Cla008424 (gene) Watermelon (97103) v1

Overview
NameCla008424
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCysteine proteinase inhibitor 5 (AHRD V1 ***- CYT5_ARATH); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
LocationChr1 : 9440895 .. 9441257 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTTGAGATAGTCGCCCCGGGACAAAACGATGCCTTGCTCCAAAACCGGTGCGAGCCAGGCGGTTGGGAACCGATCGAGAACATCCACGACTCGTACGTGCAAGAGATAGGAAGGTTTGCAGTGATGGAACACACACACAAGCTAGTAGGAGCATCACTGAGGTTCATTCGTGTGGTGAGTGGTGAGACTAGGCCGATGAGCGAAGGCAAAGAATACAGGCTTGTGGTGGAAGTGGCAGAACAGATAATAACTAGTCCTCCAATGTTATCAGTTTCTATCAAGTTTTACTTGGCAACTGTTCTGGAGAAGCCATTAGATCGATCTTGGACACTCAAAGCTTTTGTGCCTTGTAATTAG

mRNA sequence

ATGGAATTTGAGATAGTCGCCCCGGGACAAAACGATGCCTTGCTCCAAAACCGGTGCGAGCCAGGCGGTTGGGAACCGATCGAGAACATCCACGACTCGTACGTGCAAGAGATAGGAAGGTTTGCAGTGATGGAACACACACACAAGCTAGTAGGAGCATCACTGAGGTTCATTCGTGTGGTGAGTGGTGAGACTAGGCCGATGAGCGAAGGCAAAGAATACAGGCTTGTGGTGGAAGTGGCAGAACAGATAATAACTAGTCCTCCAATGTTATCAGTTTCTATCAAGTTTTACTTGGCAACTGTTCTGGAGAAGCCATTAGATCGATCTTGGACACTCAAAGCTTTTGTGCCTTGTAATTAG

Coding sequence (CDS)

ATGGAATTTGAGATAGTCGCCCCGGGACAAAACGATGCCTTGCTCCAAAACCGGTGCGAGCCAGGCGGTTGGGAACCGATCGAGAACATCCACGACTCGTACGTGCAAGAGATAGGAAGGTTTGCAGTGATGGAACACACACACAAGCTAGTAGGAGCATCACTGAGGTTCATTCGTGTGGTGAGTGGTGAGACTAGGCCGATGAGCGAAGGCAAAGAATACAGGCTTGTGGTGGAAGTGGCAGAACAGATAATAACTAGTCCTCCAATGTTATCAGTTTCTATCAAGTTTTACTTGGCAACTGTTCTGGAGAAGCCATTAGATCGATCTTGGACACTCAAAGCTTTTGTGCCTTGTAATTAG

Protein sequence

MEFEIVAPGQNDALLQNRCEPGGWEPIENIHDSYVQEIGRFAVMEHTHKLVGASLRFIRVVSGETRPMSEGKEYRLVVEVAEQIITSPPMLSVSIKFYLATVLEKPLDRSWTLKAFVPCN
Homology
[Close]
BLAST of Cla008424 vs. Swiss-Prot
Match: CYT5_ARATH (Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana GN=CYS5 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-08
Identity = 42/99 (42.42%), Postives = 51/99 (51.52%), Query Frame = 1 

Query: 22  GGWEPIENIHDSYVQEIGRFAVMEHTHKLVGASLRFIRVVSGETRPMSEGKEYRLVVEVA 81
           GGW PI N+ D  V EIG FAV E+ +K   + L+F  VVSGET+ +S G  YRL V   
Sbjct: 29  GGWSPISNVTDPQVVEIGEFAVSEY-NKRSESGLKFETVVSGETQVVS-GTNYRLKVAAN 88

Query: 82  EQIITSPPMLSVSIKFYLATVLEKPLDRSWTLKAFVPCN 121
           +    S        K YLA V +KP  +   L +F P N
Sbjct: 89  DGDGVS--------KNYLAIVWDKPWMKFRNLTSFEPAN 117

[Close]
BLAST of Cla008424 vs. Swiss-Prot
Match: CYT6_ORYSJ (Cysteine proteinase inhibitor 6 OS=Oryza sativa subsp. japonica GN=Os03g0210200 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-06
Identity = 27/61 (44.26%), Postives = 35/61 (57.38%), Query Frame = 1 

Query: 21 PGGWEPIENIHDSYVQEIGRFAVMEHTHKLVGASLRFIRVVSGETRPMSEGKEYRLVVEV 80
          P GW PI+NI D ++QE+GR+A+ E+        L F RV  GE + +S G  YRL +E 
Sbjct: 20 PRGWSPIKNIDDPHIQELGRWAITENNRVSPSDELTFHRVTGGEQQVVS-GMNYRLEIEA 79

Query: 81 A 82
          A
Sbjct: 80 A 79

[Close]
BLAST of Cla008424 vs. TrEMBL
Match: V4NY46_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017424mg PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 1 

Query: 23  GWEPIENIHDSYVQEIGRFAVMEHTHKLVGASLRFIRVVSGETRPMSEGKEYRLVVEVAE 82
           GW PI ++ D ++ EIG FAV E+  +   + L+F++VVSGE++ +S G  YRLVV   +
Sbjct: 27  GWSPISDVKDPHIVEIGEFAVSEYDRQ-SKSGLKFVKVVSGESQIVS-GVNYRLVVAAND 86

Query: 83  QIITSPPMLSVSIKFYLATVLEKPLDRSWTLKAFVPCN 121
            +I      S   K Y+A VLEKP  +S  L  F P N
Sbjct: 87  DVIAGGDGAS---KTYVAIVLEKPWLKSMNLTFFKPTN 119

[Close]
BLAST of Cla008424 vs. TrEMBL
Match: A5B2E1_VITVI (Cysteine proteinase inhibitor OS=Vitis vinifera GN=VITISV_013491 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 47/85 (55.29%), Postives = 52/85 (61.18%), Query Frame = 1 

Query: 22  GGWEPIENIHDSYVQEIGRFAVMEHTHKLVGASLRFIRVVSGETRPMSEGKEYRLVVEVA 81
           GGW PI+NI D  VQEIG FAV EH +K    SL+F  VVSGET+ +S G  YRLVV VA
Sbjct: 32  GGWRPIKNISDPXVQEIGEFAVTEH-NKQAXESLKFQSVVSGETQVVS-GTNYRLVV-VA 91

Query: 82  EQIITSPPMLSVSIKFYLATVLEKP 107
           E          VS K Y A V EKP
Sbjct: 92  ED-------GGVSNK-YEAVVWEKP 105

[Close]
BLAST of Cla008424 vs. TrEMBL
Match: F6HRK8_VITVI (Cysteine proteinase inhibitor OS=Vitis vinifera GN=VIT_00s0187g00040 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-07
Identity = 47/85 (55.29%), Postives = 52/85 (61.18%), Query Frame = 1 

Query: 22  GGWEPIENIHDSYVQEIGRFAVMEHTHKLVGASLRFIRVVSGETRPMSEGKEYRLVVEVA 81
           GGW PI+NI D  VQEIG FAV EH +K    SL+F  VVSGET+ +S G  YRLVV VA
Sbjct: 32  GGWRPIKNISDPRVQEIGEFAVTEH-NKQATESLKFQSVVSGETQVVS-GTNYRLVV-VA 91

Query: 82  EQIITSPPMLSVSIKFYLATVLEKP 107
           E          VS K Y A V EKP
Sbjct: 92  ED-------GGVSNK-YEAVVWEKP 105

[Close]
BLAST of Cla008424 vs. TrEMBL
Match: I1LHN1_SOYBN (Cysteine proteinase inhibitor OS=Glycine max GN=GLYMA_11G064200 PE=3 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-07
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 1 

Query: 22  GGWEPIENIHDSYVQEIGRFAVMEHTHKLVGASLRFIRVVSGETRPMSEGKEYRLVVEVA 81
           GGW PI++++DS+V EI  +AV E+  K  GA L  ++V  GET+ ++ G  YRLV++V 
Sbjct: 26  GGWSPIKDVNDSHVAEIANYAVSEY-DKRYGAKLTLVKVSKGETQVVA-GTNYRLVLKVK 85

Query: 82  EQIITSPPMLSVSIKFYLATVLEKPLDRSWTLKAFVP 119
               T+          Y ATVLEKP      L +F P
Sbjct: 86  NGSTTAS---------YQATVLEKPWLHFRNLTSFKP 111

[Close]
BLAST of Cla008424 vs. TrEMBL
Match: Q2A9T6_BRAOL (Cysteine proteinase inhibitor OS=Brassica oleracea GN=25.t00011 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-07
Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 1 

Query: 22  GGWEPIENIHDSYVQEIGRFAVMEHTHKLVGASLRFIRVVSGETRPMSEGKEYRLVVEVA 81
           GGW P+ +++D +V EIG+F+V E+ +K   A L+F+ VVSGE++ ++ G  YRL+V V 
Sbjct: 27  GGWRPLSDVNDPHVVEIGKFSVSEY-NKQSKAGLKFVAVVSGESQVVA-GMNYRLIVAVN 86

Query: 82  EQIITSPPMLSVSIKFYLATVLEKPLDRSWTLKAFVP 119
           + + T+    S   K Y A V E+   +S  L +F P
Sbjct: 87  DGVETAGAGAS---KNYEAIVWERAWLKSMNLTSFKP 118

[Close]
BLAST of Cla008424 vs. NCBI nr
Match: gi|567211652|ref|XP_006410408.1| (hypothetical protein EUTSA_v10017424mg [Eutrema salsugineum])

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 1 

Query: 23  GWEPIENIHDSYVQEIGRFAVMEHTHKLVGASLRFIRVVSGETRPMSEGKEYRLVVEVAE 82
           GW PI ++ D ++ EIG FAV E+  +   + L+F++VVSGE++ +S G  YRLVV   +
Sbjct: 27  GWSPISDVKDPHIVEIGEFAVSEYDRQ-SKSGLKFVKVVSGESQIVS-GVNYRLVVAAND 86

Query: 83  QIITSPPMLSVSIKFYLATVLEKPLDRSWTLKAFVPCN 121
            +I      S   K Y+A VLEKP  +S  L  F P N
Sbjct: 87  DVIAGGDGAS---KTYVAIVLEKPWLKSMNLTFFKPTN 119

[Close]
BLAST of Cla008424 vs. NCBI nr
Match: gi|743888071|ref|XP_010910533.1| (PREDICTED: cysteine proteinase inhibitor 1-like [Elaeis guineensis])

HSP 1 Score: 65.1 bits (157), Expect = 9.7e-08
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1 

Query: 22 GGWEPIENIHDSYVQEIGRFAVMEHTHKLVGASLRFIRVVSGETRPMSEGKEYRLVVE 80
          GGW+PI+N++D++VQEI +FAV EH +KL  + L F +VV GET+ +S G  YRLVVE
Sbjct: 31 GGWQPIKNVNDAHVQEIAKFAVSEH-NKLANSRLAFSKVVKGETQVVS-GINYRLVVE 86

[Close]
BLAST of Cla008424 vs. NCBI nr
Match: gi|147854421|emb|CAN82794.1| (hypothetical protein VITISV_013491 [Vitis vinifera])

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-07
Identity = 47/85 (55.29%), Postives = 52/85 (61.18%), Query Frame = 1 

Query: 22  GGWEPIENIHDSYVQEIGRFAVMEHTHKLVGASLRFIRVVSGETRPMSEGKEYRLVVEVA 81
           GGW PI+NI D  VQEIG FAV EH +K    SL+F  VVSGET+ +S G  YRLVV VA
Sbjct: 32  GGWRPIKNISDPXVQEIGEFAVTEH-NKQAXESLKFQSVVSGETQVVS-GTNYRLVV-VA 91

Query: 82  EQIITSPPMLSVSIKFYLATVLEKP 107
           E          VS K Y A V EKP
Sbjct: 92  ED-------GGVSNK-YEAVVWEKP 105

[Close]
BLAST of Cla008424 vs. NCBI nr
Match: gi|297741794|emb|CBI33099.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-07
Identity = 47/85 (55.29%), Postives = 52/85 (61.18%), Query Frame = 1 

Query: 22  GGWEPIENIHDSYVQEIGRFAVMEHTHKLVGASLRFIRVVSGETRPMSEGKEYRLVVEVA 81
           GGW PI+NI D  VQEIG FAV EH +K    SL+F  VVSGET+ +S G  YRLVV VA
Sbjct: 60  GGWRPIKNISDPRVQEIGEFAVTEH-NKQATESLKFQSVVSGETQVVS-GTNYRLVV-VA 119

Query: 82  EQIITSPPMLSVSIKFYLATVLEKP 107
           E          VS K Y A V EKP
Sbjct: 120 ED-------GGVSNK-YEAVVWEKP 133

[Close]
BLAST of Cla008424 vs. NCBI nr
Match: gi|359495539|ref|XP_003635016.1| (PREDICTED: cysteine proteinase inhibitor 1-like [Vitis vinifera])

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-07
Identity = 47/85 (55.29%), Postives = 52/85 (61.18%), Query Frame = 1 

Query: 22  GGWEPIENIHDSYVQEIGRFAVMEHTHKLVGASLRFIRVVSGETRPMSEGKEYRLVVEVA 81
           GGW PI+NI D  VQEIG FAV EH +K    SL+F  VVSGET+ +S G  YRLVV VA
Sbjct: 32  GGWRPIKNISDPRVQEIGEFAVTEH-NKQATESLKFQSVVSGETQVVS-GTNYRLVV-VA 91

Query: 82  EQIITSPPMLSVSIKFYLATVLEKP 107
           E          VS K Y A V EKP
Sbjct: 92  ED-------GGVSNK-YEAVVWEKP 105

The following BLAST results are available for this feature:
BLAST of Cla008424 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYT5_ARATH3.3e-0842.42Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana GN=CYS5 PE=2 SV=2[more]
CYT6_ORYSJ1.1e-0644.26Cysteine proteinase inhibitor 6 OS=Oryza sativa subsp. japonica GN=Os03g0210200 ... [more]
BLAST of Cla008424 vs. TrEMBL
Match NameE-valueIdentityDescription
V4NY46_EUTSA1.4e-0841.84Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017424mg PE=4 SV=1[more]
A5B2E1_VITVI2.0e-0755.29Cysteine proteinase inhibitor OS=Vitis vinifera GN=VITISV_013491 PE=3 SV=1[more]
F6HRK8_VITVI3.3e-0755.29Cysteine proteinase inhibitor OS=Vitis vinifera GN=VIT_00s0187g00040 PE=3 SV=1[more]
I1LHN1_SOYBN7.4e-0740.21Cysteine proteinase inhibitor OS=Glycine max GN=GLYMA_11G064200 PE=3 SV=2[more]
Q2A9T6_BRAOL7.4e-0739.18Cysteine proteinase inhibitor OS=Brassica oleracea GN=25.t00011 PE=3 SV=1[more]
BLAST of Cla008424 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|567211652|ref|XP_006410408.1|1.9e-0841.84hypothetical protein EUTSA_v10017424mg [Eutrema salsugineum][more]
gi|743888071|ref|XP_010910533.1|9.7e-0856.90PREDICTED: cysteine proteinase inhibitor 1-like [Elaeis guineensis][more]
gi|147854421|emb|CAN82794.1|2.8e-0755.29hypothetical protein VITISV_013491 [Vitis vinifera][more]
gi|297741794|emb|CBI33099.3|4.8e-0755.29unnamed protein product [Vitis vinifera][more]
gi|359495539|ref|XP_003635016.1|4.8e-0755.29PREDICTED: cysteine proteinase inhibitor 1-like [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR020381Proteinase inhibitor I25, cystatin, conserved region
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008424Cla008424.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020381Proteinase inhibitor I25, cystatin, conserved regionPRODOMPD001231coord: 35..120
score: 9.
IPR020381Proteinase inhibitor I25, cystatin, conserved regionPFAMPF16845SQAPIcoord: 27..118
score: 3.3
NoneNo IPR availableGENE3DG3DSA:3.10.450.10coord: 21..114
score: 1.1
NoneNo IPR availableunknownSSF54403Cystatin/monellincoord: 22..118
score: 3.64