Cla009113 (gene) Watermelon (97103) v1

Overview
NameCla009113
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTy3-gypsy retrotransposon protein (AHRD V1 ***- E5GBB0_CUCME)
LocationChr1 : 22655901 .. 22656401 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCCAAAGACAATGCTTCTAACGCTTCAAGTGACACTTTCAGAAGACCGATTACACCCAGCCGCTATAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCGCGAGAAATATATGGGAACGGATCTCAAGAGACCCGAAACCTGGAGTCGTTATCAAGGAGAATCCTACACTTGACAAGCATACCTCAGCTTCTGAACAACCAAGCGAGGAGGCATCCCAACCAAATGTAACGTCAGTCATGATGGCTGACGTGGGAACAAGTGAGGAGAGAATGGCTGAACTTGAAAAGAAAGTTAACATGTTACTGAAGGTAGTTGAAGAAAGGGATTATGAGATTGCATCCCTCAAGAACCATATTGAAAGTCGTGACGCGGCTGAATCAAGTCATACGCCCGCAGTCAAGAGTAATGACAAAGGGAAGAAGGTTTTGCAAGACAGTCAGCCCCAAGATTTAACTTCAATTGCTTTGTTGTCTGTTCAACAGTTGTAG

mRNA sequence

ATGACATCCAAAGACAATGCTTCTAACGCTTCAAGTGACACTTTCAGAAGACCGATTACACCCAGCCGCTATAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCGCGAGAAATATATGGGAACGGATCTCAAGAGACCCGAAACCTGGAGTCGTTATCAAGGAGAATCCTACACTTGACAAGCATACCTCAGCTTCTGAACAACCAAGCGAGGAGGCATCCCAACCAAATGTAACGTCAGTCATGATGGCTGACGTGGGAACAAGTGAGGAGAGAATGGCTGAACTTGAAAAGAAAGTTAACATGTTACTGAAGGTAGTTGAAGAAAGGGATTATGAGATTGCATCCCTCAAGAACCATATTGAAAGTCGTGACGCGGCTGAATCAAGTCATACGCCCGCAGTCAAGAGTAATGACAAAGGGAAGAAGGTTTTGCAAGACAGTCAGCCCCAAGATTTAACTTCAATTGCTTTGTTGTCTGTTCAACAGTTGTAG

Coding sequence (CDS)

ATGACATCCAAAGACAATGCTTCTAACGCTTCAAGTGACACTTTCAGAAGACCGATTACACCCAGCCGCTATAAGGAAATACAATTGGAAGAGCAACCTACCTTTGAGATCGCGAGAAATATATGGGAACGGATCTCAAGAGACCCGAAACCTGGAGTCGTTATCAAGGAGAATCCTACACTTGACAAGCATACCTCAGCTTCTGAACAACCAAGCGAGGAGGCATCCCAACCAAATGTAACGTCAGTCATGATGGCTGACGTGGGAACAAGTGAGGAGAGAATGGCTGAACTTGAAAAGAAAGTTAACATGTTACTGAAGGTAGTTGAAGAAAGGGATTATGAGATTGCATCCCTCAAGAACCATATTGAAAGTCGTGACGCGGCTGAATCAAGTCATACGCCCGCAGTCAAGAGTAATGACAAAGGGAAGAAGGTTTTGCAAGACAGTCAGCCCCAAGATTTAACTTCAATTGCTTTGTTGTCTGTTCAACAGTTGTAG

Protein sequence

MTSKDNASNASSDTFRRPITPSRYKEIQLEEQPTFEIARNIWERISRDPKPGVVIKENPTLDKHTSASEQPSEEASQPNVTSVMMADVGTSEERMAELEKKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTPAVKSNDKGKKVLQDSQPQDLTSIALLSVQQL
Homology
[Close]
BLAST of Cla009113 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.0e-38
Identity = 90/161 (55.90%), Postives = 113/161 (70.19%), Query Frame = 1 

Query: 1   MTSKDNASNASSDTFRRPITPSRYKEIQL-EEQPTFEIARNIWERISRDPKPGVVIKENP 60
           MTS+ N S A SD  +RP T S  +EIQ  E+   FE+A+NIWE+IS+ PK G++IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  TLDKHTSASEQPSEEASQPNVTSVMMADVGTSEERMAELEKKVNMLLKVVEERDYEIASL 120
            +DKH S SE  +EEA QPN+ SVM+ DV TSE RM ELEKKVNML+K VEERD++IASL
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASL 120

Query: 121 KNHIESRDAAESSHTPAVKSNDKG-KKVLQDSQPQDLTSIA 160
           KNHIESRD AES+     +    G   +LQ  +P+    +A
Sbjct: 121 KNHIESRDTAESTVEMCTQGMHWGLLYILQGIKPRTFEELA 161

[Close]
BLAST of Cla009113 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.6e-26
Identity = 70/162 (43.21%), Postives = 109/162 (67.28%), Query Frame = 1 

Query: 8   SNASSDTFRRPITPSRYKEI--QLEEQPTFEIARNIWERISRDPKPGVVIKENPTLDKHT 67
           S+ +SD++   +T S  K    + E++  F + +   E++   PK G++I++NP  +  T
Sbjct: 10  SSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNST 69

Query: 68  SASEQPSEEASQPNVTSVMMADVGTSEERMAELEKKVNMLLKVVEERDYEIASLKNHIES 127
            AS   S++AS   V SVMM DV T+E  + E+E+K+N L+KV+EERD+EIA+LK+ +++
Sbjct: 70  PASNL-SDKASHLEVVSVMMVDV-TAEATVTEMERKINFLMKVIEERDHEIAALKDQMKA 129

Query: 128 RDAAESSHTPAVKSNDKGKKVLQDSQPQDLT-SIALLSVQQL 167
            +  ESS TP VK+ DKGK V+Q++QPQ  + S+A LSVQQL
Sbjct: 130 CETGESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQL 169

[Close]
BLAST of Cla009113 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 53/117 (45.30%), Postives = 79/117 (67.52%), Query Frame = 1 

Query: 30  EEQPTFEIARNIWERISRDPKPGVVIKENPTLDKHTSASEQPSEEASQPNVTSVMMADVG 89
           E++  F + +   E++    K G++I++NP  +  T  S   S++ S   V SVMM DV 
Sbjct: 3   EQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNL-SDKESHLEVVSVMMIDV- 62

Query: 90  TSEERMAELEKKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTPAVKSNDKGKKV 147
           T+E  MAE+EKK+N L+KVVEERD+EIA+LK+ +++ ++AESS T  VK+ DKGK V
Sbjct: 63  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNV 117

[Close]
BLAST of Cla009113 vs. TrEMBL
Match: E5GCM2_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 1 

Query: 12  SDTFRRPITPSRYKEIQLEEQPTFEIARNIWERISRDPKPGVVIKENPTLDKHTSASEQP 71
           +DT+ R I  S  K    +++    +A+  WE++   PK G++IKENP  +  T AS   
Sbjct: 14  NDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKENPLFEDSTPASNL- 73

Query: 72  SEEASQPNVTSVMMADVGTSEERMAELEKKVNMLLKVVEERDYEIASL 120
           SE+ S   V S+MMADV T E  M E+E K+N L+KVVEERDY I  L
Sbjct: 74  SEKESHLEVVSIMMADV-TVEAVMVEMEMKINFLMKVVEERDYGITVL 119

[Close]
BLAST of Cla009113 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 42/123 (34.15%), Postives = 75/123 (60.98%), Query Frame = 1 

Query: 8   SNASSDTFRRPITPSRYKEIQLEEQPTFEIARNIWERISRDPKPGVVIKENPTLDKHTSA 67
           +  ++D++   +T S  K    E++ +  + +  WE++   PK G+ I+ENP  +  T A
Sbjct: 10  ATVTNDSYTGLVTQSHSKRSIQEQEQSSVLKKKSWEQLIESPKGGINIRENPLFNNSTPA 69

Query: 68  SEQPSEEASQPNVTSVMMADVGTSEERMAELEKKVNMLLKVVEERDYEIASLKNHIESRD 127
           S   S++ S   V SV+MA V T+E  M E+E+K+N L+K V++RD+EI +L++ +++  
Sbjct: 70  SNL-SDKESHLEVVSVIMAAV-TAETTMVEMERKINFLMKAVKDRDHEITALEDQMKACV 129

Query: 128 AAE 131
            AE
Sbjct: 130 TAE 130

[Close]
BLAST of Cla009113 vs. NCBI nr
Match: gi|307135887|gb|ADN33752.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 166.4 bits (420), Expect = 4.3e-38
Identity = 90/161 (55.90%), Postives = 113/161 (70.19%), Query Frame = 1 

Query: 1   MTSKDNASNASSDTFRRPITPSRYKEIQL-EEQPTFEIARNIWERISRDPKPGVVIKENP 60
           MTS+ N S A SD  +RP T S  +EIQ  E+   FE+A+NIWE+IS+ PK G++IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSCSREIQSSEDMLPFEVAKNIWEQISKPPKGGIIIKENP 60

Query: 61  TLDKHTSASEQPSEEASQPNVTSVMMADVGTSEERMAELEKKVNMLLKVVEERDYEIASL 120
            +DKH S SE  +EEA QPN+ SVM+ DV TSE RM ELEKKVNML+K VEERD++IASL
Sbjct: 61  AIDKHNSLSEHSNEEAPQPNIMSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASL 120

Query: 121 KNHIESRDAAESSHTPAVKSNDKG-KKVLQDSQPQDLTSIA 160
           KNHIESRD AES+     +    G   +LQ  +P+    +A
Sbjct: 121 KNHIESRDTAESTVEMCTQGMHWGLLYILQGIKPRTFEELA 161

[Close]
BLAST of Cla009113 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 70/162 (43.21%), Postives = 109/162 (67.28%), Query Frame = 1 

Query: 8   SNASSDTFRRPITPSRYKEI--QLEEQPTFEIARNIWERISRDPKPGVVIKENPTLDKHT 67
           S+ +SD++   +T S  K    + E++  F + +   E++   PK G++I++NP  +  T
Sbjct: 10  SSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNST 69

Query: 68  SASEQPSEEASQPNVTSVMMADVGTSEERMAELEKKVNMLLKVVEERDYEIASLKNHIES 127
            AS   S++AS   V SVMM DV T+E  + E+E+K+N L+KV+EERD+EIA+LK+ +++
Sbjct: 70  PASNL-SDKASHLEVVSVMMVDV-TAEATVTEMERKINFLMKVIEERDHEIAALKDQMKA 129

Query: 128 RDAAESSHTPAVKSNDKGKKVLQDSQPQDLT-SIALLSVQQL 167
            +  ESS TP VK+ DKGK V+Q++QPQ  + S+A LSVQQL
Sbjct: 130 CETGESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQL 169

[Close]
BLAST of Cla009113 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-17
Identity = 53/117 (45.30%), Postives = 79/117 (67.52%), Query Frame = 1 

Query: 30  EEQPTFEIARNIWERISRDPKPGVVIKENPTLDKHTSASEQPSEEASQPNVTSVMMADVG 89
           E++  F + +   E++    K G++I++NP  +  T  S   S++ S   V SVMM DV 
Sbjct: 3   EQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNL-SDKESHLEVVSVMMIDV- 62

Query: 90  TSEERMAELEKKVNMLLKVVEERDYEIASLKNHIESRDAAESSHTPAVKSNDKGKKV 147
           T+E  MAE+EKK+N L+KVVEERD+EIA+LK+ +++ ++AESS T  VK+ DKGK V
Sbjct: 63  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNV 117

[Close]
BLAST of Cla009113 vs. NCBI nr
Match: gi|659074577|ref|XP_008437679.1| (PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 5.1e-15
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 1 

Query: 106 LKVVEERDYEIASLKNHIESRDAAESSHTPAVKSNDKGKKVLQDSQPQDLTSIALLSVQQ 165
           +K VEERD+EIA LKNHIESRDAAESSHT  +K+ +KGK ++Q+SQPQ+ TSIA LSVQQ
Sbjct: 1   MKAVEERDFEIALLKNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQ 60

Query: 166 L 167
           L
Sbjct: 61  L 61

[Close]
BLAST of Cla009113 vs. NCBI nr
Match: gi|307136413|gb|ADN34221.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 1 

Query: 12  SDTFRRPITPSRYKEIQLEEQPTFEIARNIWERISRDPKPGVVIKENPTLDKHTSASEQP 71
           +DT+ R I  S  K    +++    +A+  WE++   PK G++IKENP  +  T AS   
Sbjct: 14  NDTYTRLIVQSHSKRSTQKQEQNSVLAKKSWEQLMESPKCGIIIKENPLFEDSTPASNL- 73

Query: 72  SEEASQPNVTSVMMADVGTSEERMAELEKKVNMLLKVVEERDYEIASL 120
           SE+ S   V S+MMADV T E  M E+E K+N L+KVVEERDY I  L
Sbjct: 74  SEKESHLEVVSIMMADV-TVEAVMVEMEMKINFLMKVVEERDYGITVL 119

The following BLAST results are available for this feature:
BLAST of Cla009113 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB0_CUCME3.0e-3855.90Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCP6_CUCME7.6e-2643.21Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GB67_CUCME1.3e-1745.30Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCM2_CUCME1.1e-1344.44Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCE3_CUCME2.4e-1134.15Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cla009113 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135887|gb|ADN33752.1|4.3e-3855.90ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307136441|gb|ADN34247.1|1.1e-2543.21ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307135838|gb|ADN33709.1|1.9e-1745.30retrotransposon gag protein [Cucumis melo subsp. melo][more]
gi|659074577|ref|XP_008437679.1|5.1e-1572.13PREDICTED: uncharacterized protein LOC103483019 [Cucumis melo][more]
gi|307136413|gb|ADN34221.1|1.6e-1344.44hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009113Cla009113.1mRNA