Cla008331 (gene) Watermelon (97103) v1

Overview
NameCla008331
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionGag-Pol polyprotein (AHRD V1 ***- B8YLY4_MEDTR)
LocationChr1 : 10325531 .. 10325914 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGCTTTATGAGTTCAGTAAAGTTTGATGTGGAAAAATTTGATGGAAGTGTCAACTTCGACTTGTGGCAAGTGCAAGCTAAGGATGTGTTGATACAAGCTTGGTTACACAAGGTCTTGAAGGGAAGACCAGGCAGTGGTGCTACTAAAGAGTTAAGTGATGATGATAGTCCAGGAAAGTCCAACGGTGGTTCCATTAAAGGTTCTAAGAAGTCCAGCATGAGCGATGAAGATTGGGAGGAGATGGATTTGAGAGCTGCAAGTGCGTTTAGGCTAAATTTGGTTAAGAATGTTCTTTCAAATGTGCATGGGATTTCAATAGCCAAAGAACTTTGGGAGCATCTTGAAGTAATGTATCAAGCAAAGAGCATCTCAAATTGA

mRNA sequence

ATGTCAAGCTTTATGAGTTCAGTAAAGTTTGATGTGGAAAAATTTGATGGAAGTGTCAACTTCGACTTGTGGCAAGTGCAAGCTAAGGATGTGTTGATACAAGCTTGGTTACACAAGGTCTTGAAGGGAAGACCAGGCAGTGGTGCTACTAAAGAGTTAAGTGATGATGATAGTCCAGGAAAGTCCAACGGTGGTTCCATTAAAGGTTCTAAGAAGTCCAGCATGAGCGATGAAGATTGGGAGGAGATGGATTTGAGAGCTGCAAGTGCGTTTAGGCTAAATTTGGTTAAGAATGTTCTTTCAAATGTGCATGGGATTTCAATAGCCAAAGAACTTTGGGAGCATCTTGAAGTAATGTATCAAGCAAAGAGCATCTCAAATTGA

Coding sequence (CDS)

ATGTCAAGCTTTATGAGTTCAGTAAAGTTTGATGTGGAAAAATTTGATGGAAGTGTCAACTTCGACTTGTGGCAAGTGCAAGCTAAGGATGTGTTGATACAAGCTTGGTTACACAAGGTCTTGAAGGGAAGACCAGGCAGTGGTGCTACTAAAGAGTTAAGTGATGATGATAGTCCAGGAAAGTCCAACGGTGGTTCCATTAAAGGTTCTAAGAAGTCCAGCATGAGCGATGAAGATTGGGAGGAGATGGATTTGAGAGCTGCAAGTGCGTTTAGGCTAAATTTGGTTAAGAATGTTCTTTCAAATGTGCATGGGATTTCAATAGCCAAAGAACTTTGGGAGCATCTTGAAGTAATGTATCAAGCAAAGAGCATCTCAAATTGA

Protein sequence

MSSFMSSVKFDVEKFDGSVNFDLWQVQAKDVLIQAWLHKVLKGRPGSGATKELSDDDSPGKSNGGSIKGSKKSSMSDEDWEEMDLRAASAFRLNLVKNVLSNVHGISIAKELWEHLEVMYQAKSISN
Homology
[Close]
BLAST of Cla008331 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-14
Identity = 46/123 (37.40%), Postives = 65/123 (52.85%), Query Frame = 1 

Query: 5   MSSVKFDVEKFDGSVNFDLWQVQAKDVLIQAWLHKVLKGRPGSGATKELSDDDSPGKSNG 64
           MS VK++V KF+G   F  WQ + +D+LIQ  LHKVL             D DS      
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVL-------------DVDS------ 60

Query: 65  GSIKGSKKSSMSDEDWEEMDLRAASAFRLNLVKNVLSNVHGISIAKELWEHLEVMYQAKS 124
                 K  +M  EDW ++D RAASA RL+L  +V++N+     A+ +W  LE +Y +K+
Sbjct: 61  -----KKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKT 99

Query: 125 ISN 128
           ++N
Sbjct: 121 LTN 99

[Close]
BLAST of Cla008331 vs. TrEMBL
Match: A0A0A0LQV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406750 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-19
Identity = 57/112 (50.89%), Postives = 70/112 (62.50%), Query Frame = 1 

Query: 14  KFDGSVNFDLWQVQA-KDVLIQAWLHKVLKGRPGSGATKELSDDDSPGKSNGGSIKGSKK 73
           KFDG +NF LWQ+QA KDVLIQ  LHK +KGR                          + 
Sbjct: 211 KFDGRINFGLWQLQAVKDVLIQVGLHKGVKGR--------------------------QD 270

Query: 74  SSMSDEDWEEMDLRAASAFRLNLVKNVLSNVHGISIAKELWEHLEVMYQAKS 125
           ++MSDE+WEEMDLRA S  RLNL KN+++NV  IS AK+LWE LE MYQA++
Sbjct: 271 TNMSDEEWEEMDLRAISVIRLNLAKNIIANVDRISTAKQLWEKLEAMYQARA 296

[Close]
BLAST of Cla008331 vs. TrEMBL
Match: V4T614_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023471mg PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-16
Identity = 54/97 (55.67%), Postives = 63/97 (64.95%), Query Frame = 1 

Query: 31  VLIQAWLHKVLKGRPGSGATKELSDDDSPGKSNGGSIKGSKKSSMSDEDWEEMDLRAASA 90
           VLIQ  LHK L+G+P            SP  ++G     S K+S+SDEDWEE+D RAASA
Sbjct: 1   VLIQFGLHKALRGKP------------SPASNSG-----SGKASISDEDWEELDDRAASA 60

Query: 91  FRLNLVKNVLSNVHGISIAKELWEHLEVMYQAKSISN 128
            RL L KNVL+NV  I  AKELWE LE +YQ KSISN
Sbjct: 61  IRLCLAKNVLANVGNIPTAKELWEKLEKLYQTKSISN 80

[Close]
BLAST of Cla008331 vs. TrEMBL
Match: K4AWV4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-13
Identity = 47/123 (38.21%), Postives = 67/123 (54.47%), Query Frame = 1 

Query: 5   MSSVKFDVEKFDGSVNFDLWQVQAKDVLIQAWLHKVLKGRPGSGATKELSDDDSPGKSNG 64
           MS VK++V KF+G   F +WQ + +D+LIQ  LHK L G                     
Sbjct: 1   MSGVKYEVAKFNGDSGFSMWQRRMEDLLIQHGLHKALGG--------------------- 60

Query: 65  GSIKGSKKSSMSDEDWEEMDLRAASAFRLNLVKNVLSNVHGISIAKELWEHLEVMYQAKS 124
              K  K  SM  EDWEEMD +AASA RL+L  +V++N+     A ++W  LE +Y +K+
Sbjct: 61  ---KSQKPESMKLEDWEEMDEKAASAIRLHLTDDVVNNIIDEESACDIWTKLENLYMSKT 99

Query: 125 ISN 128
           ++N
Sbjct: 121 LTN 99

[Close]
BLAST of Cla008331 vs. TrEMBL
Match: K4CC58_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-13
Identity = 48/123 (39.02%), Postives = 64/123 (52.03%), Query Frame = 1 

Query: 5   MSSVKFDVEKFDGSVNFDLWQVQAKDVLIQAWLHKVLKGRPGSGATKELSDDDSPGKSNG 64
           MS VK++V KF+G   F  WQ + KD+LIQ  LHK L G                     
Sbjct: 1   MSGVKYEVAKFNGDSGFSTWQRRMKDLLIQQGLHKALGG--------------------- 60

Query: 65  GSIKGSKKSSMSDEDWEEMDLRAASAFRLNLVKNVLSNVHGISIAKELWEHLEVMYQAKS 124
              K  K  SM  EDWEEMD +AASA RL+L  +V++N+     A  +W  LE +Y +K+
Sbjct: 61  ---KSKKSESMKLEDWEEMDEKAASAIRLHLTDDVVNNIIDEESACGIWTKLENLYMSKT 99

Query: 125 ISN 128
           + N
Sbjct: 121 LRN 99

[Close]
BLAST of Cla008331 vs. TrEMBL
Match: K4B6D6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-13
Identity = 48/123 (39.02%), Postives = 65/123 (52.85%), Query Frame = 1 

Query: 5   MSSVKFDVEKFDGSVNFDLWQVQAKDVLIQAWLHKVLKGRPGSGATKELSDDDSPGKSNG 64
           MS VK++VEKF+G   F  WQ + KD+LIQ  LHK L G                     
Sbjct: 1   MSGVKYEVEKFNGDSGFSTWQRRMKDLLIQQGLHKALGG--------------------- 60

Query: 65  GSIKGSKKSSMSDEDWEEMDLRAASAFRLNLVKNVLSNVHGISIAKELWEHLEVMYQAKS 124
              K  K  SM  EDWEEMD +AASA RL+L  +V++N+        +W  LE +Y +K+
Sbjct: 61  ---KFKKPESMKLEDWEEMDEKAASAIRLHLTDDVVNNIIDEESTCGIWTKLENLYMSKT 99

Query: 125 ISN 128
           ++N
Sbjct: 121 LTN 99

[Close]
BLAST of Cla008331 vs. NCBI nr
Match: gi|700208058|gb|KGN63177.1| (hypothetical protein Csa_2G406750 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 57/112 (50.89%), Postives = 70/112 (62.50%), Query Frame = 1 

Query: 14  KFDGSVNFDLWQVQA-KDVLIQAWLHKVLKGRPGSGATKELSDDDSPGKSNGGSIKGSKK 73
           KFDG +NF LWQ+QA KDVLIQ  LHK +KGR                          + 
Sbjct: 211 KFDGRINFGLWQLQAVKDVLIQVGLHKGVKGR--------------------------QD 270

Query: 74  SSMSDEDWEEMDLRAASAFRLNLVKNVLSNVHGISIAKELWEHLEVMYQAKS 125
           ++MSDE+WEEMDLRA S  RLNL KN+++NV  IS AK+LWE LE MYQA++
Sbjct: 271 TNMSDEEWEEMDLRAISVIRLNLAKNIIANVDRISTAKQLWEKLEAMYQARA 296

[Close]
BLAST of Cla008331 vs. NCBI nr
Match: gi|567899860|ref|XP_006442418.1| (hypothetical protein CICLE_v10023471mg, partial [Citrus clementina])

HSP 1 Score: 92.4 bits (228), Expect = 6.0e-16
Identity = 54/97 (55.67%), Postives = 63/97 (64.95%), Query Frame = 1 

Query: 31  VLIQAWLHKVLKGRPGSGATKELSDDDSPGKSNGGSIKGSKKSSMSDEDWEEMDLRAASA 90
           VLIQ  LHK L+G+P            SP  ++G     S K+S+SDEDWEE+D RAASA
Sbjct: 1   VLIQFGLHKALRGKP------------SPASNSG-----SGKASISDEDWEELDDRAASA 60

Query: 91  FRLNLVKNVLSNVHGISIAKELWEHLEVMYQAKSISN 128
            RL L KNVL+NV  I  AKELWE LE +YQ KSISN
Sbjct: 61  IRLCLAKNVLANVGNIPTAKELWEKLEKLYQTKSISN 80

[Close]
BLAST of Cla008331 vs. NCBI nr
Match: gi|130582|sp|P10978.1|POLX_TOBAC (RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Includes: RecName: Full=Protease; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Endonuclease)

HSP 1 Score: 79.3 bits (194), Expect = 5.2e-12
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 1 

Query: 5   MSSVKFDVEKFDGSVNFDLWQVQAKDVLIQAWLHKVLKGRPGSGATKELSDDDSPGKSNG 64
           MS VK++V KF+G   F  WQ + +D+LIQ  LHKVL             D DS      
Sbjct: 1   MSGVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVL-------------DVDS------ 60

Query: 65  GSIKGSKKSSMSDEDWEEMDLRAASAFRLNLVKNVLSNVHGISIAKELWEHLEVMYQAKS 124
                 K  +M  EDW ++D RAASA RL+L  +V++N+     A+ +W  LE +Y +K+
Sbjct: 61  -----KKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKT 99

Query: 125 ISN 128
           ++N
Sbjct: 121 LTN 99

[Close]
BLAST of Cla008331 vs. NCBI nr
Match: gi|1012360036|gb|KYP71220.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 79.3 bits (194), Expect = 5.2e-12
Identity = 49/124 (39.52%), Postives = 64/124 (51.61%), Query Frame = 1 

Query: 5   MSSV-KFDVEKFDGSVNFDLWQVQAKDVLIQAWLHKVLKGRPGSGATKELSDDDSPGKSN 64
           MS+V KFD+EKFDG + F +W+VQ K VL Q  L K L G                    
Sbjct: 1   MSTVTKFDIEKFDGKICFSIWKVQMKAVLTQNGLKKALDG-------------------- 60

Query: 65  GGSIKGSKKSSMSDEDWEEMDLRAASAFRLNLVKNVLSNVHGISIAKELWEHLEVMYQAK 124
               K  K  +M+DE W+E+D +A SA +L L K VL  V   + A  LW  LE +Y  K
Sbjct: 61  ----KAKKPVNMTDEQWDELDEKALSAIQLCLSKEVLREVANETTAAALWLKLESLYMTK 100

Query: 125 SISN 128
           S++N
Sbjct: 121 SLAN 100

[Close]
BLAST of Cla008331 vs. NCBI nr
Match: gi|731361723|ref|XP_010692517.1| (PREDICTED: uncharacterized protein LOC104905624 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 79.3 bits (194), Expect = 5.2e-12
Identity = 46/120 (38.33%), Postives = 64/120 (53.33%), Query Frame = 1 

Query: 8   VKFDVEKFDGSVNFDLWQVQAKDVLIQAWLHKVLKGRPGSGATKELSDDDSPGKSNGGSI 67
           +K D+EKFD S+NF LWQV+ K +LIQ  +HK L+G                        
Sbjct: 1   MKLDIEKFDRSINFGLWQVKMKALLIQNGVHKALEG------------------------ 60

Query: 68  KGSKKSSMSDEDWEEMDLRAASAFRLNLVKNVLSNVHGISIAKELWEHLEVMYQAKSISN 127
           K  K ++M++E WEE+DL+A  A +L L   VL  V     +  LW  LE +Y AKS++N
Sbjct: 61  KVKKPTTMTEEKWEELDLKALLAIQLCLSNEVLREVAKEDSSAGLWLKLESLYMAKSVTN 96

The following BLAST results are available for this feature:
BLAST of Cla008331 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC3.3e-1437.40Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of Cla008331 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQV2_CUCSA1.1e-1950.89Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406750 PE=4 SV=1[more]
V4T614_9ROSI4.2e-1655.67Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10023471mg PE=... [more]
K4AWV4_SOLLC1.1e-1338.21Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
K4CC58_SOLLC2.5e-1339.02Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
K4B6D6_SOLLC2.5e-1339.02Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of Cla008331 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208058|gb|KGN63177.1|1.5e-1950.89hypothetical protein Csa_2G406750 [Cucumis sativus][more]
gi|567899860|ref|XP_006442418.1|6.0e-1655.67hypothetical protein CICLE_v10023471mg, partial [Citrus clementina][more]
gi|130582|sp|P10978.1|POLX_TOBAC5.2e-1237.40RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Inclu... [more]
gi|1012360036|gb|KYP71220.1|5.2e-1239.52Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|731361723|ref|XP_010692517.1|5.2e-1238.33PREDICTED: uncharacterized protein LOC104905624 [Beta vulgaris subsp. vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008331Cla008331.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 61..127
score: 5.7E-12coord: 15..43
score: 5.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla008331Cucurbita moschata (Rifu)cmowmB713
Cla008331Watermelon (Charleston Gray)wcgwmB294
Cla008331Melon (DHL92) v3.5.1mewmB064
Cla008331Melon (DHL92) v3.5.1mewmB166
Cla008331Melon (DHL92) v3.5.1mewmB279
Cla008331Watermelon (Charleston Gray)wcgwmB073
Cla008331Watermelon (Charleston Gray)wcgwmB153
Cla008331Watermelon (Charleston Gray)wcgwmB336
Cla008331Cucumber (Chinese Long) v2cuwmB041
Cla008331Cucumber (Chinese Long) v2cuwmB055
Cla008331Cucurbita pepo (Zucchini)cpewmB038
Cla008331Cucurbita pepo (Zucchini)cpewmB363
Cla008331Cucurbita pepo (Zucchini)cpewmB444
Cla008331Cucurbita pepo (Zucchini)cpewmB512
Cla008331Cucurbita pepo (Zucchini)cpewmB662
Cla008331Bottle gourd (USVL1VR-Ls)lsiwmB199
Cla008331Bottle gourd (USVL1VR-Ls)lsiwmB323
Cla008331Bottle gourd (USVL1VR-Ls)lsiwmB406
Cla008331Cucumber (Gy14) v2cgybwmB042
Cla008331Cucumber (Gy14) v2cgybwmB055
Cla008331Cucumber (Gy14) v2cgybwmB245
Cla008331Cucumber (Gy14) v2cgybwmB394
Cla008331Melon (DHL92) v3.6.1medwmB063
Cla008331Melon (DHL92) v3.6.1medwmB163
Cla008331Melon (DHL92) v3.6.1medwmB272
Cla008331Silver-seed gourdcarwmB0355
Cla008331Silver-seed gourdcarwmB0490
Cla008331Silver-seed gourdcarwmB0611
Cla008331Silver-seed gourdcarwmB1006
Cla008331Cucumber (Chinese Long) v3cucwmB048
Cla008331Cucumber (Chinese Long) v3cucwmB061
Cla008331Cucumber (Chinese Long) v3cucwmB447
Cla008331Watermelon (97103) v2wmwmbB263
Cla008331Watermelon (97103) v2wmwmbB244
Cla008331Watermelon (97103) v2wmwmbB272
Cla008331Wax gourdwgowmB496
Cla008331Wax gourdwgowmB555
Cla008331Wax gourdwgowmB668
Cla008331Watermelon (97103) v1wmwmB024
Cla008331Watermelon (97103) v1wmwmB120
Cla008331Watermelon (97103) v1wmwmB149
Cla008331Cucumber (Gy14) v1cgywmB127
Cla008331Cucumber (Gy14) v1cgywmB283
Cla008331Cucumber (Gy14) v1cgywmB385
Cla008331Cucumber (Gy14) v1cgywmB525
Cla008331Cucurbita maxima (Rimu)cmawmB061
Cla008331Cucurbita maxima (Rimu)cmawmB116
Cla008331Cucurbita maxima (Rimu)cmawmB200
Cla008331Cucurbita maxima (Rimu)cmawmB378
Cla008331Cucurbita maxima (Rimu)cmawmB717
Cla008331Cucurbita moschata (Rifu)cmowmB054
Cla008331Cucurbita moschata (Rifu)cmowmB107
Cla008331Cucurbita moschata (Rifu)cmowmB187
Cla008331Cucurbita moschata (Rifu)cmowmB371