Cla009136 (gene) Watermelon (97103) v1

Overview
NameCla009136
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 23067860 .. 23068213 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGAAGATCAAAGTATTAATCGAGGAAGGAAAACCTCATCCTTTTTAAAGGGCAAAAGCCCAACCTCTTCAAGCTCAACACCCGCTCCAATGAGTGCTGATCAATATGTGATGGAATTAGGGTTTACCACGGTAACTCGATTCAGAGCAAGATCCTTTGATATTCGGATAAGATCTCCAATGGAGTCATCTACTCCACTTTCAAGGCCTTCGACCAACTTTGTCAACCCTTCTGGTGGATTAGTTCAATTAAGGCCTACTGCCTTTCCATCTTCATATCAGGGATCATCAATCCCTTCTCCTTCAAATTTTTCTCAGGCAGCTGCATTGGAAAAGAGATTTGTTCCCTGA

mRNA sequence

ATGAGCGAAGATCAAAGTATTAATCGAGGAAGGAAAACCTCATCCTTTTTAAAGGGCAAAAGCCCAACCTCTTCAAGCTCAACACCCGCTCCAATGAGTGCTGATCAATATGTGATGGAATTAGGGTTTACCACGGTAACTCGATTCAGAGCAAGATCCTTTGATATTCGGATAAGATCTCCAATGGAGTCATCTACTCCACTTTCAAGGCCTTCGACCAACTTTGTCAACCCTTCTGGTGGATTAGTTCAATTAAGGCCTACTGCCTTTCCATCTTCATATCAGGGATCATCAATCCCTTCTCCTTCAAATTTTTCTCAGGCAGCTGCATTGGAAAAGAGATTTGTTCCCTGA

Coding sequence (CDS)

ATGAGCGAAGATCAAAGTATTAATCGAGGAAGGAAAACCTCATCCTTTTTAAAGGGCAAAAGCCCAACCTCTTCAAGCTCAACACCCGCTCCAATGAGTGCTGATCAATATGTGATGGAATTAGGGTTTACCACGGTAACTCGATTCAGAGCAAGATCCTTTGATATTCGGATAAGATCTCCAATGGAGTCATCTACTCCACTTTCAAGGCCTTCGACCAACTTTGTCAACCCTTCTGGTGGATTAGTTCAATTAAGGCCTACTGCCTTTCCATCTTCATATCAGGGATCATCAATCCCTTCTCCTTCAAATTTTTCTCAGGCAGCTGCATTGGAAAAGAGATTTGTTCCCTGA

Protein sequence

MSEDQSINRGRKTSSFLKGKSPTSSSSTPAPMSADQYVMELGFTTVTRFRARSFDIRIRSPMESSTPLSRPSTNFVNPSGGLVQLRPTAFPSSYQGSSIPSPSNFSQAAALEKRFVP
Homology
[Close]
BLAST of Cla009136 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.5e-24
Identity = 67/118 (56.78%), Postives = 82/118 (69.49%), Query Frame = 1 

Query: 1   MSEDQSINRGRKTSSFLKGKSPTSSS-STPAPMSADQYVMELGFTTVTRFRARSFDIRIR 60
           MS ++   RGR  S+  KG  P+SSS S P+PMSA QY M+LGFT VTR R+R   I I 
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SPMESSTPLSRPSTNFVNPSGGLVQLRPTAFPSSYQGSSIPSPSNFSQAAALEKRFVP 118
           SP ESSTP  RPS N + PSGG++Q+RP A PSS + SS P P+ +SQA  L+KRFVP
Sbjct: 61  SPTESSTP-PRPSVNLIRPSGGVIQMRPPASPSSNRESSTP-PTTYSQAVTLDKRFVP 116

[Close]
BLAST of Cla009136 vs. TrEMBL
Match: A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-15
Identity = 56/108 (51.85%), Postives = 71/108 (65.74%), Query Frame = 1 

Query: 1   MSEDQSINRGRKTSSFLKGKSPTSSSS-TPAPMSADQYVMELGFTTVTRFRARSFDIRI- 60
           MS ++   RGR  S   +G  P+S S+  P+PMSADQY M LGFTTVT  RARS DI+I 
Sbjct: 3   MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62

Query: 61  RSPMESSTPLSRPSTNFVNPSGGLVQLRPTAFPSSYQGSSIPSPSNFS 107
            +  ESSTP  RPSTN + PSG ++Q RP+A   S + SS P P+ +S
Sbjct: 63  YNSTESSTP-PRPSTNLIRPSGEVIQTRPSASSLSNRDSS-PPPTTYS 108

[Close]
BLAST of Cla009136 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 118.2 bits (295), Expect = 9.4e-24
Identity = 67/118 (56.78%), Postives = 82/118 (69.49%), Query Frame = 1 

Query: 1   MSEDQSINRGRKTSSFLKGKSPTSSS-STPAPMSADQYVMELGFTTVTRFRARSFDIRIR 60
           MS ++   RGR  S+  KG  P+SSS S P+PMSA QY M+LGFT VTR R+R   I I 
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61  SPMESSTPLSRPSTNFVNPSGGLVQLRPTAFPSSYQGSSIPSPSNFSQAAALEKRFVP 118
           SP ESSTP  RPS N + PSGG++Q+RP A PSS + SS P P+ +SQA  L+KRFVP
Sbjct: 61  SPTESSTP-PRPSVNLIRPSGGVIQMRPPASPSSNRESSTP-PTTYSQAVTLDKRFVP 116

[Close]
BLAST of Cla009136 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 5.1e-22
Identity = 64/118 (54.24%), Postives = 80/118 (67.80%), Query Frame = 1 

Query: 1   MSEDQSINRGRKTSSFLKGKSPTSSSS-TPAPMSADQYVMELGFTTVTRFRARSFDIRIR 60
           MS ++   RGR  S+  KG  P+SSS+  P+PMSADQY M+L FTT+TR R+RS  IRI 
Sbjct: 1   MSSEKGSARGRTNSTSSKGNRPSSSSNFAPSPMSADQYAMDLEFTTITRSRSRSSGIRIG 60

Query: 61  SPMESSTPLSRPSTNFVNPSGGLVQLRPTAFPSSYQGSSIPSPSNFSQAAALEKRFVP 118
           SP ESSTP  RPS N +  S G+VQ+RP A PSS + SS P P+ +S     +KRFVP
Sbjct: 61  SPTESSTP-PRPSANLIRLSDGVVQMRPHASPSSNRESSTP-PTTYSHTVTPDKRFVP 116

[Close]
BLAST of Cla009136 vs. NCBI nr
Match: gi|700189415|gb|KGN44648.1| (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 4.7e-15
Identity = 56/108 (51.85%), Postives = 71/108 (65.74%), Query Frame = 1 

Query: 1   MSEDQSINRGRKTSSFLKGKSPTSSSS-TPAPMSADQYVMELGFTTVTRFRARSFDIRI- 60
           MS ++   RGR  S   +G  P+S S+  P+PMSADQY M LGFTTVT  RARS DI+I 
Sbjct: 3   MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62

Query: 61  RSPMESSTPLSRPSTNFVNPSGGLVQLRPTAFPSSYQGSSIPSPSNFS 107
            +  ESSTP  RPSTN + PSG ++Q RP+A   S + SS P P+ +S
Sbjct: 63  YNSTESSTP-PRPSTNLIRPSGEVIQTRPSASSLSNRDSS-PPPTTYS 108

The following BLAST results are available for this feature:
BLAST of Cla009136 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCE6_CUCME6.5e-2456.78Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0K595_CUCSA3.2e-1551.85Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1[more]
BLAST of Cla009136 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136323|gb|ADN34145.1|9.4e-2456.78hypothetical protein [Cucumis melo subsp. melo][more]
gi|659098578|ref|XP_008450208.1|5.1e-2254.24PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|700189415|gb|KGN44648.1|4.7e-1551.85hypothetical protein Csa_7G361530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009136Cla009136.1mRNA