Cla009431 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009431
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	CTV.22 (AHRD V1 ***- Q8H6Q7_PONTR)
Location	Chr9 : 17232246 .. 17232758 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGATTTTCTCTAGATTCTGTCGTCGGTAAGAATTCTCCCAAATTTGCAATGGGACCAAAAATTGGCAAAACCGACTTCTCTTGCTCCCTTTTCTGATTTTTTGTTATTTTACATCCACGATAGATTGGGTGATTTAATCATCTTCTGCCTGTTCCTTCTCTTTGGTGAATGCCTTGCTTTTCACTTTATTACTCGAGCCTATGATTCTTGCTTAAAATCCTGTAATTTTCTGTTTAATTTCATTTCAGTTTTGTTGGTCCCTATAAGTGTATTATCGTTATCATCATCATTTTTTTTGCAGTAAGGAATATGAAGACCTTTCAGTAAAGGCCAAGTCAAGATTTAGCATATCCTTGCGAAACCTTTCACAACCGATGTCGCTCGGGGACATGGCAAGAACTTGGGATGTCTGTGCACGTGCTGTTGTTTCTGAGTACGCTCAGCAGAGCGGTGGTGGCAGCTTTTGTTCAAAGTATGGTGCTTGGGAGAACTGTTTGAGCGCTGCGTGA

mRNA sequence

ATGCTGATTTTCTCTAGATTCTGTCGTCGTAAGGAATATGAAGACCTTTCAGTAAAGGCCAAGTCAAGATTTAGCATATCCTTGCGAAACCTTTCACAACCGATGTCGCTCGGGGACATGGCAAGAACTTGGGATGTCTGTGCACGTGCTGTTGTTTCTGAGTACGCTCAGCAGAGCGGTGGTGGCAGCTTTTGTTCAAAGTATGGTGCTTGGGAGAACTGTTTGAGCGCTGCGTGA

Coding sequence (CDS)

ATGCTGATTTTCTCTAGATTCTGTCGTCGTAAGGAATATGAAGACCTTTCAGTAAAGGCCAAGTCAAGATTTAGCATATCCTTGCGAAACCTTTCACAACCGATGTCGCTCGGGGACATGGCAAGAACTTGGGATGTCTGTGCACGTGCTGTTGTTTCTGAGTACGCTCAGCAGAGCGGTGGTGGCAGCTTTTGTTCAAAGTATGGTGCTTGGGAGAACTGTTTGAGCGCTGCGTGA

Protein sequence

MLIFSRFCRRKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA

Homology

[Close]

BLAST of Cla009431 vs. Swiss-Prot
Match: MD15A_ARATH (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana GN=MED15A PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.2e-20
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1


Query: 11   KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 70
            KE EDLS KA +RF+I LR+LSQPMSL D+A+TWD CARAV+ EYAQQ GGG+F SKYG 
Sbjct: 1268 KENEDLSSKAMARFNILLRSLSQPMSLKDIAKTWDACARAVICEYAQQFGGGTFSSKYGT 1327

Query: 71   WENCLSAA 79
            WE  ++A+
Sbjct: 1328 WEKYVAAS 1335

[Close]

BLAST of Cla009431 vs. Swiss-Prot
Match: MD15C_ARATH (Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis thaliana GN=MED15C PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-14
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1


Query: 12  EYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAW 71
           +YEDLS + +SRFS+S++  S+P     +A+TW+ CARA + EYA++ GGG+F SKYGAW
Sbjct: 869 KYEDLSARTRSRFSLSMKEFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSKYGAW 928

Query: 72  ENCLSAA 79
           E  L A+
Sbjct: 929 ETVLRAS 935

[Close]

BLAST of Cla009431 vs. TrEMBL
Match: A0A0A0K1Y1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G057520 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 9.1e-30
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 11  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 70
           KEYEDLS+KAKSRFSISLRNLSQPMSL D+ARTWDVCARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 385 KEYEDLSIKAKSRFSISLRNLSQPMSLADIARTWDVCARAVVSEYAQQSGGGSFCSKYGA 444

Query: 71  WENCLSAA 79
           WENCLSAA
Sbjct: 445 WENCLSAA 452

[Close]

BLAST of Cla009431 vs. TrEMBL
Match: F6HIX6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0047g01240 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.5e-28
Identity = 62/68 (91.18%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 11   KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 70
            KEYEDLSVKAKSRFSISLR+LSQPMSLG++ARTWDVCARAV+SEYAQQSGGGSF S+YGA
Sbjct: 1120 KEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARAVISEYAQQSGGGSFSSRYGA 1179

Query: 71   WENCLSAA 79
            WENCLSAA
Sbjct: 1180 WENCLSAA 1187

[Close]

BLAST of Cla009431 vs. TrEMBL
Match: A0A067EEL3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000769mg PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-27
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 11   KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 70
            KEYEDLSVKAKSRFSISLR+LSQPMSLG++ARTWDVCAR V+SEYAQQSGGGSF SKYG 
Sbjct: 1198 KEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGT 1257

Query: 71   WENCLSAA 79
            WENCLSAA
Sbjct: 1258 WENCLSAA 1265

[Close]

BLAST of Cla009431 vs. TrEMBL
Match: Q8H6Q7_PONTR (CTV.22 OS=Poncirus trifoliata GN=CTV.22 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-27
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 11   KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 70
            KEYEDLSVKAKSRFSISLR+LSQPMSLG++ARTWDVCAR V+SEYAQQSGGGSF SKYG 
Sbjct: 1338 KEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGT 1397

Query: 71   WENCLSAA 79
            WENCLSAA
Sbjct: 1398 WENCLSAA 1405

[Close]

BLAST of Cla009431 vs. TrEMBL
Match: V4SUA9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024717mg PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-27
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 11   KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 70
            KEYEDLSVKAKSRFSISLR+LSQPMSLG++ARTWDVCAR V+SEYAQQSGGGSF SKYG 
Sbjct: 1316 KEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGT 1375

Query: 71   WENCLSAA 79
            WENCLSAA
Sbjct: 1376 WENCLSAA 1383

[Close]

BLAST of Cla009431 vs. NCBI nr
Match: gi|778724247|ref|XP_011658765.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-29
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 11   KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 70
            KEYEDLS+KAKSRFSISLRNLSQPMSL D+ARTWDVCARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 1283 KEYEDLSIKAKSRFSISLRNLSQPMSLADIARTWDVCARAVVSEYAQQSGGGSFCSKYGA 1342

Query: 71   WENCLSAA 79
            WENCLSAA
Sbjct: 1343 WENCLSAA 1350

[Close]

BLAST of Cla009431 vs. NCBI nr
Match: gi|700188442|gb|KGN43675.1| (hypothetical protein Csa_7G057520 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-29
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 11  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 70
           KEYEDLS+KAKSRFSISLRNLSQPMSL D+ARTWDVCARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 385 KEYEDLSIKAKSRFSISLRNLSQPMSLADIARTWDVCARAVVSEYAQQSGGGSFCSKYGA 444

Query: 71  WENCLSAA 79
           WENCLSAA
Sbjct: 445 WENCLSAA 452

[Close]

BLAST of Cla009431 vs. NCBI nr
Match: gi|659110481|ref|XP_008455247.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 11   KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 70
            KEYEDLS+KAKSRFSISLRNLSQPM L D+ARTWD+CARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 1289 KEYEDLSIKAKSRFSISLRNLSQPMLLRDIARTWDICARAVVSEYAQQSGGGSFCSKYGA 1348

Query: 71   WENCLSAA 79
            WENCLSAA
Sbjct: 1349 WENCLSAA 1356

[Close]

BLAST of Cla009431 vs. NCBI nr
Match: gi|659110483|ref|XP_008455248.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X2 [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 11   KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 70
            KEYEDLS+KAKSRFSISLRNLSQPM L D+ARTWD+CARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 1286 KEYEDLSIKAKSRFSISLRNLSQPMLLRDIARTWDICARAVVSEYAQQSGGGSFCSKYGA 1345

Query: 71   WENCLSAA 79
            WENCLSAA
Sbjct: 1346 WENCLSAA 1353

[Close]

BLAST of Cla009431 vs. NCBI nr
Match: gi|296085348|emb|CBI29080.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 131.0 bits (328), Expect = 9.3e-28
Identity = 62/68 (91.18%), Postives = 67/68 (98.53%), Query Frame = 1


Query: 11  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 70
           KEYEDLSVKAKSRFSISLR+LSQPMSLG++ARTWDVCARAV+SEYAQQSGGGSF S+YGA
Sbjct: 233 KEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARAVISEYAQQSGGGSFSSRYGA 292

Query: 71  WENCLSAA 79
           WENCLSAA
Sbjct: 293 WENCLSAA 300

The following BLAST results are available for this feature:

BLAST of Cla009431 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MD15A_ARATH	4.2e-20	67.65	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]
MD15C_ARATH	1.5e-14	52.24	Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis ...	[more]

BLAST of Cla009431 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1Y1_CUCSA	9.1e-30	95.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G057520 PE=4 SV=1	[more]
F6HIX6_VITVI	6.5e-28	91.18	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0047g01240 PE=4 SV=...	[more]
A0A067EEL3_CITSI	2.5e-27	89.71	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000769mg PE=4 SV=1	[more]
Q8H6Q7_PONTR	2.5e-27	89.71	CTV.22 OS=Poncirus trifoliata GN=CTV.22 PE=4 SV=1	[more]
V4SUA9_9ROSI	2.5e-27	89.71	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024717mg PE=4 SV=1	[more]

BLAST of Cla009431 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778724247\|ref\|XP_011658765.1\|	1.3e-29	95.59	PREDICTED: mediator of RNA polymerase II transcription subunit 15a [Cucumis sati...	[more]
gi\|700188442\|gb\|KGN43675.1\|	1.3e-29	95.59	hypothetical protein Csa_7G057520 [Cucumis sativus]	[more]
gi\|659110481\|ref\|XP_008455247.1\|	1.4e-28	92.65	PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [C...	[more]
gi\|659110483\|ref\|XP_008455248.1\|	1.4e-28	92.65	PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X2 [C...	[more]
gi\|296085348\|emb\|CBI29080.3\|	9.3e-28	91.18	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003712	transcription cofactor activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU15728	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009431	Cla009431.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU15728	WMU15728	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33137	FAMILY NOT NAMED	coord: 10..78 score: 5.8
None	No IPR available	PANTHER	PTHR33137:SF4	F7H2.13 PROTEIN-RELATED	coord: 10..78 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla009431	Cla97C09G176100	Watermelon (97103) v2	wmwmbB047
Cla009431	Csa7G057520	Cucumber (Chinese Long) v2	cuwmB562
Cla009431	MELO3C018679	Melon (DHL92) v3.5.1	mewmB211
Cla009431	CSPI07G05180	Wild cucumber (PI 183967)	cpiwmB580
Cla009431	Cucsa.345840	Cucumber (Gy14) v1	cgywmB622
Cla009431	CmaCh11G016240	Cucurbita maxima (Rimu)	cmawmB081
Cla009431	CmaCh19G002810	Cucurbita maxima (Rimu)	cmawmB482
Cla009431	CmoCh19G003080	Cucurbita moschata (Rifu)	cmowmB475
Cla009431	Lsi03G008060	Bottle gourd (USVL1VR-Ls)	lsiwmB237
Cla009431	Cp4.1LG15g02490	Cucurbita pepo (Zucchini)	cpewmB247
Cla009431	Cp4.1LG04g06870	Cucurbita pepo (Zucchini)	cpewmB635
Cla009431	CsGy7G004750	Cucumber (Gy14) v2	cgybwmB524
Cla009431	Carg24582	Silver-seed gourd	carwmB0645
Cla009431	CsaV3_7G006140	Cucumber (Chinese Long) v3	cucwmB586

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009431	Wax gourd	wgowmB248
Cla009431	Watermelon (Charleston Gray)	wcgwmB013
Cla009431	Melon (DHL92) v3.6.1	medwmB209
Cla009431	Watermelon (97103) v2	wmwmbB041