Cla009150 (gene) Watermelon (97103) v1

Overview
NameCla009150
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 23310972 .. 23311355 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGGCGTACGACTCCAGTGATCGGAATGCCACCGTGCCGGTTGAGGAAGAAGATACAACCAGTTACCAATCTAAAGGAGTGCGTATTGAGGATCAGACCGTTTATGAACCTCTCCGCCGTCTGTTCGCCGACATTTTCTTTCCCGATGAAACTAAGGGTTCTTCTCTGTTTCAACGCGTCAAGGTCTCCGTCGCTGAGAATGGCCCTGCTGTTGGACAAGCTTGCAGAAACTTTGGTCGCGATGTTCTTTGTTGGACTCGCAGGGGCAGTCCTCTTCGAGCAGTCCTTGTTATCTCCGTGAGTATTACTTATAATTCCAAAATGGTGGTTGTCTGGACTTGTTCATTGTGTTCGAAATCCTTTAAGTTCAGTAATTAA

mRNA sequence

ATGGCGGAGGCGTACGACTCCAGTGATCGGAATGCCACCGTGCCGGTTGAGGAAGAAGATACAACCAGTTACCAATCTAAAGGAGTGCGTATTGAGGATCAGACCGTTTATGAACCTCTCCGCCGTCTGTTCGCCGACATTTTCTTTCCCGATGAAACTAAGGGTTCTTCTCTGTTTCAACGCGTCAAGGTCTCCGTCGCTGAGAATGGCCCTGCTGTTGGACAAGCTTGCAGAAACTTTGGTCGCGATGTTCTTTGTTGGACTCGCAGGGGCAGTCCTCTTCGAGCAGTCCTTGTTATCTCCGTGAGTATTACTTATAATTCCAAAATGGTGGTTGTCTGGACTTGTTCATTGTGTTCGAAATCCTTTAAGTTCAGTAATTAA

Coding sequence (CDS)

ATGGCGGAGGCGTACGACTCCAGTGATCGGAATGCCACCGTGCCGGTTGAGGAAGAAGATACAACCAGTTACCAATCTAAAGGAGTGCGTATTGAGGATCAGACCGTTTATGAACCTCTCCGCCGTCTGTTCGCCGACATTTTCTTTCCCGATGAAACTAAGGGTTCTTCTCTGTTTCAACGCGTCAAGGTCTCCGTCGCTGAGAATGGCCCTGCTGTTGGACAAGCTTGCAGAAACTTTGGTCGCGATGTTCTTTGTTGGACTCGCAGGGGCAGTCCTCTTCGAGCAGTCCTTGTTATCTCCGTGAGTATTACTTATAATTCCAAAATGGTGGTTGTCTGGACTTGTTCATTGTGTTCGAAATCCTTTAAGTTCAGTAATTAA

Protein sequence

MAEAYDSSDRNATVPVEEEDTTSYQSKGVRIEDQTVYEPLRRLFADIFFPDETKGSSLFQRVKVSVAENGPAVGQACRNFGRDVLCWTRRGSPLRAVLVISVSITYNSKMVVVWTCSLCSKSFKFSN
Homology
[Close]
BLAST of Cla009150 vs. TrEMBL
Match: A0A0A0KNC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G427940 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.3e-38
Identity = 84/102 (82.35%), Postives = 90/102 (88.24%), Query Frame = 1 

Query: 1   MAEAYDSSDRNATVPVEEEDTTSYQSKGVRIEDQTVYEPLRRLFADIFFPDETKGSSLFQ 60
           MAEA+DS DRN TVPVEEED +S+QSKGV  EDQTVYEPLRRL A+IFFPDE KG SLF 
Sbjct: 1   MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKG-SLFH 60

Query: 61  RVKVSVAENGPAVGQACRNFGRDVLCWTRRGSPLRAVLVISV 103
           RVKVSV +NGPAV QACRNFGRDVL WTRRGSPLRA+LVISV
Sbjct: 61  RVKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISV 101

[Close]
BLAST of Cla009150 vs. TrEMBL
Match: G7K3E8_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_5g091900 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-15
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 1 

Query: 1   MAEAYDSSDRNATVP---VEEEDTTSYQSKGVRIEDQTVYEPLRRLFADIFFPDETKGSS 60
           MAE  +S+  +  V     EEE+T + + +  +   QT+ E L RL + I FPD   G+S
Sbjct: 1   MAENSNSNGNSVHVEHEEEEEEETNNLKHRNTKPVKQTLPEVLNRLASTILFPDPADGTS 60

Query: 61  LFQRVKVSVAENGPAVGQACRNFGRDVLCWTRRGSPLRAVLVISV 103
           L +R+K SVA+N P + +A RN   DVL WTRRGSPLRA+LVISV
Sbjct: 61  LLRRIKNSVADNAPLIPEASRNSANDVLVWTRRGSPLRALLVISV 105

[Close]
BLAST of Cla009150 vs. TrEMBL
Match: V4SA05_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029179mg PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-15
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1 

Query: 4   AYDSSDRNAT-----VPVEEEDTTSYQSKGVRIEDQTVYEPLRRLFADIFFPDETK---G 63
           +Y+S   N       VPV+++D T  + KG+  +D+T+Y  + R+F  I FPD       
Sbjct: 6   SYESDGLNGVGVGVGVPVDDDDATK-KYKGIPCDDETLYGVIHRMFTMILFPDSNSRVAS 65

Query: 64  SSLFQRVKVSVAENGPAVGQACRNFGRDVLCWTRRGSPLRAVLVISV 103
            SL +R+K+S++ENG  + QA RN GR VL WTRRGSP+RA+ VISV
Sbjct: 66  FSLLRRIKISLSENGSHLRQASRNTGRKVLLWTRRGSPIRALFVISV 111

[Close]
BLAST of Cla009150 vs. TrEMBL
Match: W9S3F9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007805 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-13
Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = 1 

Query: 16  VEEEDTTSYQSKGVRIEDQTVYEPLRRLFADIFFPD---ETKGSSLFQRVKVSVAENGPA 75
           +EE    +  ++  R +D+T+   + RL ++I FPD   +T G+ L QR+K SVAENGP 
Sbjct: 1   MEENSNDTGANRAHRRDDETLNGVVHRLISEILFPDASGDTAGAPLLQRIKTSVAENGPL 60

Query: 76  VGQACRNFGRDVLCWTRRGSPLRAVLVISV 103
           + +A RN   +VL WTRRGSPLRA+LVISV
Sbjct: 61  LPEASRNTASNVLLWTRRGSPLRALLVISV 90

[Close]
BLAST of Cla009150 vs. TrEMBL
Match: A0A061EBA4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_016791 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-13
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 1 

Query: 33  DQTVYEPLRRLFADIFFPDETKGSS--LFQRVKVSVAENGPAVGQACRNFGRDVLCWTRR 92
           ++T+Y  L RL + I FPD +  +S  L QR+K+S++ENGP +G+A RN GR VL WTRR
Sbjct: 19  EETLYGVLHRLVSMIIFPDASSSASTPLLQRIKISISENGPHLGEASRNTGRAVLMWTRR 78

Query: 93  GSPLRAVLVISV-SITY 107
           GSP+RA+LVISV +IT+
Sbjct: 79  GSPIRALLVISVGTITF 95

[Close]
BLAST of Cla009150 vs. NCBI nr
Match: gi|449445067|ref|XP_004140295.1| (PREDICTED: uncharacterized protein LOC101212066 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 3.3e-38
Identity = 84/102 (82.35%), Postives = 90/102 (88.24%), Query Frame = 1 

Query: 1   MAEAYDSSDRNATVPVEEEDTTSYQSKGVRIEDQTVYEPLRRLFADIFFPDETKGSSLFQ 60
           MAEA+DS DRN TVPVEEED +S+QSKGV  EDQTVYEPLRRL A+IFFPDE KG SLF 
Sbjct: 1   MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKG-SLFH 60

Query: 61  RVKVSVAENGPAVGQACRNFGRDVLCWTRRGSPLRAVLVISV 103
           RVKVSV +NGPAV QACRNFGRDVL WTRRGSPLRA+LVISV
Sbjct: 61  RVKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISV 101

[Close]
BLAST of Cla009150 vs. NCBI nr
Match: gi|659126433|ref|XP_008463179.1| (PREDICTED: uncharacterized protein LOC103501388 [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 5.6e-38
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 1 

Query: 1   MAEAYDSSDRNATVPVEEEDTTSYQSKGVRIEDQTVYEPLRRLFADIFFPDETKGSSLFQ 60
           MAEA+DS  RN TVPVEEED +S+QSKG+ I+DQTVYEPLRRL A+IFFPDE KG SLF 
Sbjct: 1   MAEAHDSDARNTTVPVEEEDASSHQSKGLSIDDQTVYEPLRRLIAEIFFPDEIKG-SLFH 60

Query: 61  RVKVSVAENGPAVGQACRNFGRDVLCWTRRGSPLRAVLVISV 103
           RVKVSVA+NGPAVGQACRNFG DVL WTRRGSPLRA+LVISV
Sbjct: 61  RVKVSVADNGPAVGQACRNFGHDVLSWTRRGSPLRALLVISV 101

[Close]
BLAST of Cla009150 vs. NCBI nr
Match: gi|568869206|ref|XP_006487819.1| (PREDICTED: uncharacterized protein LOC102620494 [Citrus sinensis])

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-15
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 1 

Query: 4   AYDSSDRNAT-VPVEEEDTTSYQSKGVRIEDQTVYEPLRRLFADIFFPDETK---GSSLF 63
           +Y+S   N   VPV+++D T  + KG+  +D+T+Y  + R+F  I FPD        SL 
Sbjct: 6   SYESDGLNGVGVPVDDDDATK-KYKGIPCDDETLYGVIHRMFTMILFPDSNSRVASFSLL 65

Query: 64  QRVKVSVAENGPAVGQACRNFGRDVLCWTRRGSPLRAVLVISV 103
           +R+K+S++ENG  + QA RN GR VL WTRRGSP+RA+ VISV
Sbjct: 66  RRIKISLSENGSHLRQASRNTGRKVLLWTRRGSPIRALFVISV 107

[Close]
BLAST of Cla009150 vs. NCBI nr
Match: gi|357494357|ref|XP_003617467.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 89.7 bits (221), Expect = 3.9e-15
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 1 

Query: 1   MAEAYDSSDRNATVP---VEEEDTTSYQSKGVRIEDQTVYEPLRRLFADIFFPDETKGSS 60
           MAE  +S+  +  V     EEE+T + + +  +   QT+ E L RL + I FPD   G+S
Sbjct: 1   MAENSNSNGNSVHVEHEEEEEEETNNLKHRNTKPVKQTLPEVLNRLASTILFPDPADGTS 60

Query: 61  LFQRVKVSVAENGPAVGQACRNFGRDVLCWTRRGSPLRAVLVISV 103
           L +R+K SVA+N P + +A RN   DVL WTRRGSPLRA+LVISV
Sbjct: 61  LLRRIKNSVADNAPLIPEASRNSANDVLVWTRRGSPLRALLVISV 105

[Close]
BLAST of Cla009150 vs. NCBI nr
Match: gi|567862776|ref|XP_006424042.1| (hypothetical protein CICLE_v10029179mg [Citrus clementina])

HSP 1 Score: 88.6 bits (218), Expect = 8.6e-15
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1 

Query: 4   AYDSSDRNAT-----VPVEEEDTTSYQSKGVRIEDQTVYEPLRRLFADIFFPDETK---G 63
           +Y+S   N       VPV+++D T  + KG+  +D+T+Y  + R+F  I FPD       
Sbjct: 6   SYESDGLNGVGVGVGVPVDDDDATK-KYKGIPCDDETLYGVIHRMFTMILFPDSNSRVAS 65

Query: 64  SSLFQRVKVSVAENGPAVGQACRNFGRDVLCWTRRGSPLRAVLVISV 103
            SL +R+K+S++ENG  + QA RN GR VL WTRRGSP+RA+ VISV
Sbjct: 66  FSLLRRIKISLSENGSHLRQASRNTGRKVLLWTRRGSPIRALFVISV 111

The following BLAST results are available for this feature:
BLAST of Cla009150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNC3_CUCSA2.3e-3882.35Uncharacterized protein OS=Cucumis sativus GN=Csa_5G427940 PE=4 SV=1[more]
G7K3E8_MEDTR2.7e-1547.62Transmembrane protein, putative OS=Medicago truncatula GN=MTR_5g091900 PE=2 SV=1[more]
V4SA05_9ROSI6.0e-1544.86Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029179mg PE=4 SV=1[more]
W9S3F9_9ROSA1.1e-1348.89Uncharacterized protein OS=Morus notabilis GN=L484_007805 PE=4 SV=1[more]
A0A061EBA4_THECC1.5e-1355.84Uncharacterized protein OS=Theobroma cacao GN=TCM_016791 PE=4 SV=1[more]
BLAST of Cla009150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445067|ref|XP_004140295.1|3.3e-3882.35PREDICTED: uncharacterized protein LOC101212066 [Cucumis sativus][more]
gi|659126433|ref|XP_008463179.1|5.6e-3881.37PREDICTED: uncharacterized protein LOC103501388 [Cucumis melo][more]
gi|568869206|ref|XP_006487819.1|3.0e-1546.60PREDICTED: uncharacterized protein LOC102620494 [Citrus sinensis][more]
gi|357494357|ref|XP_003617467.1|3.9e-1547.62transmembrane protein, putative [Medicago truncatula][more]
gi|567862776|ref|XP_006424042.1|8.6e-1544.86hypothetical protein CICLE_v10029179mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU29525watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009150Cla009150.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU29525WMU29525transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35508FAMILY NOT NAMEDcoord: 16..104
score: 4.9
NoneNo IPR availablePANTHERPTHR35508:SF1SUBFAMILY NOT NAMEDcoord: 16..104
score: 4.9