Cla008160 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008160
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein embryo defective 2735 (AHRD V1 ***- Q9FFZ3_ARATH)
Location	Chr3 : 693924 .. 694952 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCGAGGATCGTTTTGAGGAAGGTTTATGATTATATTCGGTATGATTTGAAGGAAATTGCATTTCCTTCGTCCTTGCCAGATCCTCCGCATGTAAAGAAGCGTCGGAAGCTTACATGGCATGAACGATTCTTGGTAAATTCTTATTCTTCTGTAGGTTTTGCTATTGTTTTGTTTTCTTTTGCAATTATTTAGGTATTGATTGATAAGTTCCAATCTCTGATTGAGAGGAAAAGTTAGTGGCAACAGGATTGACTTACATACGCCGAATGTATGCTCATCATTTAGTTGTTCATTGAAAATTTGATTCTGCTAAGCTCTTATTCTGTGTGTTTTTTCTGTTCTTCTACTGGTTCATAAGTATGCTCGTATTCGAATGGTGATTTTAGGTGTTGAAGGAGGCTTCTAGGTTATATGCTGCAAGCTGGGTGAGGGACATTGGTCCCGACCTACGACCAAATGACTATAAGGTAGAAGAAAGCGAAAACAAAACAAATTCAGCAAAAAGTGCACCTAAAGAGAAAGAACCTTCAACACTTGAGGACCTGGGTAATCGACCTTTGAGTTATTGTTTGATTCAGATGCTTTATATTGAAATGAAATATTTTCTTAGACTTATGATCATGTTGTGAGGCCCCTCGATTATGCATTCATATAAACGTAGGGGTAGGAAGGGAATTTTGTGAACAAGCTTGGCTTGTGGGAGAGGATTTTCAACCCTCTAAAAAGTGCTGGTAGCGAGGGTTCTCTTTATCTTCCTTGTTGTTTGTTTGGCTGTAATTTCCTAGAAGTTCATAAATAATACAACTAGAGCATGTGATAATCTTTCACAAATTGTGAAAGAGATTTTTCAGTGAGAATAAAGTTGATATTACAGAGTAATTTATAGAGAGATTTTACAACAGAAAGGGTAACCAGCTAAAACAGAAAATAACAAAAAGGTTTAACAAATATAAACTGATTTGTCAACTACTATTAACAGAGCATTGCTCTGTTTCTGGGTATTGGTTTGTTGGGAAAGCTTAA

mRNA sequence

ATGAAGGCGAGGATCGTTTTGAGGAAGGTTTATGATTATATTCGGTATGATTTGAAGGAAATTGCATTTCCTTCGTCCTTGCCAGATCCTCCGCATGTAAAGAAGCGTCGGAAGCTTACATGGCATGAACGATTCTTGGTGTTGAAGGAGGCTTCTAGGTTATATGCTGCAAGCTGGGTGAGGGACATTGGTCCCGACCTACGACCAAATGACTATAAGGTAGAAGAAAGCGAAAACAAAACAAATTCAGCAAAAAGTGCACCTAAAGAGAAAGAACCTTCAACACTTGAGGACCTGGAGCATTGCTCTGTTTCTGGGTATTGGTTTGTTGGGAAAGCTTAA

Coding sequence (CDS)

ATGAAGGCGAGGATCGTTTTGAGGAAGGTTTATGATTATATTCGGTATGATTTGAAGGAAATTGCATTTCCTTCGTCCTTGCCAGATCCTCCGCATGTAAAGAAGCGTCGGAAGCTTACATGGCATGAACGATTCTTGGTGTTGAAGGAGGCTTCTAGGTTATATGCTGCAAGCTGGGTGAGGGACATTGGTCCCGACCTACGACCAAATGACTATAAGGTAGAAGAAAGCGAAAACAAAACAAATTCAGCAAAAAGTGCACCTAAAGAGAAAGAACCTTCAACACTTGAGGACCTGGAGCATTGCTCTGTTTCTGGGTATTGGTTTGTTGGGAAAGCTTAA

Protein sequence

MKARIVLRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWVRDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDLEHCSVSGYWFVGKA

Homology

[Close]

BLAST of Cla008160 vs. TrEMBL
Match: A0A0A0LEN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778190 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.6e-43
Identity = 86/99 (86.87%), Postives = 94/99 (94.95%), Query Frame = 1


Query: 1   MKARIVLRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MKA+IVLRK+YDY+RYDLKEIAFPSSLPDPPH+KKR KL+W+ERFLVLKEASRLYAASWV
Sbjct: 1   MKAKIVLRKIYDYVRYDLKEIAFPSSLPDPPHIKKRGKLSWNERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDL 100
           RDIGP+LRP DYKV+ESENK NS K APKEKEPSTLEDL
Sbjct: 61  RDIGPELRPYDYKVKESENKPNSPKRAPKEKEPSTLEDL 99

[Close]

BLAST of Cla008160 vs. TrEMBL
Match: M5W3A7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022539mg PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.2e-40
Identity = 80/99 (80.81%), Postives = 89/99 (89.90%), Query Frame = 1


Query: 1   MKARIVLRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MK R+V RK+YDY+RYDLKEIAFPSSLPDPPH+KKRRKLTW+ERFLVLKEASRLYAASWV
Sbjct: 1   MKVRVVCRKLYDYVRYDLKEIAFPSSLPDPPHIKKRRKLTWNERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDL 100
           RDIGP+LRPND+K EESE+K    +   KEKEPSTLEDL
Sbjct: 61  RDIGPELRPNDFKDEESEDKPGRPQGPAKEKEPSTLEDL 99

[Close]

BLAST of Cla008160 vs. TrEMBL
Match: A0A059DJD7_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A02626 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-39
Identity = 81/100 (81.00%), Postives = 90/100 (90.00%), Query Frame = 1


Query: 1   MKARIVLRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MK R+V RK+YDY+RYDLKEIAFPSSLPDPPH+KKRRKLTWH+RFLVLKEASRLYAASWV
Sbjct: 125 MKLRVVCRKLYDYVRYDLKEIAFPSSLPDPPHIKKRRKLTWHDRFLVLKEASRLYAASWV 184

Query: 61  RDIGPDLRPNDYKV-EESENKTNSAKSAPKEKEPSTLEDL 100
           RDIGP+LRPNDYK  E+SE+K   AK   +EKEPSTLEDL
Sbjct: 185 RDIGPELRPNDYKKDEDSEDKPRRAKKVAEEKEPSTLEDL 224

[Close]

BLAST of Cla008160 vs. TrEMBL
Match: W9RGU0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019185 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.1e-39
Identity = 81/99 (81.82%), Postives = 88/99 (88.89%), Query Frame = 1


Query: 1   MKARIVLRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MK ++V RK+YDY+RYDLKEIAFPSSL DPPH+KKRRKLTW ERFLVLKEASRLYAASWV
Sbjct: 1   MKVKVVCRKIYDYVRYDLKEIAFPSSLSDPPHIKKRRKLTWRERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDL 100
           RDIGPDLRPNDYK  + E+K N AKS  KEKEPSTLEDL
Sbjct: 61  RDIGPDLRPNDYK--KDEDKPNEAKSQKKEKEPSTLEDL 97

[Close]

BLAST of Cla008160 vs. TrEMBL
Match: A0A0D2NT30_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G152500 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-38
Identity = 78/100 (78.00%), Postives = 89/100 (89.00%), Query Frame = 1


Query: 1   MKARIVLRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MK ++V RK+YDY+RYDLKEIAFPSSLPDPPH+KKRRKLTWHERFLVLKEASRLYAASWV
Sbjct: 1   MKVKVVCRKLYDYVRYDLKEIAFPSSLPDPPHIKKRRKLTWHERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEE-SENKTNSAKSAPKEKEPSTLEDL 100
           RDIGPDLRPNDYK ++ +E+K+N  KS   E EPS LED+
Sbjct: 61  RDIGPDLRPNDYKKDDGTEDKSNGDKSRSTETEPSALEDI 100

[Close]

BLAST of Cla008160 vs. NCBI nr
Match: gi|659084416|ref|XP_008442875.1| (PREDICTED: uncharacterized protein LOC103486641 [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 3.2e-45
Identity = 89/99 (89.90%), Postives = 96/99 (96.97%), Query Frame = 1


Query: 1   MKARIVLRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MKA+IV RK+YDY+RYDLKEIAFPSSLPDPPHVKKR KLTWH+RFLVLKEASRLYAASWV
Sbjct: 1   MKAKIVFRKIYDYVRYDLKEIAFPSSLPDPPHVKKRPKLTWHDRFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDL 100
           RDIGP+LRP++YKVEESENKTNS KSAPKEKEPSTLEDL
Sbjct: 61  RDIGPELRPHEYKVEESENKTNSPKSAPKEKEPSTLEDL 99

[Close]

BLAST of Cla008160 vs. NCBI nr
Match: gi|449437428|ref|XP_004136494.1| (PREDICTED: uncharacterized protein LOC101202894 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 5.1e-43
Identity = 86/99 (86.87%), Postives = 94/99 (94.95%), Query Frame = 1


Query: 1   MKARIVLRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MKA+IVLRK+YDY+RYDLKEIAFPSSLPDPPH+KKR KL+W+ERFLVLKEASRLYAASWV
Sbjct: 1   MKAKIVLRKIYDYVRYDLKEIAFPSSLPDPPHIKKRGKLSWNERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDL 100
           RDIGP+LRP DYKV+ESENK NS K APKEKEPSTLEDL
Sbjct: 61  RDIGPELRPYDYKVKESENKPNSPKRAPKEKEPSTLEDL 99

[Close]

BLAST of Cla008160 vs. NCBI nr
Match: gi|470108076|ref|XP_004290361.1| (PREDICTED: uncharacterized protein LOC101291194 [Fragaria vesca subsp. vesca])

HSP 1 Score: 172.2 bits (435), Expect = 5.3e-40
Identity = 83/100 (83.00%), Postives = 90/100 (90.00%), Query Frame = 1


Query: 1   MKARIVLRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MK R+V RKV DYIRYDLKEIAFPSSLPDPPH+KKRRKLTWHERFLVLKEASRLY ASWV
Sbjct: 1   MKVRVVYRKVRDYIRYDLKEIAFPSSLPDPPHIKKRRKLTWHERFLVLKEASRLYCASWV 60

Query: 61  RDIGPDLRPNDY-KVEESENKTNSAKSAPKEKEPSTLEDL 100
           RDIGP+LRPNDY K EESEN+ + +KS  K+KEPSTLEDL
Sbjct: 61  RDIGPELRPNDYKKYEESENEPSGSKSTTKDKEPSTLEDL 100

[Close]

BLAST of Cla008160 vs. NCBI nr
Match: gi|694409934|ref|XP_009379580.1| (PREDICTED: uncharacterized protein LOC103967976 [Pyrus x bretschneideri])

HSP 1 Score: 171.4 bits (433), Expect = 9.0e-40
Identity = 81/99 (81.82%), Postives = 88/99 (88.89%), Query Frame = 1


Query: 1   MKARIVLRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MK R+V RKV DYIRYDLKEIAFPSSLPDPPH+KKRRKLTWHERFLVLKEASRLYAASWV
Sbjct: 1   MKVRVVCRKVCDYIRYDLKEIAFPSSLPDPPHIKKRRKLTWHERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDL 100
           RD+GP+LRPNDYK EESE++   A+   K KEPSTLEDL
Sbjct: 61  RDVGPELRPNDYKNEESEDRPGGAQGMAKGKEPSTLEDL 99

[Close]

BLAST of Cla008160 vs. NCBI nr
Match: gi|694380423|ref|XP_009366345.1| (PREDICTED: uncharacterized protein LOC103956127 [Pyrus x bretschneideri])

HSP 1 Score: 171.4 bits (433), Expect = 9.0e-40
Identity = 81/99 (81.82%), Postives = 88/99 (88.89%), Query Frame = 1


Query: 1   MKARIVLRKVYDYIRYDLKEIAFPSSLPDPPHVKKRRKLTWHERFLVLKEASRLYAASWV 60
           MK R+V RKV DYIRYDLKEIAFPSSLPDPPH+KKRRKLTWHERFLVLKEASRLYAASWV
Sbjct: 1   MKVRVVCRKVCDYIRYDLKEIAFPSSLPDPPHIKKRRKLTWHERFLVLKEASRLYAASWV 60

Query: 61  RDIGPDLRPNDYKVEESENKTNSAKSAPKEKEPSTLEDL 100
           RD+GP+LRPNDYK EESE++   A+   K KEPSTLEDL
Sbjct: 61  RDVGPELRPNDYKNEESEDRPGGAQGMAKGKEPSTLEDL 99

The following BLAST results are available for this feature:

BLAST of Cla008160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEN2_CUCSA	3.6e-43	86.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778190 PE=4 SV=1	[more]
M5W3A7_PRUPE	8.2e-40	80.81	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022539mg PE=4 SV=1	[more]
A0A059DJD7_EUCGR	1.1e-39	81.00	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A02626 PE=4 ...	[more]
W9RGU0_9ROSA	3.1e-39	81.82	Uncharacterized protein OS=Morus notabilis GN=L484_019185 PE=4 SV=1	[more]
A0A0D2NT30_GOSRA	1.5e-38	78.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G152500 PE=4 SV=1	[more]

BLAST of Cla008160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084416\|ref\|XP_008442875.1\|	3.2e-45	89.90	PREDICTED: uncharacterized protein LOC103486641 [Cucumis melo]	[more]
gi\|449437428\|ref\|XP_004136494.1\|	5.1e-43	86.87	PREDICTED: uncharacterized protein LOC101202894 [Cucumis sativus]	[more]
gi\|470108076\|ref\|XP_004290361.1\|	5.3e-40	83.00	PREDICTED: uncharacterized protein LOC101291194 [Fragaria vesca subsp. vesca]	[more]
gi\|694409934\|ref\|XP_009379580.1\|	9.0e-40	81.82	PREDICTED: uncharacterized protein LOC103967976 [Pyrus x bretschneideri]	[more]
gi\|694380423\|ref\|XP_009366345.1\|	9.0e-40	81.82	PREDICTED: uncharacterized protein LOC103956127 [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU40684	watermelon EST collection version 2.0	transcribed_cluster
WMU59163	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008160	Cla008160.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU40684	WMU40684	transcribed_cluster
WMU59163	WMU59163	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36064	FAMILY NOT NAMED	coord: 2..99 score: 2.8
None	No IPR available	PANTHER	PTHR36064:SF1	PROTEIN EMBRYO DEFECTIVE 2735	coord: 2..99 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla008160	Cla97C03G051520	Watermelon (97103) v2	wmwmbB124
Cla008160	ClCG03G000710	Watermelon (Charleston Gray)	wcgwmB223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla008160	Melon (DHL92) v3.6.1	medwmB143
Cla008160	Melon (DHL92) v3.6.1	medwmB353
Cla008160	Silver-seed gourd	carwmB0150
Cla008160	Silver-seed gourd	carwmB0376
Cla008160	Silver-seed gourd	carwmB0662
Cla008160	Silver-seed gourd	carwmB0997
Cla008160	Cucumber (Chinese Long) v3	cucwmB026
Cla008160	Cucumber (Chinese Long) v3	cucwmB409
Cla008160	Cucumber (Chinese Long) v3	cucwmB508
Cla008160	Watermelon (97103) v2	wmwmbB115
Cla008160	Watermelon (97103) v2	wmwmbB139
Cla008160	Wax gourd	wgowmB325
Cla008160	Wax gourd	wgowmB369
Cla008160	Wax gourd	wgowmB471
Cla008160	Watermelon (97103) v1	wmwmB041
Cla008160	Watermelon (97103) v1	wmwmB081
Cla008160	Watermelon (97103) v1	wmwmB089
Cla008160	Watermelon (97103) v1	wmwmB096
Cla008160	Cucumber (Gy14) v1	cgywmB229
Cla008160	Cucumber (Gy14) v1	cgywmB255
Cla008160	Cucumber (Gy14) v1	cgywmB335
Cla008160	Cucurbita maxima (Rimu)	cmawmB185
Cla008160	Cucurbita maxima (Rimu)	cmawmB231
Cla008160	Cucurbita maxima (Rimu)	cmawmB429
Cla008160	Cucurbita maxima (Rimu)	cmawmB673
Cla008160	Cucurbita maxima (Rimu)	cmawmB675
Cla008160	Cucurbita maxima (Rimu)	cmawmB793
Cla008160	Cucurbita moschata (Rifu)	cmowmB173
Cla008160	Cucurbita moschata (Rifu)	cmowmB216
Cla008160	Cucurbita moschata (Rifu)	cmowmB422
Cla008160	Cucurbita moschata (Rifu)	cmowmB548
Cla008160	Cucurbita moschata (Rifu)	cmowmB668
Cla008160	Cucurbita moschata (Rifu)	cmowmB669
Cla008160	Cucurbita moschata (Rifu)	cmowmB787
Cla008160	Melon (DHL92) v3.5.1	mewmB146
Cla008160	Melon (DHL92) v3.5.1	mewmB355
Cla008160	Watermelon (Charleston Gray)	wcgwmB064
Cla008160	Cucumber (Chinese Long) v2	cuwmB021
Cla008160	Cucumber (Chinese Long) v2	cuwmB482
Cla008160	Cucumber (Chinese Long) v2	cuwmB213
Cla008160	Cucurbita pepo (Zucchini)	cpewmB507
Cla008160	Cucurbita pepo (Zucchini)	cpewmB400
Cla008160	Cucurbita pepo (Zucchini)	cpewmB551
Cla008160	Bottle gourd (USVL1VR-Ls)	lsiwmB056
Cla008160	Bottle gourd (USVL1VR-Ls)	lsiwmB185
Cla008160	Bottle gourd (USVL1VR-Ls)	lsiwmB250
Cla008160	Cucumber (Gy14) v2	cgybwmB023
Cla008160	Cucumber (Gy14) v2	cgybwmB358
Cla008160	Cucumber (Gy14) v2	cgybwmB452