATTCTTTTTCGTAATTTAGCAAGCTGAAGCTCTGAAGATGCATACTGACTTGAGCGTTGGTTTGTATTATGGAGATATGGGGGTAGACTTTTGGGATGGTGCAATTTGGAAGCGAGAAATAGAAAAGCATGAGGTAATGCGTATCTTCTCATGTGGATATTGCTCATTTTATTTTTAATATTGACTGTTCATTCATTATTTGTTGACATATACTCCATTTTTTTATAAATTATTTTTTTCCTTTTACTGAAATCTAGACTGCTTGCATAATGGCTATTTCATGTTACTGTCATCTTCCATTTATATAATATGCCATCTAAATTCTTGTCTACTCTTTTCATGCTACTGCTACCATTTTTTTCTGACATATTTTTGACATATTAGGTGCTTGTGATGACCCCTGCAATTTTGCTAAGTGGCTTGAGGCATAGCTTCTTTCATCTAAGCATGATAAAGGTCCTAATAGTAGATGAATGTCATCATGCCAGAGGCAAACACCCCTATGCTTGCATTATGACGGTAATTTTTATTAGACTGTCTAATTTGGAGGATACTTGGGCAAAACCGATATACGTTTTTTTATTATTGGAAATATTTTCTTATTGTACTTTTTCTTTCCTATCTTCAACCACCAACTTCTTCACCTTTTTACGTATAGCCACATGTAAAGAAGCACCTATATGGATATGAGAACAAGATATAGATACGACCCAGACACATTGATACATCATTTTTCAAAAATCTAGAAAACATGGACATGGCAAGGACACAGCTATTAAAATGTACGTGTTTAAAAATATATAAATTTTTTGTAGAATAAGGAAATTCAAAGTTAGTGAGTTTATGCATGTCTATGCTTAAAAGATGAGTTTGATGTATTTCGTTCTCAAAATTTATTCAAAGTCAAGTTTTTGATGTATGTTTAACAAATGTTGGACCTATATAGACTTTGCACCACAAGTGTCTTAACACATTCATTGTGTTAACAAGTGTCGAATACATGTCCAACAAGTGTTGGAGTGTCCAAGTGTCCCATAGTGTTGGTCATAGATACATTAGTTGAGCTAAAGTTTTTGTGCTTCTTAGGCCACTAGAAAGACAACATGCCAATTTTATAGAAATGTATGTTAGTTTAACCGATTATACAATTTAGAGGAATTATAATATGCACCAGCACTATACTTTTTGACATAAATCATATGCTTGTATATTATAGTAGTTCAGAGGAGATGCAAATTTTGTAAATATATAAATACAAAGATATAGAAGGATAAGGAATCCCTTCTTATTGAAAGAAATTTACAGAAAATATCCTCTCTAGAATATGAAACAAAGAAAATATGTTTAAAAAGTTCATGCTTTAGAGCCATAATAATTAAATAATTCAACTTTATACCAAACATAAAAGATATTCTTACATTTATGTCTCGCACGGCCATATGTCCCAACAAATGTAAAGCTATCTTTTTTCCCACCCTACTAATTGAACTATCCAAATCCGATTGTTGGTTAAACTCGAGATTTTGCAAGGCCCCAAGATACCTCAAAACCTTGTTTCTTGAAGAAGCAAGGGAACTTTGAGAAATCCTGAGGTCGGACGAGGTGTGAGCCTCAACTTTTTGAAAATGCATTAATAAAAATCATAAAAATGAGTAATAGGTACTACTATACTTAAATGATTACCCAAAATACAACAAAATTGACATCTATCAATTATTGATTTGTTTTGTAATGATTCTAACAAGTCTTTTAAAATTAGTAACAGTTTGATTTAAGGCACTACACGCATAAACATCCATATTTTTTGAGAATTAGCTGAGACATAAATACCTCAAACCTTAGCGATCTCATGGATCTCATGGAGGTGCAAGCCTCATCTATAAGACAAGTAAGCCTCTTATGATTCAAAAGAGAGGTGGAAACCTCATCTATAAGTCAAGTTAGCGTCAAATGATTCAAAGAAGGCATAAGCATCAAGGTTAATAATTTGAGTCTCTCTTTAAGAGGTGTCTCAAGGTGTAAGCCTTAAAAGCTTTTTAAAATATTAGTTAGATAGTTTACACAATTCTCTCTCTCTCTATATATAAATATATGTGTGTTTGTGTCTGTGTATTTAATTGTCAGTGTATGGACTTTTCAGGAGTTCTATCACCGACAGTTATCTCTTGGGAAATTTGATCTTCCTAGAATACTTGGAATGACTGCTTCTCCTATAAAGTCAAAGGGTATTTCAAGCACATTACTTTTGTTTTACTTATAA

mRNA sequence

ATGTCGTCGAATATGGAAATCGAGAACGAACAGCTAGTGGCTGATCCTTTACCATTCGCCAGAAGTTATCAGTTGGAAGGATTGGAAAAAGCACTTAAGCAGAACACGGTAGTGTTTTTAGAAACTGGCTCTGGGAAGACTTTGATCGCCATCATGCTTTTGCGCAGCTTTGCTCACCAACTACGCAAACCTTCACCCTTCATTGCTGTTTTCTTAGTTCCACAACAAGCTGAAGCTCTGAAGATGCATACTGACTTGAGCGTTGGTTTGTATTATGGAGATATGGGGGTAGACTTTTGGGATGGTGCAATTTGGAAGCGAGAAATAGAAAAGCATGAGGTGCTTGTGATGACCCCTGCAATTTTGCTAAGTGGCTTGAGGCATAGCTTCTTTCATCTAAGCATGATAAAGGTCCTAATAGTAGATGAATGTCATCATGCCAGAGGCAAACACCCCTATGCTTGCATTATGACGGAGTTCTATCACCGACAGTTATCTCTTGGGAAATTTGATCTTCCTAGAATACTTGGAATGACTGCTTCTCCTATAAAGTCAAAGGGTATTTCAAGCACATTACTTTTGTTTTACTTATAA

Coding sequence (CDS)

ATGTCGTCGAATATGGAAATCGAGAACGAACAGCTAGTGGCTGATCCTTTACCATTCGCCAGAAGTTATCAGTTGGAAGGATTGGAAAAAGCACTTAAGCAGAACACGGTAGTGTTTTTAGAAACTGGCTCTGGGAAGACTTTGATCGCCATCATGCTTTTGCGCAGCTTTGCTCACCAACTACGCAAACCTTCACCCTTCATTGCTGTTTTCTTAGTTCCACAACAAGCTGAAGCTCTGAAGATGCATACTGACTTGAGCGTTGGTTTGTATTATGGAGATATGGGGGTAGACTTTTGGGATGGTGCAATTTGGAAGCGAGAAATAGAAAAGCATGAGGTGCTTGTGATGACCCCTGCAATTTTGCTAAGTGGCTTGAGGCATAGCTTCTTTCATCTAAGCATGATAAAGGTCCTAATAGTAGATGAATGTCATCATGCCAGAGGCAAACACCCCTATGCTTGCATTATGACGGAGTTCTATCACCGACAGTTATCTCTTGGGAAATTTGATCTTCCTAGAATACTTGGAATGACTGCTTCTCCTATAAAGTCAAAGGGTATTTCAAGCACATTACTTTTGTTTTACTTATAA

Protein sequence

MSSNMEIENEQLVADPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQLRKPSPFIAVFLVPQQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEVLVMTPAILLSGLRHSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFDLPRILGMTASPIKSKGISSTLLLFYL

Homology

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BLAST of Cla009537 vs. Swiss-Prot
Match: DCL2_ARATH (Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2)

HSP 1 Score: 275.4 bits (703), Expect = 4.8e-73
Identity = 137/190 (72.11%), Postives = 156/190 (82.11%), Query Frame = 1


Query: 5   MEIEN-EQLVADPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQLRK 64
           ME E  +Q+ A PL FARSYQ+E LEKA+KQNT+VFLETGSGKTLIAIMLLRS+A+  RK
Sbjct: 8   METETTDQVSASPLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAYLFRK 67

Query: 65  PSPFIAVFLVP------QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEVLVM 124
           PSP   VFLVP      QQAEALKMHTDL VG+Y+GDMGVDFWD + WK+E++K+EVLVM
Sbjct: 68  PSPCFCVFLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVM 127

Query: 125 TPAILLSGLRHSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFDLPRILG 184
           TPAILL  LRHSF  LSMIKVLIVDECHHA GKHPYACIM EFYH++L+ G  ++PRI G
Sbjct: 128 TPAILLDALRHSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFG 187

Query: 185 MTASPIKSKG 188
           MTAS +K+KG
Sbjct: 188 MTASLVKTKG 197

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BLAST of Cla009537 vs. Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2)

HSP 1 Score: 208.0 bits (528), Expect = 9.5e-53
Identity = 110/183 (60.11%), Postives = 130/183 (71.04%), Query Frame = 1


Query: 15  DPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQLRKP-SPFIAVFLV 74
           DP   AR YQLE LE+A++ NT+ FLETGSGKTLIA+MLLR++AH++R+P S   AVFLV
Sbjct: 29  DPKTMARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLV 88

Query: 75  P------QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEVLVMTPAILLSGLR 134
           P      QQA  ++ HTDL V  + G+MGVDFWD A W+ ++E  EVLVMTP ILL  LR
Sbjct: 89  PTVVLVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLR 148

Query: 135 HSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFD-LPRILGMTASPIKSK 190
           HSFF L  I +LI DECHHARG  PYACI  EFYH QL+    D LPRI GM+AS I SK
Sbjct: 149 HSFFRLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSK 208

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BLAST of Cla009537 vs. Swiss-Prot
Match: DCL2A_ORYSJ (Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.5e-53
Identity = 110/183 (60.11%), Postives = 130/183 (71.04%), Query Frame = 1


Query: 15  DPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQLRKP-SPFIAVFLV 74
           DP   AR YQLE LE+A++ NT+ FLETGSGKTLIA+MLLR++AH++R+P S   AVFLV
Sbjct: 29  DPKTMARWYQLEALERAVRGNTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLV 88

Query: 75  P------QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEVLVMTPAILLSGLR 134
           P      QQA  ++ HTDL V  + G+MGVDFWD A W+ ++E  EVLVMTP ILL  LR
Sbjct: 89  PTVVLVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLR 148

Query: 135 HSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFD-LPRILGMTASPIKSK 190
           HSFF L  I +LI DECHHARG  PYACI  EFYH QL+    D LPRI GM+AS I SK
Sbjct: 149 HSFFRLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSK 208

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BLAST of Cla009537 vs. Swiss-Prot
Match: DCL1_ARATH (Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 9.8e-42
Identity = 96/195 (49.23%), Postives = 123/195 (63.08%), Query Frame = 1


Query: 3   SNMEIENEQLVADPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQLR 62
           S  E   E++V +    AR YQL+ LE+A  +NT+ FLETG+GKTLIAI+L++S    L 
Sbjct: 235 SKPEERKEKVVEEQ---ARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLM 294

Query: 63  KPS-PFIAVFLVP------QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEVL 122
             +   ++VFLVP      QQAE ++  T   VG Y G+MG DFWD   W+RE E  +VL
Sbjct: 295 SQNRKMLSVFLVPKVPLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVL 354

Query: 123 VMTPAILLSGLRHSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFDLPRI 182
           VMT  ILL+ LRHS   +  I +LI+DECHHA  KHPY+ +M+EFYH   +  K   P I
Sbjct: 355 VMTAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYH---TTPKDKRPAI 414

Query: 183 LGMTASPIKSKGISS 191
            GMTASP+  KG+SS
Sbjct: 415 FGMTASPVNLKGVSS 423

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BLAST of Cla009537 vs. Swiss-Prot
Match: DCL3A_ORYSJ (Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-39
Identity = 83/179 (46.37%), Postives = 112/179 (62.57%), Query Frame = 1


Query: 21  RSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQLR-KPSPFIAVFLVP----- 80
           R YQL+  E A+++NT+  L+TG+GKT+IA+ML++ F    R K +  + +FL P     
Sbjct: 33  RRYQLDVYEVAMRRNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPTVQLV 92

Query: 81  -QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEVLVMTPAILLSGLRHSFFHL 140
            QQ E +++HTD  V  YYG  GVD W G  W+ +I K++V+VMTP + L  LR++F  L
Sbjct: 93  TQQCEVIEIHTDFEVEQYYGAKGVDQWTGPRWQEQISKYQVMVMTPQVFLQALRNAFLIL 152

Query: 141 SMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFDLPRILGMTASPIKSKGISSTL 193
            M+ ++I DECHHA G HPY  IM EFYH+         P + GMTASP+  KGISS L
Sbjct: 153 DMVSLMIFDECHHATGNHPYTRIMKEFYHK-----SEHKPSVFGMTASPVIRKGISSHL 206

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BLAST of Cla009537 vs. TrEMBL
Match: A0A0A0LY14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654870 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 7.0e-95
Identity = 179/198 (90.40%), Postives = 185/198 (93.43%), Query Frame = 1


Query: 1   MSSNMEIENEQLVADPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQ 60
           M+SNME ENEQLVADPL FARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQ
Sbjct: 1   MASNMETENEQLVADPLSFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQ 60

Query: 61  LRKPSPFIAVFLVP------QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEV 120
           LRKPSPF+AVFLVP      QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEV
Sbjct: 61  LRKPSPFVAVFLVPQVVLVTQQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEV 120

Query: 121 LVMTPAILLSGLRHSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFDLPR 180
           LVMTPAILL+GLRHSFF LSMIKVLI+DECHHARGKHPYACIMTEFYH+QLSLGK DLPR
Sbjct: 121 LVMTPAILLNGLRHSFFRLSMIKVLILDECHHARGKHPYACIMTEFYHQQLSLGKSDLPR 180

Query: 181 ILGMTASPIKSKGISSTL 193
           I GMTASPIKSKG +S L
Sbjct: 181 IFGMTASPIKSKGGNSEL 198

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BLAST of Cla009537 vs. TrEMBL
Match: M5W8C9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000240mg PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.7e-77
Identity = 146/190 (76.84%), Postives = 165/190 (86.84%), Query Frame = 1


Query: 4   NMEIENEQLVADPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQLRK 63
           +ME++  QL ADPLPFARSYQLE LE A+KQNT+VFLETGSGKTLIAIMLLRS+A+ LRK
Sbjct: 10  DMEMDGIQLSADPLPFARSYQLEALEAAIKQNTIVFLETGSGKTLIAIMLLRSYAYMLRK 69

Query: 64  PSPFIAVFLVP------QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEVLVM 123
           PSPF+AVFLVP      QQAEALKMHTDL VG+Y+GDMGVDFW+  +WK++IEK+EVLVM
Sbjct: 70  PSPFVAVFLVPQVVLVKQQAEALKMHTDLKVGMYWGDMGVDFWEADMWKQQIEKYEVLVM 129

Query: 124 TPAILLSGLRHSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFDLPRILG 183
           TPAILLS LRHSFF LSMIKVLI+DECHHARG HPYACIM +F+HRQL     +LPRI G
Sbjct: 130 TPAILLSNLRHSFFKLSMIKVLILDECHHARGNHPYACIMKDFFHRQLHSDAAELPRIFG 189

Query: 184 MTASPIKSKG 188
           MTASPIKSKG
Sbjct: 190 MTASPIKSKG 199

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BLAST of Cla009537 vs. TrEMBL
Match: V7BN92_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G127200g PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.1e-76
Identity = 143/192 (74.48%), Postives = 162/192 (84.38%), Query Frame = 1


Query: 1   MSSNMEIENEQLVADPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQ 60
           M  +   + E+   D LPFARSYQLE L+KA+++NT+V+LETGSGKTLIAIMLLRS+AH 
Sbjct: 7   MEMDTHSQQEETTCDVLPFARSYQLEALDKAIRENTIVYLETGSGKTLIAIMLLRSYAHH 66

Query: 61  LRKPSPFIAVFLVP------QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEV 120
           LRKPSPFIAVFLVP      QQAEA+KMHTDL VG+Y+GDMGVD+WDGA WK+E EKHEV
Sbjct: 67  LRKPSPFIAVFLVPQVVLVSQQAEAVKMHTDLKVGMYWGDMGVDYWDGATWKQETEKHEV 126

Query: 121 LVMTPAILLSGLRHSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFDLPR 180
           LVMTP ILL+ LRHSFF L+MIKVLI+DECHHARGKHPYACIMTEFYH +L  G  DLPR
Sbjct: 127 LVMTPVILLNCLRHSFFKLNMIKVLIMDECHHARGKHPYACIMTEFYHHELKSGISDLPR 186

Query: 181 ILGMTASPIKSK 187
           I GMTASPIKSK
Sbjct: 187 IFGMTASPIKSK 198

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BLAST of Cla009537 vs. TrEMBL
Match: A0A0S3S4D7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G108500 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.3e-76
Identity = 145/198 (73.23%), Postives = 165/198 (83.33%), Query Frame = 1


Query: 1   MSSNMEIENEQ--LVADPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFA 60
           +S  ++  ++Q  +  D LPFARSYQLE L+KA+++NT+V+LETGSGKTLIAIMLLRS+A
Sbjct: 5   LSKEIDTHSQQGEITGDVLPFARSYQLEALDKAIRENTIVYLETGSGKTLIAIMLLRSYA 64

Query: 61  HQLRKPSPFIAVFLVP------QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKH 120
           H LRKPSPFIAVFLVP      QQAE +KMHTDL VG Y+GDMGVD+WDGA WK+E EKH
Sbjct: 65  HHLRKPSPFIAVFLVPQVVLVSQQAEVVKMHTDLKVGTYWGDMGVDYWDGATWKQETEKH 124

Query: 121 EVLVMTPAILLSGLRHSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFDL 180
           EVLVMTP ILL+ LRHSFF L+MIKVLI+DECHHARGKHPYACIMTEFYH QL  G  DL
Sbjct: 125 EVLVMTPVILLNCLRHSFFKLNMIKVLIMDECHHARGKHPYACIMTEFYHHQLKCGISDL 184

Query: 181 PRILGMTASPIKSKGISS 191
           PRI GMTASPIKSK  SS
Sbjct: 185 PRIFGMTASPIKSKVGSS 202

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BLAST of Cla009537 vs. TrEMBL
Match: K7LBG6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G025300 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 9.5e-76
Identity = 143/185 (77.30%), Postives = 159/185 (85.95%), Query Frame = 1


Query: 8   ENEQLVADPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQLRKPSPF 67
           E++ +  D LPFARSYQLE L KA+ +NT+V+LETGSGKTLIAIMLLRS+AHQLRKPSP+
Sbjct: 49  EDQNIAPDVLPFARSYQLEALYKAIHENTIVYLETGSGKTLIAIMLLRSYAHQLRKPSPY 108

Query: 68  IAVFLVPQ------QAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEVLVMTPAI 127
           IAVFLVPQ      QAEA+K HTDL VG+Y+GDMGVDFWD A WK+E+EKHEVLVMTPAI
Sbjct: 109 IAVFLVPQVVLVSQQAEAVKRHTDLKVGMYWGDMGVDFWDAATWKQEMEKHEVLVMTPAI 168

Query: 128 LLSGLRHSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFDLPRILGMTAS 187
           LLS LRHSFF L+MI VLI+DECHHARGKHPYACIMTEFYH QL  G  DLPRI GMTAS
Sbjct: 169 LLSCLRHSFFKLNMINVLIMDECHHARGKHPYACIMTEFYHHQLKSGISDLPRIFGMTAS 228

[Close]

BLAST of Cla009537 vs. NCBI nr
Match: gi|659085916|ref|XP_008443675.1| (PREDICTED: endoribonuclease Dicer homolog 2 isoform X3 [Cucumis melo])

HSP 1 Score: 355.9 bits (912), Expect = 4.5e-95
Identity = 176/198 (88.89%), Postives = 186/198 (93.94%), Query Frame = 1


Query: 1   MSSNMEIENEQLVADPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQ 60
           M+SNME ENEQLVADPL FARSYQLEGLEKALKQNT+VFLETGSGKTLIAIMLLRSFAHQ
Sbjct: 1   MASNMETENEQLVADPLSFARSYQLEGLEKALKQNTIVFLETGSGKTLIAIMLLRSFAHQ 60

Query: 61  LRKPSPFIAVFLVP------QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEV 120
           LRKPSPF+AVFLVP      QQAEALKMHTDLSVGLYYGDMG+DFWDGAIWKREIEKHEV
Sbjct: 61  LRKPSPFVAVFLVPQVVLVTQQAEALKMHTDLSVGLYYGDMGIDFWDGAIWKREIEKHEV 120

Query: 121 LVMTPAILLSGLRHSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFDLPR 180
           LVMTPAILL+GLRHSFFH+SMIKVL++DECHHARGKHPYACIMTEFYH+QLSLGK DLPR
Sbjct: 121 LVMTPAILLNGLRHSFFHISMIKVLVLDECHHARGKHPYACIMTEFYHQQLSLGKSDLPR 180

Query: 181 ILGMTASPIKSKGISSTL 193
           I GMTASPIKSKG +S L
Sbjct: 181 IFGMTASPIKSKGGNSEL 198

[Close]

BLAST of Cla009537 vs. NCBI nr
Match: gi|659085914|ref|XP_008443674.1| (PREDICTED: endoribonuclease Dicer homolog 2 isoform X2 [Cucumis melo])

HSP 1 Score: 355.9 bits (912), Expect = 4.5e-95
Identity = 176/198 (88.89%), Postives = 186/198 (93.94%), Query Frame = 1


Query: 1   MSSNMEIENEQLVADPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQ 60
           M+SNME ENEQLVADPL FARSYQLEGLEKALKQNT+VFLETGSGKTLIAIMLLRSFAHQ
Sbjct: 1   MASNMETENEQLVADPLSFARSYQLEGLEKALKQNTIVFLETGSGKTLIAIMLLRSFAHQ 60

Query: 61  LRKPSPFIAVFLVP------QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEV 120
           LRKPSPF+AVFLVP      QQAEALKMHTDLSVGLYYGDMG+DFWDGAIWKREIEKHEV
Sbjct: 61  LRKPSPFVAVFLVPQVVLVTQQAEALKMHTDLSVGLYYGDMGIDFWDGAIWKREIEKHEV 120

Query: 121 LVMTPAILLSGLRHSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFDLPR 180
           LVMTPAILL+GLRHSFFH+SMIKVL++DECHHARGKHPYACIMTEFYH+QLSLGK DLPR
Sbjct: 121 LVMTPAILLNGLRHSFFHISMIKVLVLDECHHARGKHPYACIMTEFYHQQLSLGKSDLPR 180

Query: 181 ILGMTASPIKSKGISSTL 193
           I GMTASPIKSKG +S L
Sbjct: 181 IFGMTASPIKSKGGNSEL 198

[Close]

BLAST of Cla009537 vs. NCBI nr
Match: gi|659085908|ref|XP_008443670.1| (PREDICTED: endoribonuclease Dicer homolog 2 isoform X1 [Cucumis melo])

HSP 1 Score: 355.9 bits (912), Expect = 4.5e-95
Identity = 176/198 (88.89%), Postives = 186/198 (93.94%), Query Frame = 1


Query: 1   MSSNMEIENEQLVADPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQ 60
           M+SNME ENEQLVADPL FARSYQLEGLEKALKQNT+VFLETGSGKTLIAIMLLRSFAHQ
Sbjct: 1   MASNMETENEQLVADPLSFARSYQLEGLEKALKQNTIVFLETGSGKTLIAIMLLRSFAHQ 60

Query: 61  LRKPSPFIAVFLVP------QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEV 120
           LRKPSPF+AVFLVP      QQAEALKMHTDLSVGLYYGDMG+DFWDGAIWKREIEKHEV
Sbjct: 61  LRKPSPFVAVFLVPQVVLVTQQAEALKMHTDLSVGLYYGDMGIDFWDGAIWKREIEKHEV 120

Query: 121 LVMTPAILLSGLRHSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFDLPR 180
           LVMTPAILL+GLRHSFFH+SMIKVL++DECHHARGKHPYACIMTEFYH+QLSLGK DLPR
Sbjct: 121 LVMTPAILLNGLRHSFFHISMIKVLVLDECHHARGKHPYACIMTEFYHQQLSLGKSDLPR 180

Query: 181 ILGMTASPIKSKGISSTL 193
           I GMTASPIKSKG +S L
Sbjct: 181 IFGMTASPIKSKGGNSEL 198

[Close]

BLAST of Cla009537 vs. NCBI nr
Match: gi|449442659|ref|XP_004139098.1| (PREDICTED: endoribonuclease Dicer homolog 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 1.0e-94
Identity = 179/198 (90.40%), Postives = 185/198 (93.43%), Query Frame = 1


Query: 1   MSSNMEIENEQLVADPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQ 60
           M+SNME ENEQLVADPL FARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQ
Sbjct: 1   MASNMETENEQLVADPLSFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQ 60

Query: 61  LRKPSPFIAVFLVP------QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEV 120
           LRKPSPF+AVFLVP      QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEV
Sbjct: 61  LRKPSPFVAVFLVPQVVLVTQQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEV 120

Query: 121 LVMTPAILLSGLRHSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFDLPR 180
           LVMTPAILL+GLRHSFF LSMIKVLI+DECHHARGKHPYACIMTEFYH+QLSLGK DLPR
Sbjct: 121 LVMTPAILLNGLRHSFFRLSMIKVLILDECHHARGKHPYACIMTEFYHQQLSLGKSDLPR 180

Query: 181 ILGMTASPIKSKGISSTL 193
           I GMTASPIKSKG +S L
Sbjct: 181 IFGMTASPIKSKGGNSEL 198

[Close]

BLAST of Cla009537 vs. NCBI nr
Match: gi|778664083|ref|XP_011660217.1| (PREDICTED: endoribonuclease Dicer homolog 2 isoform X2 [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 1.0e-94
Identity = 179/198 (90.40%), Postives = 185/198 (93.43%), Query Frame = 1


Query: 1   MSSNMEIENEQLVADPLPFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQ 60
           M+SNME ENEQLVADPL FARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQ
Sbjct: 1   MASNMETENEQLVADPLSFARSYQLEGLEKALKQNTVVFLETGSGKTLIAIMLLRSFAHQ 60

Query: 61  LRKPSPFIAVFLVP------QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEV 120
           LRKPSPF+AVFLVP      QQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEV
Sbjct: 61  LRKPSPFVAVFLVPQVVLVTQQAEALKMHTDLSVGLYYGDMGVDFWDGAIWKREIEKHEV 120

Query: 121 LVMTPAILLSGLRHSFFHLSMIKVLIVDECHHARGKHPYACIMTEFYHRQLSLGKFDLPR 180
           LVMTPAILL+GLRHSFF LSMIKVLI+DECHHARGKHPYACIMTEFYH+QLSLGK DLPR
Sbjct: 121 LVMTPAILLNGLRHSFFRLSMIKVLILDECHHARGKHPYACIMTEFYHQQLSLGKSDLPR 180

Query: 181 ILGMTASPIKSKGISSTL 193
           I GMTASPIKSKG +S L
Sbjct: 181 IFGMTASPIKSKGGNSEL 198

The following BLAST results are available for this feature:

BLAST of Cla009537 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DCL2_ARATH	4.8e-73	72.11	Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2	[more]
DCL2B_ORYSJ	9.5e-53	60.11	Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 ...	[more]
DCL2A_ORYSJ	9.5e-53	60.11	Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 ...	[more]
DCL1_ARATH	9.8e-42	49.23	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2	[more]
DCL3A_ORYSJ	1.6e-39	46.37	Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 ...	[more]

BLAST of Cla009537 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY14_CUCSA	7.0e-95	90.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654870 PE=4 SV=1	[more]
M5W8C9_PRUPE	1.7e-77	76.84	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000240mg PE=4 SV=1	[more]
V7BN92_PHAVU	1.1e-76	74.48	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G127200g PE=4 SV=1	[more]
A0A0S3S4D7_PHAAN	7.3e-76	73.23	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G108500 PE=...	[more]
K7LBG6_SOYBN	9.5e-76	77.30	Uncharacterized protein OS=Glycine max GN=GLYMA_09G025300 PE=4 SV=1	[more]

BLAST of Cla009537 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085916\|ref\|XP_008443675.1\|	4.5e-95	88.89	PREDICTED: endoribonuclease Dicer homolog 2 isoform X3 [Cucumis melo]	[more]
gi\|659085914\|ref\|XP_008443674.1\|	4.5e-95	88.89	PREDICTED: endoribonuclease Dicer homolog 2 isoform X2 [Cucumis melo]	[more]
gi\|659085908\|ref\|XP_008443670.1\|	4.5e-95	88.89	PREDICTED: endoribonuclease Dicer homolog 2 isoform X1 [Cucumis melo]	[more]
gi\|449442659\|ref\|XP_004139098.1\|	1.0e-94	90.40	PREDICTED: endoribonuclease Dicer homolog 2 isoform X1 [Cucumis sativus]	[more]
gi\|778664083\|ref\|XP_011660217.1\|	1.0e-94	90.40	PREDICTED: endoribonuclease Dicer homolog 2 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006935	Helicase/UvrB_N
IPR014001	Helicase_ATP-bd
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0005524	ATP binding
GO:0016787	hydrolase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051607	defense response to virus
biological_process	GO:0010216	maintenance of DNA methylation
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0090501	RNA phosphodiester bond hydrolysis
biological_process	GO:0051214	RNA virus induced gene silencing
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016442	RISC complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009537	Cla009537.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006935	Helicase/UvrB, N-terminal	PFAM	PF04851	ResIII	coord: 28..183 score: 4.1
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 16..196 score: 1.4
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROFILE	PS51192	HELICASE_ATP_BIND_1	coord: 27..197 score: 17
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 12..181 score: 3.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 18..191 score: 7.32
None	No IPR available	PANTHER	PTHR14950	HELICASE-RELATED	coord: 2..191 score: 3.0E
None	No IPR available	PANTHER	PTHR14950:SF19	ENDORIBONUCLEASE DICER HOMOLOG 2	coord: 2..191 score: 3.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009537	Cla97C03G061160	Watermelon (97103) v2	wmwmbB126
Cla009537	Csa1G654870	Cucumber (Chinese Long) v2	cuwmB011
Cla009537	MELO3C010041	Melon (DHL92) v3.5.1	mewmB263
Cla009537	ClCG03G010510	Watermelon (Charleston Gray)	wcgwmB225
Cla009537	CSPI01G32200	Wild cucumber (PI 183967)	cpiwmB013
Cla009537	Cucsa.356600	Cucumber (Gy14) v1	cgywmB638
Cla009537	Cp4.1LG18g02480	Cucurbita pepo (Zucchini)	cpewmB350
Cla009537	CsGy1G031130	Cucumber (Gy14) v2	cgybwmB013
Cla009537	MELO3C010042.2	Melon (DHL92) v3.6.1	medwmB254
Cla009537	Carg17802	Silver-seed gourd	carwmB0970
Cla009537	CsaV3_1G044420	Cucumber (Chinese Long) v3	cucwmB016
Cla009537	Bhi02G001096	Wax gourd	wgowmB655

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009537	Cucurbita maxima (Rimu)	cmawmB051
Cla009537	Cucurbita maxima (Rimu)	cmawmB093
Cla009537	Cucurbita moschata (Rifu)	cmowmB043
Cla009537	Cucurbita moschata (Rifu)	cmowmB084
Cla009537	Cucurbita pepo (Zucchini)	cpewmB006
Cla009537	Bottle gourd (USVL1VR-Ls)	lsiwmB391
Cla009537	Silver-seed gourd	carwmB0531
Cla009537	Wax gourd	wgowmB661