Cla008870 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008870
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 1365067 .. 1365396 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCATTCGTCAACAACATGTTGAACAAACTCACTCCGTTTCCCTCTCTCCGCCTCTGCCTTGTTCGCCCCCGACGTTCCCGCCCACGCTCCCGCCGACGTTCCGACGACCGGAATATCAGGACACGGAGTTTCTTCGAGGCTCAGAGGAGAATCGCTCAAAATCCTTCTGTCACACAGCTTCAACCTGCTGCTTCCACTTCAAGCTATGGAAGCCGAGAAGACGATGTCGATCAGCGAGCTCAGATTTACATCCATAAAGTTCGCAGTCAATTGAGGTTACAACCACAAATTTCTAAGCAATCGAGCTACCGCGACGGAGAATGA

mRNA sequence

ATGGCCTCATTCGTCAACAACATGTTGAACAAACTCACTCCGTTTCCCTCTCTCCGCCTCTGCCTTGTTCGCCCCCGACGTTCCCGCCCACGCTCCCGCCGACGTTCCGACGACCGGAATATCAGGACACGGAGTTTCTTCGAGGCTCAGAGGAGAATCGCTCAAAATCCTTCTGTCACACAGCTTCAACCTGCTGCTTCCACTTCAAGCTATGGAAGCCGAGAAGACGATGTCGATCAGCGAGCTCAGATTTACATCCATAAAGTTCGCAGTCAATTGAGGTTACAACCACAAATTTCTAAGCAATCGAGCTACCGCGACGGAGAATGA

Coding sequence (CDS)

ATGGCCTCATTCGTCAACAACATGTTGAACAAACTCACTCCGTTTCCCTCTCTCCGCCTCTGCCTTGTTCGCCCCCGACGTTCCCGCCCACGCTCCCGCCGACGTTCCGACGACCGGAATATCAGGACACGGAGTTTCTTCGAGGCTCAGAGGAGAATCGCTCAAAATCCTTCTGTCACACAGCTTCAACCTGCTGCTTCCACTTCAAGCTATGGAAGCCGAGAAGACGATGTCGATCAGCGAGCTCAGATTTACATCCATAAAGTTCGCAGTCAATTGAGGTTACAACCACAAATTTCTAAGCAATCGAGCTACCGCGACGGAGAATGA

Protein sequence

MASFVNNMLNKLTPFPSLRLCLVRPRRSRPRSRRRSDDRNIRTRSFFEAQRRIAQNPSVTQLQPAASTSSYGSREDDVDQRAQIYIHKVRSQLRLQPQISKQSSYRDGE

Homology

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BLAST of Cla008870 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 1


Query: 1   MASFVNNMLNKLTPFPSLRLCLVRPRRSRPRSRRRSDD-RNIRTRSFFEAQRRIAQNPSV 60
           MAS +   L KL     LRLCL+  +RSR      SDD + +  R   E Q RIA++  V
Sbjct: 8   MASRLQKALMKLKAV--LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFV 67

Query: 61  TQLQPAASTSSYGSREDDVDQRAQIYIHKVRSQLRLQPQISKQSSY 106
            +L+  AS+S YG  E+DVDQRA+I+I   R QLRL+ QIS Q  Y
Sbjct: 68  RKLE-RASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRY 110

[Close]

BLAST of Cla008870 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 1


Query: 1   MASFVNNMLNKLTPFPSLRLCLVRPRRSRPRSRRRSDD-RNIRTRSFFEAQRRIAQNPSV 60
           MAS +   L KL     LRLCL+  +RSR      SDD + +  R   E Q RIA++  V
Sbjct: 1   MASRLQKALMKLKAV--LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFV 60

Query: 61  TQLQPAASTSSYGSREDDVDQRAQIYIHKVRSQLRLQPQISKQSSY 106
            +L+  AS+S YG  E+DVDQRA+I+I   R QLRL+ QIS Q  Y
Sbjct: 61  RKLE-RASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRY 103

[Close]

BLAST of Cla008870 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-09
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 1


Query: 1   MASFVNNMLNKLTPFPSLRLCLVRPRRSRPRSRRRSDD-RNIRTRSFFEAQRRIAQNPSV 60
           MAS +   L KL     LRLCL+  +RSR      SDD + +  R   E Q RIA++  V
Sbjct: 8   MASRLQKALMKLKAV--LRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFV 67

Query: 61  TQLQPAASTSSYGSREDDVDQRAQIYIHKVRSQLRLQPQISKQSSY 106
            +L+  AS+S YG  E+DVDQRA+I+I   R QLRL+ QIS Q  Y
Sbjct: 68  RKLE-RASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRY 110

The following BLAST results are available for this feature:

BLAST of Cla008870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	1.5e-09	46.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]

BLAST of Cla008870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688278\|ref\|XP_011652707.1\|	2.1e-09	46.23	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
gi\|700200554\|gb\|KGN55687.1\|	2.1e-09	46.23	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008870	Cla008870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 75..101 score: 1.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla008870	Wax gourd	wgowmB575
Cla008870	Cucumber (Gy14) v1	cgywmB583
Cla008870	Cucurbita maxima (Rimu)	cmawmB292
Cla008870	Cucurbita maxima (Rimu)	cmawmB789
Cla008870	Cucurbita moschata (Rifu)	cmowmB285
Cla008870	Cucurbita moschata (Rifu)	cmowmB783
Cla008870	Wild cucumber (PI 183967)	cpiwmB200
Cla008870	Melon (DHL92) v3.5.1	mewmB446
Cla008870	Watermelon (Charleston Gray)	wcgwmB056
Cla008870	Cucumber (Chinese Long) v2	cuwmB200
Cla008870	Cucurbita pepo (Zucchini)	cpewmB202
Cla008870	Cucurbita pepo (Zucchini)	cpewmB829
Cla008870	Bottle gourd (USVL1VR-Ls)	lsiwmB429
Cla008870	Cucumber (Gy14) v2	cgybwmB188
Cla008870	Melon (DHL92) v3.6.1	medwmB438
Cla008870	Silver-seed gourd	carwmB0425
Cla008870	Silver-seed gourd	carwmB0678
Cla008870	Cucumber (Chinese Long) v3	cucwmB209
Cla008870	Watermelon (97103) v2	wmwmbB056