Cla008380 (gene) Watermelon (97103) v1

Overview
NameCla008380
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 9849302 .. 9849922 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATAGTGGTTTACGACCAACCCACCGAGAAAGAAACCACTACCGCCACCATTGAAGAACTCCCCCCAATTGATCCCCCCACGACCCAGCCACCCTCTGTTGAAGAGCCCCCCAGTGAAGTGCTCTCCACTCAATCATTCAACATGAGGAGCATAATAGACTTGACAACGCCCGCCGAAATGGCCGAGGTATTTATTTGATGTAATTTCATATACACATTATTTACATATGTATTCTAACAAAATTTCCATGTTGTATAGGAAAAGAAGGTGATGCCTGATCTTCGGAAGAGAAATAAGCCGACGAAGTTTTCACCAGAGGATGTGTATAGGCCGAAGAGGGAGCCAACATCCTCCAACATTGGTCCCCCCTCCCTACTGACAACCCAACCTGAACCCCTACCTTCCGAACTTCAACCTGAACCTAACTTCCCCAATCAACTTCCTAACCAACCCAACCTCAACTCCTACCTTCCGAACCTCAGCCTGAACCCCAACTTACCCAATCAACTTCCCAACCAACCCAACCTCAACTCTTACCTTCCGAACCTCAACCTCAACCCCAACTTCCCCAACCAAATTCCCAACCTTCCCAACCATCGCAACCCGAACCCTTAG

mRNA sequence

ATGGCGATAGTGGTTTACGACCAACCCACCGAGAAAGAAACCACTACCGCCACCATTGAAGAACTCCCCCCAATTGATCCCCCCACGACCCAGCCACCCTCTGTTGAAGAGCCCCCCAGTGAAGTGCTCTCCACTCAATCATTCAACATGAGGAGCATAATAGACTTGACAACGCCCGCCGAAATGGCCGAGGAAAAGAAGGTGATGCCTGATCTTCGGAAGAGAAATAAGCCGACGAAGTTTTCACCAGAGGATGTGTATAGGCCGAAGAGGGAGCCAACATCCTCCAACATTGGTCCCCCCTCCCTACTGACAACCCAACCTGAACCCCTACCTTCCGAACTTCAACCTGAACCTAACTTCCCCAATCAACTTCCTAACCAACCCAACCTCAACTCCTACCTTCCGAACCTCAGCCTGAACCCCAACTTACCCAATCAACTTCCCAACCAACCCAACCTCAACTCTTACCTTCCGAACCTCAACCTCAACCCCAACTTCCCCAACCAAATTCCCAACCTTCCCAACCATCGCAACCCGAACCCTTAG

Coding sequence (CDS)

ATGGCGATAGTGGTTTACGACCAACCCACCGAGAAAGAAACCACTACCGCCACCATTGAAGAACTCCCCCCAATTGATCCCCCCACGACCCAGCCACCCTCTGTTGAAGAGCCCCCCAGTGAAGTGCTCTCCACTCAATCATTCAACATGAGGAGCATAATAGACTTGACAACGCCCGCCGAAATGGCCGAGGAAAAGAAGGTGATGCCTGATCTTCGGAAGAGAAATAAGCCGACGAAGTTTTCACCAGAGGATGTGTATAGGCCGAAGAGGGAGCCAACATCCTCCAACATTGGTCCCCCCTCCCTACTGACAACCCAACCTGAACCCCTACCTTCCGAACTTCAACCTGAACCTAACTTCCCCAATCAACTTCCTAACCAACCCAACCTCAACTCCTACCTTCCGAACCTCAGCCTGAACCCCAACTTACCCAATCAACTTCCCAACCAACCCAACCTCAACTCTTACCTTCCGAACCTCAACCTCAACCCCAACTTCCCCAACCAAATTCCCAACCTTCCCAACCATCGCAACCCGAACCCTTAG

Protein sequence

MAIVVYDQPTEKETTTATIEELPPIDPPTTQPPSVEEPPSEVLSTQSFNMRSIIDLTTPAEMAEEKKVMPDLRKRNKPTKFSPEDVYRPKREPTSSNIGPPSLLTTQPEPLPSELQPEPNFPNQLPNQPNLNSYLPNLSLNPNLPNQLPNQPNLNSYLPNLNLNPNFPNQIPNLPNHRNPNP
Homology
[Close]
BLAST of Cla008380 vs. Swiss-Prot
Match: SSP2_PLAYO (Sporozoite surface protein 2 OS=Plasmodium yoelii yoelii GN=SSP2 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 46/140 (32.86%), Postives = 56/140 (40.00%), Query Frame = 1 

Query: 53  IIDLTTPAEMAEEKKV-MPDLRKRNKPTKFS----------PEDVYRPKREPTSSNIGPP 112
           + ++TTP ++ +  ++ +P +     P K S          P D   P      +N   P
Sbjct: 268 VSEMTTPCKVRDCPQIPIPPVIPNKIPEKPSNPEEPVNPNDPNDPNNPNNPNNPNNPNNP 327

Query: 113 SLLTTQPEPLPSELQPEPNFPNQLPNQPNLNSYLPNLSLNPNLPNQLPNQPNLNSYLPNL 172
           +       P        PN PN  PN PN N   PN   NPN PN  PN PN N   PN 
Sbjct: 328 NNPNNPNNPNNPNNPNNPNNPNN-PNNPN-NPNNPNNPNNPNNPNN-PNNPN-NPNNPND 387

Query: 173 NLNPNFPNQIPNLPNHRNPN 182
             NPN PN     P  RNPN
Sbjct: 388 PSNPNNPNPKKRNPKRRNPN 403

[Close]
BLAST of Cla008380 vs. NCBI nr
Match: gi|916308916|ref|WP_051043962.1| (hypothetical protein [Calothrix sp. PCC 7103])

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07
Identity = 55/186 (29.57%), Postives = 77/186 (41.40%), Query Frame = 1 

Query: 6   YDQPTEKETTTATIEELPPID----PPTTQP-PSVEEPPSEVLSTQSFNMRSIIDLTTPA 65
           + Q   +  +TA  +  PP+D    P    P P V  P  EV + +        ++  P 
Sbjct: 282 FSQRNNRNNSTAEDDTKPPVDQTPKPEVPNPKPEVPNPKPEVPNPKPEVPNPKPEVPNPK 341

Query: 66  -EMAEEKKVMPDLRKRNKPTKFSPE-DVYRPKREPTSSNIGPPSLLTTQPEPLPSELQPE 125
            E+   K  +PD     KP    P+ +V  PK E  +     P+     P+P P    P+
Sbjct: 342 PEVPNPKPEVPD----PKPEVPDPKPEVPNPKPEVPNPKPEVPNPKPEVPDPKPEVPNPK 401

Query: 126 PNFPNQLPNQPNLNSYLPNLSLNPNLPNQLPNQPNLNSYLPNLNLNPNFPNQIPNLPNHR 183
           P  PN  P  PN    +PN    P +PN  P  PN    +P  N  P  PN  P +PN +
Sbjct: 402 PEVPNPKPEVPNPKPEVPN--PKPEVPNPKPEVPNPKPEVP--NPKPEVPNPKPEVPNPK 459

[Close]
BLAST of Cla008380 vs. NCBI nr
Match: gi|916308916|ref|WP_051043962.1| (hypothetical protein [Calothrix sp. PCC 7103])

HSP 1 Score: 57.0 bits (136), Expect = 4.0e-05
Identity = 49/182 (26.92%), Postives = 75/182 (41.21%), Query Frame = 1 

Query: 11  EKETTTATIEELPPIDPPTTQPPSV--------EEPPSEVLSTQSFNMRSIIDLTTPAEM 70
           + ET+ A  ++ P   P T + PS         E   + V   +S  + +I+D +     
Sbjct: 222 QAETSAALAKQSPISGPGTIKDPSFVKLSTTSEETSDTSVYLPESDKVDAIVDYS----- 281

Query: 71  AEEKKVMPDLRKRNKPTKFSPEDVYRPKREPTSSNIGPPSLLTTQPEPLPSELQPEPNFP 130
               +V P+  +RN     + ED  +P  + T      P +    P P P    P+P  P
Sbjct: 282 ----QVQPNFSQRNNRNNSTAEDDTKPPVDQTPK----PEV----PNPKPEVPNPKPEVP 341

Query: 131 NQLPNQPNLNSYLPNLSLNPNLPNQLPNQPNLNSYLPNLNLNPNFPNQIPNLPNHRN--P 183
           N  P  PN    +PN    P +PN  P  P+    +P  +  P  PN  P +PN +   P
Sbjct: 342 NPKPEVPNPKPEVPN--PKPEVPNPKPEVPDPKPEVP--DPKPEVPNPKPEVPNPKPEVP 382


HSP 2 Score: 56.6 bits (135), Expect = 5.2e-05
Identity = 51/182 (28.02%), Postives = 75/182 (41.21%), Query Frame = 1 

Query: 10  TEKETTTATIEELPPIDPP------TTQPPSVEEPPSEVLSTQSFNMRSIIDLTTPAEMA 69
           T  E T+ T   LP  D        +   P+  +  +   ST   + +  +D T   E+ 
Sbjct: 251 TTSEETSDTSVYLPESDKVDAIVDYSQVQPNFSQRNNRNNSTAEDDTKPPVDQTPKPEVP 310

Query: 70  EEKKVMPDLRKRNKPTKFSPE-DVYRPKREPTSSNIGPPSLLTTQPEPLPSELQPEPNFP 129
             K  +P+     KP   +P+ +V  PK E  +     P+     P+P P    P+P  P
Sbjct: 311 NPKPEVPN----PKPEVPNPKPEVPNPKPEVPNPKPEVPNPKPEVPDPKPEVPDPKPEVP 370

Query: 130 NQLPNQPNLNSYLPNLSLNPNLPNQLPNQPNLNSYLPNLNLNPNFPNQIPNLPNHRN--P 183
           N  P  PN    +PN    P +P+  P  PN    +P  N  P  PN  P +PN +   P
Sbjct: 371 NPKPEVPNPKPEVPN--PKPEVPDPKPEVPNPKPEVP--NPKPEVPNPKPEVPNPKPEVP 424


HSP 3 Score: 56.6 bits (135), Expect = 5.2e-05
Identity = 52/179 (29.05%), Postives = 71/179 (39.66%), Query Frame = 1 

Query: 9   PTEKETTTATIEELPPIDPPTTQP-PSVEEPPSEVLSTQSFNMRSIIDLTTPA-EMAEEK 68
           P  K        E+P   P    P P V +P  EV   +        ++  P  E+   K
Sbjct: 324 PNPKPEVPNPKPEVPNPKPEVPNPKPEVPDPKPEVPDPKPEVPNPKPEVPNPKPEVPNPK 383

Query: 69  KVMPDLRKRNKPTKFSPE-DVYRPKREPTSSNIGPPSLLTTQPEPLPSELQPEPNFPNQL 128
             +PD     KP   +P+ +V  PK E  +     P+     P P P    P+P  PN  
Sbjct: 384 PEVPD----PKPEVPNPKPEVPNPKPEVPNPKPEVPNPKPEVPNPKPEVPNPKPEVPNPK 443

Query: 129 PNQPNLNSYLPNLSLNPNLPNQLPNQPNLNSYLPNLNLNPNFPNQIPNLPNHRN--PNP 183
           P  PN    +PN    P +PN  P  PN    +P  N  P  PN  P +P+ +   PNP
Sbjct: 444 PEVPNPKPEVPN--PKPEVPNPKPEVPNPKPEVP--NPKPEVPNPKPEVPDPKPEVPNP 494


HSP 4 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 54/203 (26.60%), Postives = 80/203 (39.41%), Query Frame = 1 

Query: 6   YDQPTEKETTTATIEELPPIDP------PTTQP-------------PSVEEPPSEVLSTQ 65
           + Q   +  +TA  +  PP+D       P  +P             P V  P  EV + +
Sbjct: 282 FSQRNNRNNSTAEDDTKPPVDQTPKPEVPNPKPEVPNPKPEVPNPKPEVPNPKPEVPNPK 341

Query: 66  SFNMRSIIDLTTPA-EMAEEKKVMPDLRKR---NKPTKFSPE-DVYRPKREPTSSNIGPP 125
                   ++  P  E+ + K  +P+ +      KP   +P+ +V  PK E  +     P
Sbjct: 342 PEVPNPKPEVPDPKPEVPDPKPEVPNPKPEVPNPKPEVPNPKPEVPDPKPEVPNPKPEVP 401

Query: 126 SLLTTQPEPLPSELQPEPNFPNQLPNQPNLNSYLPNLSLNPNLPNQLPNQPNLNSYLPNL 183
           +     P P P    P+P  PN  P  PN    +PN    P +PN  P  PN    +P  
Sbjct: 402 NPKPEVPNPKPEVPNPKPEVPNPKPEVPNPKPEVPN--PKPEVPNPKPEVPNPKPEVP-- 461


HSP 5 Score: 52.4 bits (124), Expect = 9.8e-04
Identity = 49/193 (25.39%), Postives = 76/193 (39.38%), Query Frame = 1 

Query: 11  EKETTTATIEELPPIDPPTTQPPSV--------EEPPSEVLSTQSFNMRSIIDLTTPA-- 70
           + ET+ A  ++ P   P T + PS         E   + V   +S  + +I+D +     
Sbjct: 222 QAETSAALAKQSPISGPGTIKDPSFVKLSTTSEETSDTSVYLPESDKVDAIVDYSQVQPN 281

Query: 71  --------EMAEEKKVMPDLRKRNKPTKFSPE-DVYRPKREPTSSNIGPPSLLTTQPEPL 130
                       E    P + +  KP   +P+ +V  PK E  +     P+     P P 
Sbjct: 282 FSQRNNRNNSTAEDDTKPPVDQTPKPEVPNPKPEVPNPKPEVPNPKPEVPNPKPEVPNPK 341

Query: 131 PSELQPEPNFPNQLPNQPNLNSYLPNLSLNPNLPNQLPNQPNLNSYLPNLNLNPNFPNQI 183
           P    P+P  P+  P  P+    +PN    P +PN  P  PN    +P  +  P  PN  
Sbjct: 342 PEVPNPKPEVPDPKPEVPDPKPEVPN--PKPEVPNPKPEVPNPKPEVP--DPKPEVPNPK 401


HSP 6 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 36/93 (38.71%), Postives = 44/93 (47.31%), Query Frame = 1 

Query: 95  SSNIGPPSLLTTQPEPLPSELQPEPNFPNQLPNQPNLNSYLPNL-----SLNPNLPNQLP 154
           +SN   P+  + +P    ++  P  N PN   NQPN NS  PN      + N N PN   
Sbjct: 418 NSNSNQPNSNSNRPNSNSNQPNPNSNQPNSNSNQPNSNSNQPNSNSNQPNSNSNQPNSNS 477

Query: 155 NQPNLNSYLPNLNLNPNFPNQIPNLPNHRNPNP 183
           NQPN NS  PN N NP      P+     NPNP
Sbjct: 478 NQPNSNSNQPNSNSNPTSTTPNPSGSTPSNPNP 510

[Close]
BLAST of Cla008380 vs. NCBI nr
Match: gi|959053895|ref|XP_014729776.1| (PREDICTED: GATA zinc finger domain-containing protein 14-like [Sturnus vulgaris])

HSP 1 Score: 59.3 bits (142), Expect = 8.0e-06
Identity = 56/191 (29.32%), Postives = 70/191 (36.65%), Query Frame = 1 

Query: 23  PPIDPPTTQP-----------PSVEEPPSEVLSTQSFNMRSIIDLTTPAEMAEEKKVMPD 82
           P  + PTT P           P+    P+ + +    N  S  ++  P E          
Sbjct: 547 PNRNSPTTNPNNHHPTPNRTNPNTNPKPNTIPNNP--NPNSNPNIPNPNENKPNTNHNAS 606

Query: 83  LRKRNKPTKFSPEDVYRPKREPTSSNIGPPSLLTTQPEPLPSELQPEPNF---PNQLPNQ 142
           +   N+ T  S    + P    T+SN  P       P P P+   P PN    PN  P  
Sbjct: 607 IHNHNRNTTNSNTYNHNPNHNRTNSNPNPNPKTNPNPHPNPNS-NPNPNTNPNPNTNPII 666

Query: 143 PNLNSYLPNLSLN--PNLPNQLPNQPNLNSYLPN--------------LNLNPNFPNQIP 183
           PN N+  PN   N  PN PN  PN PN N   PN               N NPN  N  P
Sbjct: 667 PNPNANKPNPKHNPSPNNPNPNPNNPNHNGNKPNPKHKATIHNPKRISTNTNPNNRNPTP 726

[Close]
BLAST of Cla008380 vs. NCBI nr
Match: gi|959053895|ref|XP_014729776.1| (PREDICTED: GATA zinc finger domain-containing protein 14-like [Sturnus vulgaris])

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-05
Identity = 34/93 (36.56%), Postives = 38/93 (40.86%), Query Frame = 1 

Query: 93  PTSSNIGPPSLLTTQPEPLPSELQPEPNFPNQLPNQPNLNSYLPNLSLNPNLPNQLPNQP 152
           P  +N  P  +    P P  +   P  N PN   N+PN N   PN   N   PN   N P
Sbjct: 477 PNRTNPNPNGIANPNPSPNNTNTNPNRNKPNPNANKPNHNPKYPNTKPNSKNPNPNANTP 536

Query: 153 NLNSYLPNLNLNPNFPNQIPN----LPNHRNPN 182
           N N    N N N N P   PN     PN  NPN
Sbjct: 537 NPNHNSTNNNPNRNSPTTNPNNHHPTPNRTNPN 569


HSP 2 Score: 56.6 bits (135), Expect = 5.2e-05
Identity = 40/106 (37.74%), Postives = 46/106 (43.40%), Query Frame = 1 

Query: 101 PSLLTTQPEPLPS------------ELQPEPNFPNQLPNQPNLNSYLPNLSLNPNLPNQL 160
           P+L  T P P P+              +P PN PN   N+PN N    N + N N PN  
Sbjct: 64  PTLNRTNPNPNPNPNPKHNPSRNNPNSKPNPNNPNPNANKPNPNHNATNNNPNRNSPNTN 123

Query: 161 PNQ----PNLNSYLPNLNLNPNFPNQIPNLPN--------HRNPNP 183
           PN     PN  +  PN N NPN PN  PN PN          NPNP
Sbjct: 124 PNNHIPTPNRTNPYPNPNPNPN-PNPSPNNPNPNTYPNPSRNNPNP 168


HSP 3 Score: 46.2 bits (108), Expect = 7.0e-02
Identity = 38/114 (33.33%), Postives = 45/114 (39.47%), Query Frame = 1 

Query: 82  SPEDVYRPKREPTSSNIGPPSLLTTQPEPLPSELQPEPNFPNQLPNQPNLNSYLPNLSLN 141
           +P    +P   P S     PSL    P P P+   P PN     PN    NS  PN + N
Sbjct: 375 NPSPNSQPDPNPNSKPNPTPSL--NNPNPNPNPNNPNPNGNKHNPNHSRTNSN-PNPNRN 434

Query: 142 PNLPNQLPN----QPNLNSYLPNLNLNPNFPNQIPN---------LPNHRNPNP 183
           PN P + PN    +P  N   P  N   N PN+             PN  NPNP
Sbjct: 435 PN-PKRNPNPKNAKPTGNKTNPKHNATKNNPNRNSTNTHTNNHNPTPNRTNPNP 484

The following BLAST results are available for this feature:
BLAST of Cla008380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SSP2_PLAYO1.2e-0632.86Sporozoite surface protein 2 OS=Plasmodium yoelii yoelii GN=SSP2 PE=1 SV=2[more]
BLAST of Cla008380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|916308916|ref|WP_051043962.1|4.3e-0729.57hypothetical protein [Calothrix sp. PCC 7103][more]
gi|916308916|ref|WP_051043962.1|4.0e-0526.92hypothetical protein [Calothrix sp. PCC 7103][more]
gi|959053895|ref|XP_014729776.1|8.0e-0629.32PREDICTED: GATA zinc finger domain-containing protein 14-like [Sturnus vulgaris][more]
gi|959053895|ref|XP_014729776.1|2.3e-0536.56PREDICTED: GATA zinc finger domain-containing protein 14-like [Sturnus vulgaris][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008380Cla008380.1mRNA