Cla009330 (gene) Watermelon (97103) v1

Overview
NameCla009330
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr6 : 5785079 .. 5785462 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCGAAGAAGATGATGGCAGTGTTTGTAATGTGCATTCTGGTGGTGGCGGCACTTGAGATATCCACCGTGGCGGCGGGGGAGGAGGCTAAATGTGATGGAAATTGCGGCGGAGTTGGTGGTTCTCCAAATACTACTCCGAGGAAAAAAACATTTTTCAGCCGCATTGCCGGTAATTAACATCTATCAATTTTTCTGCGCTTTTCAATACTGGATTTTGGCATCTCAATTTGTAATTTTTTTATTTTTTTATTTTTTTAATTTCCTTTTAGTCTTTCCTTTTTCATTTTTCATTTTTCTTTATATTAATTTTTGTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAGATAAACTCCACCTGAAGCTACGCGATTGA

mRNA sequence

ATGGCGGCGAAGAAGATGATGGCAGTGTTTGTAATGTGCATTCTGGTGGTGGCGGCACTTGAGATATCCACCGTGGCGGCGGGGGAGGAGGCTAAATGTGATGGAAATTGCGGCGGAGTTGGTGGTTCTCCAAATACTACTCCGAGGAAAAAAACATTTTTCAGCCGCATTGCCGATAAACTCCACCTGAAGCTACGCGATTGA

Coding sequence (CDS)

ATGGCGGCGAAGAAGATGATGGCAGTGTTTGTAATGTGCATTCTGGTGGTGGCGGCACTTGAGATATCCACCGTGGCGGCGGGGGAGGAGGCTAAATGTGATGGAAATTGCGGCGGAGTTGGTGGTTCTCCAAATACTACTCCGAGGAAAAAAACATTTTTCAGCCGCATTGCCGATAAACTCCACCTGAAGCTACGCGATTGA

Protein sequence

MAAKKMMAVFVMCILVVAALEISTVAAGEEAKCDGNCGGVGGSPNTTPRKKTFFSRIADKLHLKLRD
Homology
[Close]
BLAST of Cla009330 vs. TrEMBL
Match: A0A0A0KFK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G200320 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-07
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 4  KKMMAVFVMCILVVAALEISTVAAGEEAKCDGNCGGVGGSPNTTPRKKTFFSRIADKL 62
          KKMMAVF++CILV+AALEIS VAAGEEA             N  PRKK+ FSRI DKL
Sbjct: 3  KKMMAVFLLCILVLAALEISAVAAGEEA-------------NNIPRKKSLFSRIFDKL 47

[Close]
BLAST of Cla009330 vs. NCBI nr
Match: gi|700192003|gb|KGN47207.1| (hypothetical protein Csa_6G200320 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 4  KKMMAVFVMCILVVAALEISTVAAGEEAKCDGNCGGVGGSPNTTPRKKTFFSRIADKL 62
          KKMMAVF++CILV+AALEIS VAAGEEA             N  PRKK+ FSRI DKL
Sbjct: 3  KKMMAVFLLCILVLAALEISAVAAGEEA-------------NNIPRKKSLFSRIFDKL 47

The following BLAST results are available for this feature:
BLAST of Cla009330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFK4_CUCSA1.4e-0762.07Uncharacterized protein OS=Cucumis sativus GN=Csa_6G200320 PE=4 SV=1[more]
BLAST of Cla009330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192003|gb|KGN47207.1|2.0e-0762.07hypothetical protein Csa_6G200320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009330Cla009330.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla009330Cucumber (Gy14) v1cgywmB483
Cla009330Cucurbita maxima (Rimu)cmawmB250
Cla009330Cucurbita maxima (Rimu)cmawmB357
Cla009330Cucurbita maxima (Rimu)cmawmB358
Cla009330Cucurbita maxima (Rimu)cmawmB811
Cla009330Cucurbita maxima (Rimu)cmawmB878
Cla009330Cucurbita moschata (Rifu)cmowmB239
Cla009330Cucurbita moschata (Rifu)cmowmB353
Cla009330Cucurbita moschata (Rifu)cmowmB802
Cla009330Cucurbita moschata (Rifu)cmowmB867
Cla009330Melon (DHL92) v3.5.1mewmB141
Cla009330Melon (DHL92) v3.5.1mewmB486
Cla009330Watermelon (Charleston Gray)wcgwmB042
Cla009330Watermelon (Charleston Gray)wcgwmB311
Cla009330Watermelon (Charleston Gray)wcgwmB344
Cla009330Cucumber (Chinese Long) v2cuwmB279
Cla009330Cucurbita pepo (Zucchini)cpewmB160
Cla009330Cucurbita pepo (Zucchini)cpewmB161
Cla009330Cucurbita pepo (Zucchini)cpewmB334
Cla009330Cucurbita pepo (Zucchini)cpewmB340
Cla009330Cucurbita pepo (Zucchini)cpewmB623
Cla009330Cucurbita pepo (Zucchini)cpewmB853
Cla009330Bottle gourd (USVL1VR-Ls)lsiwmB040
Cla009330Bottle gourd (USVL1VR-Ls)lsiwmB226
Cla009330Bottle gourd (USVL1VR-Ls)lsiwmB384
Cla009330Cucumber (Gy14) v2cgybwmB262
Cla009330Cucumber (Gy14) v2cgybwmB576
Cla009330Melon (DHL92) v3.6.1medwmB139
Cla009330Melon (DHL92) v3.6.1medwmB474
Cla009330Silver-seed gourdcarwmB0073
Cla009330Silver-seed gourdcarwmB0111
Cla009330Silver-seed gourdcarwmB0317
Cla009330Silver-seed gourdcarwmB0604
Cla009330Silver-seed gourdcarwmB0835
Cla009330Cucumber (Chinese Long) v3cucwmB288
Cla009330Watermelon (97103) v2wmwmbB402
Cla009330Watermelon (97103) v2wmwmbB406
Cla009330Watermelon (97103) v2wmwmbB419
Cla009330Wax gourdwgowmB094
Cla009330Wax gourdwgowmB238
Cla009330Watermelon (97103) v1wmwmB037
Cla009330Watermelon (97103) v1wmwmB138