Cla009111 (gene) Watermelon (97103) v1

Overview
NameCla009111
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 22625287 .. 22626180 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGATTTATTCGTTATGAATATGAGAGTTGGACGCATGGTATGATGCGATGAGGTATAAACGCATAGTATTGCACGTTTGTCATTGACGCCTAGTGGCATATGTAAGCACTGGTTTATAATAGTGCGGTTATGCGTTAAAGGTGAAATCACAAATGGTGGTGTGAGCTGAAGCAGTCGCCACGTTGGCGGGGGAAAGGAACGTACTTGGCTTACCATGCGTTGGCAAGGTCCACTCATATGTTTTCACATTGGTGAATGGCATCTTCCTGACAGGGTAATCCGACAGTTTGGTTTCAAACAAGATGTCCCATCATAGTGCAATACTGAATCCCTACTACATGACATTGACCTGAGAACCGCAAATTGGTCTGAAAAAGTTGCACATTTGGTAGTACGATAGCACTATCGTAGAAGGTTTATTGCAGTCGGCGTTTCAGTTGGATAATTCGATAGGGATGCAACTCAAGATTACATCCTTTGGTATAATAATATTACGAGATGCTACATTACTTGTCCGGGAGCGGCTTTGGATCATTTGGTATATAATCAAATATTGTCTAATTTTAAATTTGTTTGAAATATTATCTAATTGTTTTGTAATTCACAGAGATCGGGCAATAGTAGTCTTCGCGCAAATGATCCAGATCAGGTATTTACTATATGCAGTAATAACGCAAGTTACATGGAGGAATTACACTACATGTACGATATACCTATTGCGCCTCCACCAGTTCCAAGGCATAGGGGACGTGCTCGAGCAGAAGAAGATGAGTTTGATGCGGTTGACCATAATGTGGAAGAATTGCCTCCTATGATGCAGACGCAAACGCAAAGCCAGACTGGTTATGCCAGTCCGATGGTGATGCAACCAGCCTTTGGTTCATGA

mRNA sequence

ATGGAGAAGGATTTATTCGTTATGAATATGAGAGTTGGACGCATGAGATCGGGCAATAGTAGTCTTCGCGCAAATGATCCAGATCAGGTATTTACTATATGCAGTAATAACGCAAGTTACATGGAGGAATTACACTACATGTACGATATACCTATTGCGCCTCCACCAGTTCCAAGGCATAGGGGACGTGCTCGAGCAGAAGAAGATGAGTTTGATGCGGTTGACCATAATGTGGAAGAATTGCCTCCTATGATGCAGACGCAAACGCAAAGCCAGACTGGTTATGCCAGTCCGATGGTGATGCAACCAGCCTTTGGTTCATGA

Coding sequence (CDS)

ATGGAGAAGGATTTATTCGTTATGAATATGAGAGTTGGACGCATGAGATCGGGCAATAGTAGTCTTCGCGCAAATGATCCAGATCAGGTATTTACTATATGCAGTAATAACGCAAGTTACATGGAGGAATTACACTACATGTACGATATACCTATTGCGCCTCCACCAGTTCCAAGGCATAGGGGACGTGCTCGAGCAGAAGAAGATGAGTTTGATGCGGTTGACCATAATGTGGAAGAATTGCCTCCTATGATGCAGACGCAAACGCAAAGCCAGACTGGTTATGCCAGTCCGATGGTGATGCAACCAGCCTTTGGTTCATGA

Protein sequence

MEKDLFVMNMRVGRMRSGNSSLRANDPDQVFTICSNNASYMEELHYMYDIPIAPPPVPRHRGRARAEEDEFDAVDHNVEELPPMMQTQTQSQTGYASPMVMQPAFGS
Homology
[Close]
BLAST of Cla009111 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 5.8e-20
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 1 

Query: 12  VGRMRSGNSSLR--ANDPDQVFTICSNNASYMEELHYMYDIPIAPPPVPRHRGRARAEED 71
           +  +RS N+ LR  A+DP QV  IC++N  YME +HYMYD+PI P PV R R   + E D
Sbjct: 46  MSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQ-ESD 105

Query: 72  EFDAVDHNVEELPPMMQTQTQSQTGYASPMVMQPAFG 107
           + + VD + EE+PPM QTQTQS+  Y SP++M P FG
Sbjct: 106 QLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFG 141

The following BLAST results are available for this feature:
BLAST of Cla009111 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|5.8e-2051.55PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009111Cla009111.1mRNA