Cla009057 (gene) Watermelon (97103) v1

Overview
NameCla009057
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 21184255 .. 21184485 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGTGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCATCGGGTGCCAGCCGGGGGACGGACTGGGAACGGCTCCTTCGGGGGCCTTCCTCGGGCGTCGAACAGTCAACTCAGAACTAG

mRNA sequence

ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGTGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCATCGGGTGCCAGCCGGGGGACGGACTGGGAACGGCTCCTTCGGGGGCCTTCCTCGGGCGTCGAACAGTCAACTCAGAACTAG

Coding sequence (CDS)

ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACCTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCACGGGGGTCCCAGTCCCGAACCCGTCGGCTGTCGGTGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCATCGGGTGCCAGCCGGGGGACGGACTGGGAACGGCTCCTTCGGGGGCCTTCCTCGGGCGTCGAACAGTCAACTCAGAACTAG

Protein sequence

MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSGASRGTDWERLLRGPSSGVEQSTQN
Homology
[Close]
BLAST of Cla009057 vs. TrEMBL
Match: M1BN50_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402019042 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-32
Identity = 69/76 (90.79%), Postives = 69/76 (90.79%), Query Frame = 1 

Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSGASRGTDWE 60
          MEQCRQGKSAKWIRN GKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGS  A RGTDWE
Sbjct: 1  MEQCRQGKSAKWIRNFGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSPRAGRGTDWE 60

Query: 61 RLLRGPSSGVEQSTQN 77
          R LRGPS GVEQ TQN
Sbjct: 61 RFLRGPSPGVEQPTQN 76

[Close]
BLAST of Cla009057 vs. TrEMBL
Match: A0A0S3TEK1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.UMG125100 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.2e-32
Identity = 70/76 (92.11%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSGASRGTDWE 60
          MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSS A RGTDWE
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSRAGRGTDWE 60

Query: 61 RLLRGPSSGVEQSTQN 77
          R LR  S GVEQSTQN
Sbjct: 61 RALRASSPGVEQSTQN 76

[Close]
BLAST of Cla009057 vs. TrEMBL
Match: A0A0D2Q518_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G276600 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.3e-30
Identity = 67/76 (88.16%), Postives = 67/76 (88.16%), Query Frame = 1 

Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSGASRGTDWE 60
          MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRL   CSSCSRGESGS  A RGTDWE
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLPAHCSSCSRGESGSPRAGRGTDWE 60

Query: 61 RLLRGPSSGVEQSTQN 77
          RL RGPS G EQSTQN
Sbjct: 61 RLPRGPSPGDEQSTQN 76

[Close]
BLAST of Cla009057 vs. TrEMBL
Match: A0A0S3TEM7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.UMG131100 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.8e-28
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSGASRGTDWE 60
          MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSS A RGTDWE
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSRAGRGTDWE 60

Query: 61 RLLRG 66
          R LRG
Sbjct: 61 RALRG 65

[Close]
BLAST of Cla009057 vs. TrEMBL
Match: K7LYM9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G021800 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.4e-27
Identity = 61/65 (93.85%), Postives = 61/65 (93.85%), Query Frame = 1 

Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSGASRGTDWE 60
          MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSC RGESGSS A RGTDWE
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCFRGESGSSRAGRGTDWE 60

Query: 61 RLLRG 66
          R LRG
Sbjct: 61 RALRG 65

[Close]
BLAST of Cla009057 vs. NCBI nr
Match: gi|848920510|ref|XP_012857134.1| (PREDICTED: uncharacterized protein LOC105976409 [Erythranthe guttata])

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-32
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = 1 

Query: 1   MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSGASRGTDWE 60
           MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLS +CSSCSRGESGSS A RGTDWE
Sbjct: 93  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSANCSSCSRGESGSSRAGRGTDWE 152

Query: 61  RLLRGPSSGVEQSTQN 77
            LLRGPS GVEQSTQN
Sbjct: 153 WLLRGPSPGVEQSTQN 168

[Close]
BLAST of Cla009057 vs. NCBI nr
Match: gi|965674227|dbj|BAU03535.1| (hypothetical protein VIGAN_UM125100 [Vigna angularis var. angularis])

HSP 1 Score: 145.2 bits (365), Expect = 4.7e-32
Identity = 70/76 (92.11%), Postives = 70/76 (92.11%), Query Frame = 1 

Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSGASRGTDWE 60
          MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSS A RGTDWE
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSRAGRGTDWE 60

Query: 61 RLLRGPSSGVEQSTQN 77
          R LR  S GVEQSTQN
Sbjct: 61 RALRASSPGVEQSTQN 76

[Close]
BLAST of Cla009057 vs. NCBI nr
Match: gi|763744275|gb|KJB11774.1| (hypothetical protein B456_001G276600 [Gossypium raimondii])

HSP 1 Score: 139.0 bits (349), Expect = 3.3e-30
Identity = 67/76 (88.16%), Postives = 67/76 (88.16%), Query Frame = 1 

Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSGASRGTDWE 60
          MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRL   CSSCSRGESGS  A RGTDWE
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLPAHCSSCSRGESGSPRAGRGTDWE 60

Query: 61 RLLRGPSSGVEQSTQN 77
          RL RGPS G EQSTQN
Sbjct: 61 RLPRGPSPGDEQSTQN 76

[Close]
BLAST of Cla009057 vs. NCBI nr
Match: gi|965673866|dbj|BAU03482.1| (hypothetical protein VIGAN_UM114500 [Vigna angularis var. angularis])

HSP 1 Score: 131.3 bits (329), Expect = 7.0e-28
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSGASRGTDWE 60
          MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSS A RGTDWE
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSRAGRGTDWE 60

Query: 61 RLLRG 66
          R LRG
Sbjct: 61 RALRG 65

[Close]
BLAST of Cla009057 vs. NCBI nr
Match: gi|947068923|gb|KRH17814.1| (hypothetical protein GLYMA_13G0181001, partial [Glycine max])

HSP 1 Score: 129.0 bits (323), Expect = 3.4e-27
Identity = 61/65 (93.85%), Postives = 61/65 (93.85%), Query Frame = 1 

Query: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCSRGESGSSGASRGTDWE 60
          MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSC RGESGSS A RGTDWE
Sbjct: 1  MEQCRQGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSVDCSSCFRGESGSSRAGRGTDWE 60

Query: 61 RLLRG 66
          R LRG
Sbjct: 61 RALRG 65

The following BLAST results are available for this feature:
BLAST of Cla009057 vs. TrEMBL
Match NameE-valueIdentityDescription
M1BN50_SOLTU2.5e-3290.79Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402019042 PE=4 SV=1[more]
A0A0S3TEK1_PHAAN3.2e-3292.11Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.UMG125100 PE=... [more]
A0A0D2Q518_GOSRA2.3e-3088.16Uncharacterized protein OS=Gossypium raimondii GN=B456_001G276600 PE=4 SV=1[more]
A0A0S3TEM7_PHAAN4.8e-2895.38Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.UMG131100 PE=... [more]
K7LYM9_SOYBN2.4e-2793.85Uncharacterized protein OS=Glycine max GN=GLYMA_13G021800 PE=4 SV=1[more]
BLAST of Cla009057 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|848920510|ref|XP_012857134.1|2.7e-3292.11PREDICTED: uncharacterized protein LOC105976409 [Erythranthe guttata][more]
gi|965674227|dbj|BAU03535.1|4.7e-3292.11hypothetical protein VIGAN_UM125100 [Vigna angularis var. angularis][more]
gi|763744275|gb|KJB11774.1|3.3e-3088.16hypothetical protein B456_001G276600 [Gossypium raimondii][more]
gi|965673866|dbj|BAU03482.1|7.0e-2895.38hypothetical protein VIGAN_UM114500 [Vigna angularis var. angularis][more]
gi|947068923|gb|KRH17814.1|3.4e-2793.85hypothetical protein GLYMA_13G0181001, partial [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU10806watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009057Cla009057.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU10806WMU10806transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 71..76
scor
NoneNo IPR availablePANTHERPTHR33187FAMILY NOT NAMEDcoord: 1..76
score: 4.2
NoneNo IPR availablePANTHERPTHR33187:SF1SUBFAMILY NOT NAMEDcoord: 1..76
score: 4.2