Cla008903 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008903
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 1647787 .. 1648146 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAATTCTTGGACAATGACAGAAGAGCTAGATGATGGCAACATATTGAAGCTAAATTTGGATGATGATGAAATGAGAGCTGAAGAAAATTTTCTTGTCGAGTACTTTCATACGTCAAATGTAGCAAATATCACCATGTTTGATGTTGTTTCAAACGAGAGTTTTGAAGTAACCATGACACAGGTGACCTCTAAGCGATTTCATATCCAATGGGGTATGGACTTCGTAAGCAAAAAAAACTATATGGGGGGAGATGGAATACGTTGGGATTGTAGGAAAGAGAAATTATGTTTTAGGGTTCTTCCTGTTTCAGCTAGGCGAACTTATCCACAAATTGCTCATCAACGTTACATGTAG

mRNA sequence

ATGGTAAATTCTTGGACAATGACAGAAGAGCTAGATGATGGCAACATATTGAAGCTAAATTTGGATGATGATGAAATGAGAGCTGAAGAAAATTTTCTTGTCGAGTACTTTCATACGTCAAATGTAGCAAATATCACCATGTTTGATGTTGTTTCAAACGAGAGTTTTGAAGTAACCATGACACAGGTGACCTCTAAGCGATTTCATATCCAATGGGGTATGGACTTCGTAAGCAAAAAAAACTATATGGGGGGAGATGGAATACGTTGGGATTGTAGGAAAGAGAAATTATGTTTTAGGGTTCTTCCTGTTTCAGCTAGGCGAACTTATCCACAAATTGCTCATCAACGTTACATGTAG

Coding sequence (CDS)

ATGGTAAATTCTTGGACAATGACAGAAGAGCTAGATGATGGCAACATATTGAAGCTAAATTTGGATGATGATGAAATGAGAGCTGAAGAAAATTTTCTTGTCGAGTACTTTCATACGTCAAATGTAGCAAATATCACCATGTTTGATGTTGTTTCAAACGAGAGTTTTGAAGTAACCATGACACAGGTGACCTCTAAGCGATTTCATATCCAATGGGGTATGGACTTCGTAAGCAAAAAAAACTATATGGGGGGAGATGGAATACGTTGGGATTGTAGGAAAGAGAAATTATGTTTTAGGGTTCTTCCTGTTTCAGCTAGGCGAACTTATCCACAAATTGCTCATCAACGTTACATGTAG

Protein sequence

MVNSWTMTEELDDGNILKLNLDDDEMRAEENFLVEYFHTSNVANITMFDVVSNESFEVTMTQVTSKRFHIQWGMDFVSKKNYMGGDGIRWDCRKEKLCFRVLPVSARRTYPQIAHQRYM

Homology

[Close]

BLAST of Cla008903 vs. TrEMBL
Match: A0A0A0LJ50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270130 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-16
Identity = 54/116 (46.55%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 5   WTMTEELDDGNILKLNLDDDEMRAEENFLVEYF-HTSNVANITMFDVVSNESFEVTMTQV 64
           W++TE LD    L L LD  EM  E +FL+ YF   S  A ITMFDVVS +SF+ TM + 
Sbjct: 8   WSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSFKATMERK 67

Query: 65  T-SKRFHIQWGMDFVSKKNYMGGDGIR--WDCRKEKLCFRVLPVSARRTYPQIAHQ 117
           + S +F I W  DFV   NY  GD I   W+ + + LCF ++  SA RTYPQ++ Q
Sbjct: 68  SASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQMSGQ 123

[Close]

BLAST of Cla008903 vs. TrEMBL
Match: A0A0A0LD04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G401960 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.9e-16
Identity = 54/116 (46.55%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 5   WTMTEELDDGNILKLNLDDDEMRAEENFLVEYF-HTSNVANITMFDVVSNESFEVTMTQV 64
           W++TE LD    L L LD  EM  E +FL+ YF   S  A ITMFDVVS +SF+ TM + 
Sbjct: 8   WSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSFKATMERK 67

Query: 65  T-SKRFHIQWGMDFVSKKNYMGGDGIR--WDCRKEKLCFRVLPVSARRTYPQIAHQ 117
           + S +F I W  DFV   NY  GD I   W+ + + LCF ++  SA RTYPQ++ Q
Sbjct: 68  SASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQMSGQ 123

[Close]

BLAST of Cla008903 vs. NCBI nr
Match: gi|700206801|gb|KGN61920.1| (hypothetical protein Csa_2G270130 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 4.3e-16
Identity = 54/116 (46.55%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 5   WTMTEELDDGNILKLNLDDDEMRAEENFLVEYF-HTSNVANITMFDVVSNESFEVTMTQV 64
           W++TE LD    L L LD  EM  E +FL+ YF   S  A ITMFDVVS +SF+ TM + 
Sbjct: 8   WSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSFKATMERK 67

Query: 65  T-SKRFHIQWGMDFVSKKNYMGGDGIR--WDCRKEKLCFRVLPVSARRTYPQIAHQ 117
           + S +F I W  DFV   NY  GD I   W+ + + LCF ++  SA RTYPQ++ Q
Sbjct: 68  SASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQMSGQ 123

[Close]

BLAST of Cla008903 vs. NCBI nr
Match: gi|700202808|gb|KGN57941.1| (hypothetical protein Csa_3G401960 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 5.6e-16
Identity = 54/116 (46.55%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 5   WTMTEELDDGNILKLNLDDDEMRAEENFLVEYF-HTSNVANITMFDVVSNESFEVTMTQV 64
           W++TE LD    L L LD  EM  E +FL+ YF   S  A ITMFDVVS +SF+ TM + 
Sbjct: 8   WSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSFKATMERK 67

Query: 65  T-SKRFHIQWGMDFVSKKNYMGGDGIR--WDCRKEKLCFRVLPVSARRTYPQIAHQ 117
           + S +F I W  DFV   NY  GD I   W+ + + LCF ++  SA RTYPQ++ Q
Sbjct: 68  SASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQMSGQ 123

The following BLAST results are available for this feature:

BLAST of Cla008903 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ50_CUCSA	3.0e-16	46.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G270130 PE=4 SV=1	[more]
A0A0A0LD04_CUCSA	3.9e-16	46.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G401960 PE=4 SV=1	[more]

BLAST of Cla008903 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206801\|gb\|KGN61920.1\|	4.3e-16	46.55	hypothetical protein Csa_2G270130 [Cucumis sativus]	[more]
gi\|700202808\|gb\|KGN57941.1\|	5.6e-16	46.55	hypothetical protein Csa_3G401960 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008903	Cla008903.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla008903	ClCG10G000660	Watermelon (Charleston Gray)	wcgwmB056
Cla008903	CsaV3_2G015930	Cucumber (Chinese Long) v3	cucwmB120

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla008903	Wax gourd	wgowmB413
Cla008903	Wax gourd	wgowmB575
Cla008903	Watermelon (97103) v1	wmwmB048
Cla008903	Cucumber (Gy14) v1	cgywmB018
Cla008903	Cucumber (Gy14) v1	cgywmB583
Cla008903	Cucurbita maxima (Rimu)	cmawmB292
Cla008903	Cucurbita maxima (Rimu)	cmawmB616
Cla008903	Cucurbita maxima (Rimu)	cmawmB813
Cla008903	Cucurbita moschata (Rifu)	cmowmB285
Cla008903	Cucurbita moschata (Rifu)	cmowmB608
Cla008903	Cucurbita moschata (Rifu)	cmowmB805
Cla008903	Wild cucumber (PI 183967)	cpiwmB200
Cla008903	Wild cucumber (PI 183967)	cpiwmB465
Cla008903	Melon (DHL92) v3.5.1	mewmB446
Cla008903	Melon (DHL92) v3.5.1	mewmB555
Cla008903	Watermelon (Charleston Gray)	wcgwmB118
Cla008903	Cucumber (Chinese Long) v2	cuwmB200
Cla008903	Cucumber (Chinese Long) v2	cuwmB450
Cla008903	Cucurbita pepo (Zucchini)	cpewmB063
Cla008903	Cucurbita pepo (Zucchini)	cpewmB202
Cla008903	Cucurbita pepo (Zucchini)	cpewmB472
Cla008903	Cucurbita pepo (Zucchini)	cpewmB540
Cla008903	Bottle gourd (USVL1VR-Ls)	lsiwmB129
Cla008903	Bottle gourd (USVL1VR-Ls)	lsiwmB429
Cla008903	Cucumber (Gy14) v2	cgybwmB188
Cla008903	Cucumber (Gy14) v2	cgybwmB422
Cla008903	Melon (DHL92) v3.6.1	medwmB438
Cla008903	Melon (DHL92) v3.6.1	medwmB541
Cla008903	Silver-seed gourd	carwmB0398
Cla008903	Silver-seed gourd	carwmB0425
Cla008903	Cucumber (Chinese Long) v3	cucwmB209
Cla008903	Cucumber (Chinese Long) v3	cucwmB475
Cla008903	Watermelon (97103) v2	wmwmbB049
Cla008903	Watermelon (97103) v2	wmwmbB056