Cla009121 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla009121
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ty3-gypsy retrotransposon protein (AHRD V1 ***- E5GBB0_CUCME)
Location	Chr1 : 22805292 .. 22805744 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCCAAAGACAATGCTCCTAATGCTTCAAGTGACACTTCCAGAAGACCGATTACCCGCAGTCGCTCTAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCGCGAGAAATATATGGGAACGGATCTCAAGAAACCCGAAAGCTGGGGTCGTCATCAAAGAGAATCCTACACTTGACAAGCATACCTCAGCTTCTGAACGACCAAGCGAGGAGGCATCCCAACCAAATGTAATGTTAGTCATGATGGCTGACATGGGAACAAGTGAGGAGAGAATGGCTGAACTTGAAAAGAAGGTTAGCATGCTACTGAAGGCAGTTGAAGAAAGGGATTATGAGATTGCATCCCTCAAGAACCATATTGAAAGTCGTGACGCAGTTGAATCGAGTCATACGCCCGCAGTCAAGAGCAATGACAAAGGGAAGAAGGTTTTGCAAGACAGTTAG

mRNA sequence

ATGGCATCCAAAGACAATGCTCCTAATGCTTCAAGTGACACTTCCAGAAGACCGATTACCCGCAGTCGCTCTAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCGCGAGAAATATATGGGAACGGATCTCAAGAAACCCGAAAGCTGGGGTCGTCATCAAAGAGAATCCTACACTTGACAAGCATACCTCAGCTTCTGAACGACCAAGCGAGGAGGCATCCCAACCAAATGTAATGTTAGTCATGATGGCTGACATGGGAACAAGTGAGGAGAGAATGGCTGAACTTGAAAAGAAGGTTAGCATGCTACTGAAGGCAGTTGAAGAAAGGGATTATGAGATTGCATCCCTCAAGAACCATATTGAAAGTCGTGACGCAGTTGAATCGAGTCATACGCCCGCAGTCAAGAGCAATGACAAAGGGAAGAAGGTTTTGCAAGACAGTTAG

Coding sequence (CDS)

ATGGCATCCAAAGACAATGCTCCTAATGCTTCAAGTGACACTTCCAGAAGACCGATTACCCGCAGTCGCTCTAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCGCGAGAAATATATGGGAACGGATCTCAAGAAACCCGAAAGCTGGGGTCGTCATCAAAGAGAATCCTACACTTGACAAGCATACCTCAGCTTCTGAACGACCAAGCGAGGAGGCATCCCAACCAAATGTAATGTTAGTCATGATGGCTGACATGGGAACAAGTGAGGAGAGAATGGCTGAACTTGAAAAGAAGGTTAGCATGCTACTGAAGGCAGTTGAAGAAAGGGATTATGAGATTGCATCCCTCAAGAACCATATTGAAAGTCGTGACGCAGTTGAATCGAGTCATACGCCCGCAGTCAAGAGCAATGACAAAGGGAAGAAGGTTTTGCAAGACAGTTAG

Protein sequence

MASKDNAPNASSDTSRRPITRSRSKEIQLEEQPTFEIARNIWERISRNPKAGVVIKENPTLDKHTSASERPSEEASQPNVMLVMMADMGTSEERMAELEKKVSMLLKAVEERDYEIASLKNHIESRDAVESSHTPAVKSNDKGKKVLQDS

Homology

[Close]

BLAST of Cla009121 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.6e-38
Identity = 83/133 (62.41%), Postives = 103/133 (77.44%), Query Frame = 1


Query: 1   MASKDNAPNASSDTSRRPITRSRSKEIQL-EEQPTFEIARNIWERISRNPKAGVVIKENP 60
           M S+ N   A SD  +RP TRS S+EIQ  E+   FE+A+NIWE+IS+ PK G++IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  TLDKHTSASERPSEEASQPNVMLVMMADMGTSEERMAELEKKVSMLLKAVEERDYEIASL 120
            +DKH S SE  +EEA QPN+M VM+ D+ TSE RM ELEKKV+ML+KAVEERD++IASL
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASL 120

Query: 121 KNHIESRDAVESS 133
           KNHIESRD  ES+
Sbjct: 121 KNHIESRDTAEST 133

[Close]

BLAST of Cla009121 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 54/144 (37.50%), Postives = 95/144 (65.97%), Query Frame = 1


Query: 9   NASSDTSRRPITRSRSKEI--QLEEQPTFEIARNIWERISRNPKAGVVIKENPTLDKHTS 68
           + +SD+    +T+S  K    + E++  F + +   E++  +PK G++I++NP  +  T 
Sbjct: 11  SVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNSTP 70

Query: 69  ASERPSEEASQPNVMLVMMADMGTSEERMAELEKKVSMLLKAVEERDYEIASLKNHIESR 128
           AS   S++AS   V+ VMM D+ T+E  + E+E+K++ L+K +EERD+EIA+LK+ +++ 
Sbjct: 71  ASNL-SDKASHLEVVSVMMVDV-TAEATVTEMERKINFLMKVIEERDHEIAALKDQMKAC 130

Query: 129 DAVESSHTPAVKSNDKGKKVLQDS 151
           +  ESS TP VK+ DKGK V+Q++
Sbjct: 131 ETGESSQTPVVKATDKGKNVVQEN 152

[Close]

BLAST of Cla009121 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 48/117 (41.03%), Postives = 78/117 (66.67%), Query Frame = 1


Query: 30  EEQPTFEIARNIWERISRNPKAGVVIKENPTLDKHTSASERPSEEASQPNVMLVMMADMG 89
           E++  F + +   E++  + K G++I++NP  +  T  S   S++ S   V+ VMM D+ 
Sbjct: 3   EQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNL-SDKESHLEVVSVMMIDV- 62

Query: 90  TSEERMAELEKKVSMLLKAVEERDYEIASLKNHIESRDAVESSHTPAVKSNDKGKKV 147
           T+E  MAE+EKK++ L+K VEERD+EIA+LK+ +++ ++ ESS T  VK+ DKGK V
Sbjct: 63  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNV 117

[Close]

BLAST of Cla009121 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1


Query: 12  SDTSRRPITRSRSKEIQLEEQPTFEIARNIWERISRNPKAGVVIKENPTLDKHTSASERP 71
           +DT  R I +S SK    +++    +A+  WE++  +PK G++IKENP  +  T AS   
Sbjct: 14  NDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKENPLFEDSTPASNL- 73

Query: 72  SEEASQPNVMLVMMADMGTSEERMAELEKKVSMLLKAVEERDYEIASL 120
           SE+ S   V+ +MMAD+ T E  M E+E K++ L+K VEERDY I  L
Sbjct: 74  SEKESHLEVVSIMMADV-TVEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]

BLAST of Cla009121 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-10
Identity = 43/125 (34.40%), Postives = 78/125 (62.40%), Query Frame = 1


Query: 1   MASKDNAPNASSDTSRRPITRSRSKEIQLEEQPTFEIARNIWERISRNPKAGVVIKENPT 60
           +ASK    N   D+    +T+S SK    E++ +  + +  WE++  +PK G+ I+ENP 
Sbjct: 6   VASKATVTN---DSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIRENPL 65

Query: 61  LDKHTSASERPSEEASQPNVMLVMMADMGTSEERMAELEKKVSMLLKAVEERDYEIASLK 120
            +  T AS   S++ S   V+ V+MA + T+E  M E+E+K++ L+KAV++RD+EI +L+
Sbjct: 66  FNNSTPASNL-SDKESHLEVVSVIMAAV-TAETTMVEMERKINFLMKAVKDRDHEITALE 125

Query: 121 NHIES 126
           + +++
Sbjct: 126 DQMKA 125

[Close]

BLAST of Cla009121 vs. NCBI nr
Match: gi|307135887|gb|ADN33752.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 165.6 bits (418), Expect = 6.6e-38
Identity = 83/133 (62.41%), Postives = 103/133 (77.44%), Query Frame = 1


Query: 1   MASKDNAPNASSDTSRRPITRSRSKEIQL-EEQPTFEIARNIWERISRNPKAGVVIKENP 60
           M S+ N   A SD  +RP TRS S+EIQ  E+   FE+A+NIWE+IS+ PK G++IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  TLDKHTSASERPSEEASQPNVMLVMMADMGTSEERMAELEKKVSMLLKAVEERDYEIASL 120
            +DKH S SE  +EEA QPN+M VM+ D+ TSE RM ELEKKV+ML+KAVEERD++IASL
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASL 120

Query: 121 KNHIESRDAVESS 133
           KNHIESRD  ES+
Sbjct: 121 KNHIESRDTAEST 133

[Close]

BLAST of Cla009121 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 54/144 (37.50%), Postives = 95/144 (65.97%), Query Frame = 1


Query: 9   NASSDTSRRPITRSRSKEI--QLEEQPTFEIARNIWERISRNPKAGVVIKENPTLDKHTS 68
           + +SD+    +T+S  K    + E++  F + +   E++  +PK G++I++NP  +  T 
Sbjct: 11  SVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNSTP 70

Query: 69  ASERPSEEASQPNVMLVMMADMGTSEERMAELEKKVSMLLKAVEERDYEIASLKNHIESR 128
           AS   S++AS   V+ VMM D+ T+E  + E+E+K++ L+K +EERD+EIA+LK+ +++ 
Sbjct: 71  ASNL-SDKASHLEVVSVMMVDV-TAEATVTEMERKINFLMKVIEERDHEIAALKDQMKAC 130

Query: 129 DAVESSHTPAVKSNDKGKKVLQDS 151
           +  ESS TP VK+ DKGK V+Q++
Sbjct: 131 ETGESSQTPVVKATDKGKNVVQEN 152

[Close]

BLAST of Cla009121 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 48/117 (41.03%), Postives = 78/117 (66.67%), Query Frame = 1


Query: 30  EEQPTFEIARNIWERISRNPKAGVVIKENPTLDKHTSASERPSEEASQPNVMLVMMADMG 89
           E++  F + +   E++  + K G++I++NP  +  T  S   S++ S   V+ VMM D+ 
Sbjct: 3   EQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNL-SDKESHLEVVSVMMIDV- 62

Query: 90  TSEERMAELEKKVSMLLKAVEERDYEIASLKNHIESRDAVESSHTPAVKSNDKGKKV 147
           T+E  MAE+EKK++ L+K VEERD+EIA+LK+ +++ ++ ESS T  VK+ DKGK V
Sbjct: 63  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNV 117

[Close]

BLAST of Cla009121 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 80.9 bits (198), Expect = 2.1e-12
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1


Query: 12  SDTSRRPITRSRSKEIQLEEQPTFEIARNIWERISRNPKAGVVIKENPTLDKHTSASERP 71
           +DT  R I +S SK    +++    +A+  WE++  +PK G++IKENP  +  T AS   
Sbjct: 14  NDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKENPLFEDSTPASNL- 73

Query: 72  SEEASQPNVMLVMMADMGTSEERMAELEKKVSMLLKAVEERDYEIASL 120
           SE+ S   V+ +MMAD+ T E  M E+E K++ L+K VEERDY I  L
Sbjct: 74  SEKESHLEVVSIMMADV-TVEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]

BLAST of Cla009121 vs. NCBI nr
Match: gi|659118742|ref|XP_008459280.1| (PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 2.4e-11
Identity = 38/100 (38.00%), Postives = 69/100 (69.00%), Query Frame = 1


Query: 39  RNIWERISRNPKAGVVIKENPTLDKHTSASERPSEEASQPNVMLVMMADMGTSEERMAEL 98
           ++I +++  +PKAG+ IKENP  D   SA  +  +EA  P+VM VMM D+ T+E  M E+
Sbjct: 2   QSILKQLMLSPKAGIFIKENPLYDNFDSALSKLKKEA-HPDVMSVMMVDI-TAEAAMTEM 61

Query: 99  EKKVSMLLKAVEERDYEIASLKNHIESRDAVESSHTPAVK 139
           E+K+++++K V+E+D++I +L+  ++  +  +SS TP ++
Sbjct: 62  ERKINLVMKVVKEQDHKITALREQMQIHETTKSSQTPQLQ 99

The following BLAST results are available for this feature:

BLAST of Cla009121 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB0_CUCME	4.6e-38	62.41	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCP6_CUCME	1.8e-18	37.50	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GB67_CUCME	1.4e-15	41.03	Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCM2_CUCME	1.5e-12	41.67	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCE3_CUCME	1.1e-10	34.40	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla009121 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135887\|gb\|ADN33752.1\|	6.6e-38	62.41	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307136441\|gb\|ADN34247.1\|	2.6e-18	37.50	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307135838\|gb\|ADN33709.1\|	2.1e-15	41.03	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
gi\|307136413\|gb\|ADN34221.1\|	2.1e-12	41.67	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659118742\|ref\|XP_008459280.1\|	2.4e-11	38.00	PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla009121	Cla009121.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla009121	Cucumber (Chinese Long) v3	cucwmB437
Cla009121	Watermelon (97103) v2	wmwmbB237
Cla009121	Wax gourd	wgowmB078
Cla009121	Cucumber (Gy14) v1	cgywmB330
Cla009121	Cucurbita maxima (Rimu)	cmawmB279
Cla009121	Cucurbita maxima (Rimu)	cmawmB711
Cla009121	Cucurbita moschata (Rifu)	cmowmB269
Cla009121	Cucurbita moschata (Rifu)	cmowmB707
Cla009121	Melon (DHL92) v3.5.1	mewmB026
Cla009121	Melon (DHL92) v3.5.1	mewmB032
Cla009121	Watermelon (Charleston Gray)	wcgwmB144
Cla009121	Cucumber (Chinese Long) v2	cuwmB412
Cla009121	Cucurbita pepo (Zucchini)	cpewmB185
Cla009121	Cucurbita pepo (Zucchini)	cpewmB441
Cla009121	Bottle gourd (USVL1VR-Ls)	lsiwmB029
Cla009121	Cucumber (Gy14) v2	cgybwmB385
Cla009121	Melon (DHL92) v3.6.1	medwmB023
Cla009121	Melon (DHL92) v3.6.1	medwmB031
Cla009121	Silver-seed gourd	carwmB0524
Cla009121	Silver-seed gourd	carwmB0831