Cla008396 (gene) Watermelon (97103) v1

Overview
NameCla008396
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 9724420 .. 9724731 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTTGTTATTGTTAGGCGTAGTGAGATTGAACTGCGTGAGAGAGGCGTCGGTGGCGTGGAATTGGAGGAGATTTGGACGGAAGATGAGCCACAAGAGGAAGACAGCAATGCCGAGGACGATGACGATGGTGATGATGATTTGACAGATGAGGTTGAGGATACAGCCGCAGCAGCAGTTGCAGAGGCAGCCGAGACAGCCGCAACAGCCGCAGCCGCCGTCGCCGCGGCCAGGGCGGTGGTAGGACTTGGAGGAGGGAGGAATGGAAGGGCCATAGTAAGCTCCGTTGAGATGGGACGCCATTGTTGA

mRNA sequence

ATGGAGGTTGTTATTGTTAGGCGTAGTGAGATTGAACTGCGTGAGAGAGGCGTCGGTGGCGTGGAATTGGAGGAGATTTGGACGGAAGATGAGCCACAAGAGGAAGACAGCAATGCCGAGGACGATGACGATGGTGATGATGATTTGACAGATGAGGTTGAGGATACAGCCGCAGCAGCAGTTGCAGAGGCAGCCGAGACAGCCGCAACAGCCGCAGCCGCCGTCGCCGCGGCCAGGGCGGTGGTAGGACTTGGAGGAGGGAGGAATGGAAGGGCCATAGTAAGCTCCGTTGAGATGGGACGCCATTGTTGA

Coding sequence (CDS)

ATGGAGGTTGTTATTGTTAGGCGTAGTGAGATTGAACTGCGTGAGAGAGGCGTCGGTGGCGTGGAATTGGAGGAGATTTGGACGGAAGATGAGCCACAAGAGGAAGACAGCAATGCCGAGGACGATGACGATGGTGATGATGATTTGACAGATGAGGTTGAGGATACAGCCGCAGCAGCAGTTGCAGAGGCAGCCGAGACAGCCGCAACAGCCGCAGCCGCCGTCGCCGCGGCCAGGGCGGTGGTAGGACTTGGAGGAGGGAGGAATGGAAGGGCCATAGTAAGCTCCGTTGAGATGGGACGCCATTGTTGA

Protein sequence

MEVVIVRRSEIELRERGVGGVELEEIWTEDEPQEEDSNAEDDDDGDDDLTDEVEDTAAAAVAEAAETAATAAAAVAAARAVVGLGGGRNGRAIVSSVEMGRHC
Homology
[Close]
BLAST of Cla008396 vs. TrEMBL
Match: A0A059A6N3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02613 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.7e-10
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 1   MEVVI--VRRSEIELRERGVGGVELEEIWTEDEPQEEDSNAEDDDDGDDDLTDEVEDTAA 60
           +EVV   V   E+EL E  VG VEL+E+  EDEP++E    + D  G+D++ DE+E+ AA
Sbjct: 18  LEVVAEGVGGGEVELGELRVGDVELDEVGAEDEPEDEGEETDGDHHGEDEVEDELEEAAA 77

Query: 61  AAVAEAAETAATAAAAVAAARAVVGLGGGRNGRAIVSSVEMG 101
            A          A AA AAA AVVG+  G +G A+V +VE+G
Sbjct: 78  TA----------ADAAPAAAGAVVGVLLGGHGGAVVGAVEVG 109

[Close]
BLAST of Cla008396 vs. NCBI nr
Match: gi|629082555|gb|KCW49000.1| (hypothetical protein EUGRSUZ_K02613 [Eucalyptus grandis])

HSP 1 Score: 72.0 bits (175), Expect = 6.8e-10
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 1   MEVVI--VRRSEIELRERGVGGVELEEIWTEDEPQEEDSNAEDDDDGDDDLTDEVEDTAA 60
           +EVV   V   E+EL E  VG VEL+E+  EDEP++E    + D  G+D++ DE+E+ AA
Sbjct: 18  LEVVAEGVGGGEVELGELRVGDVELDEVGAEDEPEDEGEETDGDHHGEDEVEDELEEAAA 77

Query: 61  AAVAEAAETAATAAAAVAAARAVVGLGGGRNGRAIVSSVEMG 101
            A          A AA AAA AVVG+  G +G A+V +VE+G
Sbjct: 78  TA----------ADAAPAAAGAVVGVLLGGHGGAVVGAVEVG 109

The following BLAST results are available for this feature:
BLAST of Cla008396 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A059A6N3_EUCGR4.7e-1044.12Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02613 PE=4 SV=1[more]
BLAST of Cla008396 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|629082555|gb|KCW49000.1|6.8e-1044.12hypothetical protein EUGRSUZ_K02613 [Eucalyptus grandis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008396Cla008396.1mRNA