Cla008151 (gene) Watermelon (97103) v1

Overview
NameCla008151
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRan-specific GTPase-activating protein (AHRD V1 *-*- C1GEC9_PARBD); contains Interpro domain(s) IPR000156 Ran Binding Protein 1
LocationChr3 : 561196 .. 563925 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGCACCGATACCGAACGCAGAGAAGAGGAGGAGGCTCCGGCCGGAGAGGATGAAGACACTGGAGCTCAAGTTGCCCCAATCGTGAAGTTGGAGGAGGTCACCGTCACCACCGGTGAAGAAAATGAAGACGCTATTCTCGATCTGTATGCTTTTCTCTTTACTTCTTTATCTGATCTGCTCAATCTAGGTTTTAATCTTATTTCTTCATGTGGGTTATTCGTATTCGTTGTTTTAGGAAATCCAAACTGTACCGATTCGATAAAGATGGAAATCAATGGAAGGAGAGGGGTGCTGGTACTGTTAAGTTTTTGAAACATAAGGAGACTGGCAAGGTTCGTCTTGTTATGAGACAGTCTAAAACCCTCAAGATCTGCGCTAACCATTTAGGTTCGTCCTCAGTTCACTACTTGTTCCTTCGCCTATATATCAAACTTCTTTGAGTTAATGTCTTTTTTTTTTTTATTATTATTATTTTATTATTTTTTTGTGTTTCTTCTTGATTTAGCTTTAGTTCTTCCATCTTATCGTTTGATTTGTCGTGATTGTAGTACTTCCATCAATGACGGTTCAAGAACACGTTGGAAATGAGAAGTCGTGCGTGTGGCATGCGACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTTTGCATCAGATTCCCATCTATTGATAGTGAGTACAACTCTGAATCTTTTTTCTCTCTAAACCTTGGCTATAGATTGACTGATAGACTCTTCTAGACTTTGGAAATATTGATATCTGGTAGTGGGCAATATTAGTGTTAAAAATGAATCTTTATATTGTTTCACGTTTTGTGTTTTCTTTTCCCCTTCGGGATAAATTATATGTGAGTGCTTTCTAATTGTGTGGTTGTGTCCGGTTCGAAGTATCACTAGGATAATTCTTTTCACTGACAATCTAATCTTATTCGTTTTCTTGTTGTTTTGTATCTGCTTTTTATGCAGTTTGGTTTGTACAGTTTTTCATCATAAGAAATTGCAATATTGTCGTGGTATGTTTTAAGTTGAACGTTTTCCTGATGCCTATCAATACTTAGTGCTATTAGAAATTGAAGAATGGGGTTTATTCTTAAAATCCATTGTATAGTTTTAATCCGTACATAATGGTAACTTTGTCCTTGACACTTCTACTTCTCTGCTTATTTTTACTGATTATTGACTCTATCCATGAATATATTTCTTTTTACTTTCATTTACATTTGTTTTCTCTACTAAAAAAATAGGAAGTTTACTATTCCTAGATCCATCTCTGTTAATCTGCACAGTTTCTTCAGCTATCTTATTCTCTACATGTTCACATTGTATGCCAGTTGTTTTGGCAATGGAAGAGTTGGAGTCTGTTCCTGAATGGCGGAAGTATTATATAGAGTTGCAATTCTATATAATGATAATTCGATAATAAAATTTGATAGGAAAAAGTAGGTGAAAGTTGAGTGGTTTCTTTGGCGAATAGTCGGTTGTAAGCTTACTTCAGAGGATTTTAAGTGATGATACCTAGAAGAAAAAAGCTGTTGCCCTTGGAGTTGTGGTAATGGTACTGACAGTAATGGTACGGACGGAAATTTCCCAGTTAACAATCATCTGTGGCTGCTGTTGCCCTTGGAGGTGTGTAATTGATGCATTGGATATGTTCTGGGTTTTCATCCTTAAATGCAGTGGACCTCTCTGCAGGGGATACGACAAAACTGTTCGATGTAGCTTAGGTGTTGTAATTTTATTTAGACCTCCCTCTCCATGCATCACAAGCTTTCAATGATGTCTCCAATGACTATTACTCCAAATTTGTCTAGGAATTTGGTTCTTTATCATTGTAACTCTTAATAAGGTAGATAAACCTGGATAAATAGACGTCATCCAACAGAGTGGTCCAGTTCTTTCCCTTTCTTAGGGGTGGTGAGTGATGAAGTCTTTTGAATTAATTTAAGCATCATCTCTGCCATGGCTTCATATCTTTGTGTCAGCTAGGAACTCAATCTATGACTTCTAACTCAAGTCATGGGTATTGCAGAAATCTTTTATTTGTTTGTGTTTTTGTAGTTACTAAATTATCAATCTAACAACACAGGATGTTGGATTAGTTTCTTTATACTATAGACTGCAAAACCCTCATGGAAACGTTCCTAGAAGTCCTCTAGTCCCAAAAGATAGATAGTTTCTTTTGAACTGTGCTAATCAGTTTTTTTGGGATGTCTTAAAAAATAAAAAAATTGTTGAAAAGAATTACAAATATAGCAAAATTTTACTTTCTATCTGTGATAGACTGCGATAGACCCAAATAAACATCTATTGCTTTACTAGATAGACACGAATAGATGTCTATTTGGGTCTATTGCGGTCTATCACAGATAGAAAGTGAAATTTTGTTATATTTGTAAATAGTTTGATATTTTTTCTATTTACAATAATTTTCCTTTTTTTTCCCTTGGTTATTTACTTGATCATTATTAATTCTTTTTTTGGTATTATTAGACTGCAAGACCTTCATGGAAACATTCCAAGAAGTTGCAGAGTCCCAAAAGAAGAAAGAGGAAAATAAAGATGCATCAGCAGCAGCTGGTCTACTTGAAAAGTTGAGCGTTGAAGACGAAAAGAAAGCCGAAGATAAAGCTGAAGATAAAGCTGAGGACACACCTGTAAAATCTAAGGAAGAGGATAAACCTGAGGGTGAGGCAGGGAAATCGGATGCAGAGAAGAAAGACTAG

mRNA sequence

ATGGCGAGCACCGATACCGAACGCAGAGAAGAGGAGGAGGCTCCGGCCGGAGAGGATGAAGACACTGGAGCTCAAGTTGCCCCAATCGTGAAGTTGGAGGAGGTCACCGTCACCACCGGTGAAGAAAATGAAGACGCTATTCTCGATCTGAAATCCAAACTGTACCGATTCGATAAAGATGGAAATCAATGGAAGGAGAGGGGTGCTGGTACTGTTAAGTTTTTGAAACATAAGGAGACTGGCAAGGTTCGTCTTGTTATGAGACAGTCTAAAACCCTCAAGATCTGCGCTAACCATTTAGTACTTCCATCAATGACGGTTCAAGAACACGTTGGAAATGAGAAGTCGTGCGTGTGGCATGCGACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTTTGCATCAGATTCCCATCTATTGATAACTGCAAGACCTTCATGGAAACATTCCAAGAAGTTGCAGAGTCCCAAAAGAAGAAAGAGGAAAATAAAGATGCATCAGCAGCAGCTGGTCTACTTGAAAAGTTGAGCGTTGAAGACGAAAAGAAAGCCGAAGATAAAGCTGAAGATAAAGCTGAGGACACACCTGTAAAATCTAAGGAAGAGGATAAACCTGAGGGTGAGGCAGGGAAATCGGATGCAGAGAAGAAAGACTAG

Coding sequence (CDS)

ATGGCGAGCACCGATACCGAACGCAGAGAAGAGGAGGAGGCTCCGGCCGGAGAGGATGAAGACACTGGAGCTCAAGTTGCCCCAATCGTGAAGTTGGAGGAGGTCACCGTCACCACCGGTGAAGAAAATGAAGACGCTATTCTCGATCTGAAATCCAAACTGTACCGATTCGATAAAGATGGAAATCAATGGAAGGAGAGGGGTGCTGGTACTGTTAAGTTTTTGAAACATAAGGAGACTGGCAAGGTTCGTCTTGTTATGAGACAGTCTAAAACCCTCAAGATCTGCGCTAACCATTTAGTACTTCCATCAATGACGGTTCAAGAACACGTTGGAAATGAGAAGTCGTGCGTGTGGCATGCGACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTTTGCATCAGATTCCCATCTATTGATAACTGCAAGACCTTCATGGAAACATTCCAAGAAGTTGCAGAGTCCCAAAAGAAGAAAGAGGAAAATAAAGATGCATCAGCAGCAGCTGGTCTACTTGAAAAGTTGAGCGTTGAAGACGAAAAGAAAGCCGAAGATAAAGCTGAAGATAAAGCTGAGGACACACCTGTAAAATCTAAGGAAGAGGATAAACCTGAGGGTGAGGCAGGGAAATCGGATGCAGAGAAGAAAGACTAG

Protein sequence

MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWHATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVEDEKKAEDKAEDKAEDTPVKSKEEDKPEGEAGKSDAEKKD
Homology
[Close]
BLAST of Cla008151 vs. Swiss-Prot
Match: RBP1A_ARATH (Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A PE=1 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 3.2e-86
Identity = 162/213 (76.06%), Postives = 179/213 (84.04%), Query Frame = 1 

Query: 7   ERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKDGNQWKE 66
           E R+EEEA A EDEDTGAQVAPIV+LEEV VTTGEE+EDA+LDLKSKLYRFDKD NQWKE
Sbjct: 9   EHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKE 68

Query: 67  RGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWHATDFAD 126
           RGAGTVKFLKHK TGK+RLVMRQSKTLKICANH V   M+VQEHVGNEKSCVWHA DFAD
Sbjct: 69  RGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFAD 128

Query: 127 GELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVEDEKKAE 186
           GELKDELFCIRF SI+NCKTFM+ F+EVAES+++KEE+KDA+  AGLLEKL+VE E K E
Sbjct: 129 GELKDELFCIRFASIENCKTFMQKFKEVAESEEEKEESKDAADTAGLLEKLTVE-ETKTE 188

Query: 187 DKAEDKAEDT-PVKSKEEDKPEGEAGKSDAEKK 219
           +K E KA +T   + K E+K E EA KS   KK
Sbjct: 189 EKTEAKAVETAKTEVKAEEKKESEAEKSGEAKK 220

[Close]
BLAST of Cla008151 vs. Swiss-Prot
Match: RBP1B_ARATH (Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2)

HSP 1 Score: 300.8 bits (769), Expect = 1.2e-80
Identity = 148/206 (71.84%), Postives = 172/206 (83.50%), Query Frame = 1 

Query: 5   DTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKDGNQW 64
           + E R+EEE  A EDEDTGAQVAPIV+LEEV VTTGEE+ED ILDLKSKLYRFDKDG+QW
Sbjct: 9   ERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQW 68

Query: 65  KERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWHATDF 124
           KERGAGTVKFLKH+ +GK+RLVMRQSKTLKICANHLV   M+VQEH GN+KSCVWHA DF
Sbjct: 69  KERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDF 128

Query: 125 ADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVEDEKK 184
           +DGELKDELFCIRF S++NCK FM+ F+EVAES+++KEE+KDAS  AGLLEKL+VE EK+
Sbjct: 129 SDGELKDELFCIRFASVENCKAFMQKFKEVAESEEEKEESKDASDTAGLLEKLTVE-EKE 188

Query: 185 AEDKAEDKAEDTPVKSKEEDKPEGEA 211
           +E K  +KAE+       E+K   E+
Sbjct: 189 SEKKPVEKAEENKKSEAVEEKKTEES 213

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BLAST of Cla008151 vs. Swiss-Prot
Match: RBP1C_ARATH (Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.0e-80
Identity = 153/219 (69.86%), Postives = 174/219 (79.45%), Query Frame = 1 

Query: 1   MASTDTERRE-EEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDK 60
           MAST+ ER   E+E    EDEDTGAQVAPIV+LEEV VTTGEE+EDA+LDLKSK+YRFDK
Sbjct: 1   MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVW 120
           +GNQWKERGAGTVK LKHKETGKVRLVMRQSKTLKICANHL+   M+VQEH GNEKSC+W
Sbjct: 61  EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query: 121 HATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSV 180
           HATDF+DGELKDELFCIRF SI+NCKTFME F E+AESQ+  +E+     AAGL+E LSV
Sbjct: 121 HATDFSDGELKDELFCIRFASIENCKTFMEKFTEIAESQQVGKESTQGDEAAGLIENLSV 180

Query: 181 EDEKKAEDKAEDKAEDTPVKSKEEDKPEGEAGKSDAEKK 219
           E E  +E+KA++  E  P K  +E K E    K + EKK
Sbjct: 181 E-ENISEEKAKEAEEKEPAKEDKETKKE----KVEEEKK 214

[Close]
BLAST of Cla008151 vs. Swiss-Prot
Match: RANG_MOUSE (Ran-specific GTPase-activating protein OS=Mus musculus GN=Ranbp1 PE=1 SV=2)

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-32
Identity = 78/200 (39.00%), Postives = 119/200 (59.50%), Query Frame = 1 

Query: 2   ASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRF--DK 61
           A+ D+    +      ++ +   Q  PIV L E  + T EE+E+ +  +++KL+RF  + 
Sbjct: 3   AAKDSHEDHDTSTENADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASEN 62

Query: 62  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVW 121
           D  +WKERG G VK LKHKE G +RL+MR+ KTLKICANH + P M ++ + G++++ VW
Sbjct: 63  DLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVW 122

Query: 122 HA-TDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKE-----ENKDASAAAGL 181
           +   DFAD   K EL  IRF + +N + F   F+E  +  +++E     +N +A   A  
Sbjct: 123 NTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKGPGKNDNAEKVAEK 182

Query: 182 LEKLSV-EDEKKAEDKAEDK 193
           LE LSV E  ++AE+K+E+K
Sbjct: 183 LEALSVREAREEAEEKSEEK 202

[Close]
BLAST of Cla008151 vs. Swiss-Prot
Match: RANG_BOVIN (Ran-specific GTPase-activating protein OS=Bos taurus GN=RANBP1 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-31
Identity = 75/202 (37.13%), Postives = 114/202 (56.44%), Query Frame = 1 

Query: 2   ASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRF--DK 61
           A+ DT    +      ++ +   Q  PIV L E  + T EE+E+ +  +++KL+RF  + 
Sbjct: 3   AAKDTHEDHDTSTENADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASEN 62

Query: 62  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVW 121
           D  +WKERG G VK LKHKE G +RL+MR+ KTLKICANH + P M ++ + G++++ VW
Sbjct: 63  DLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVW 122

Query: 122 HA-TDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKE-----ENKDASAAAGL 181
           +   DFAD   K EL  IRF + +N + F   F+E  +  ++KE     +N         
Sbjct: 123 NTHADFADECPKQELLAIRFLNAENAQKFKTKFEECRKEIEEKEKKGSGKNDSTEKVVEK 182

Query: 182 LEKLSVEDEKKAEDKAEDKAED 196
           LE LSV++ ++ +D A    E+
Sbjct: 183 LEALSVQEGEQPQDAAPAAVEE 204

[Close]
BLAST of Cla008151 vs. TrEMBL
Match: A0A0A0LXN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532320 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 8.0e-116
Identity = 211/219 (96.35%), Postives = 215/219 (98.17%), Query Frame = 1 

Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPA EDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAEDKAEDKAEDTPVKSKEEDKPEGEAGKSDAEKKD 220
           DEKKAEDK+EDKAEDTPVKSKEEDKPEGEAGKSDAEKKD
Sbjct: 181 DEKKAEDKSEDKAEDTPVKSKEEDKPEGEAGKSDAEKKD 219

[Close]
BLAST of Cla008151 vs. TrEMBL
Match: A0A0A0LV78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532330 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 8.0e-100
Identity = 183/219 (83.56%), Postives = 201/219 (91.78%), Query Frame = 1 

Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MASTD+ERR++EEAPAGEDEDTGAQVAPIVKLE V VTTGEE+ED +LDLK+KLYRFDKD
Sbjct: 1   MASTDSERRDDEEAPAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDTVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSMTVQEH GN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSI+NCK+FMETFQE+AESQ+KK ENKDASAAAGLLE LSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKGENKDASAAAGLLETLSVE 180

Query: 181 DEKKAEDKAEDKAEDTPVKSKEEDKPEGEAGKSDAEKKD 220
                E K EDKAE+ P K K+ED+P+GE  KS+AEKK+
Sbjct: 181 -----EKKTEDKAEEEPAKVKKEDEPKGEPEKSEAEKKN 214

[Close]
BLAST of Cla008151 vs. TrEMBL
Match: B5AJV3_CUCMN (Ran-binding protein 1 OS=Cucumis melo var. cantalupensis PE=2 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.0e-99
Identity = 184/192 (95.83%), Postives = 188/192 (97.92%), Query Frame = 1 

Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPA EDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAEDKAEDK 193
           DEKKAEDK+EDK
Sbjct: 181 DEKKAEDKSEDK 192

[Close]
BLAST of Cla008151 vs. TrEMBL
Match: F6GUQ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06880 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.5e-93
Identity = 178/219 (81.28%), Postives = 198/219 (90.41%), Query Frame = 1 

Query: 1   MASTDTERREEEEAPAG-EDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDK 60
           MAS+D ERRE+E+A A  EDEDTGAQVAPIVKLEEV VTTGEE+EDA+LDLK+KLYRFDK
Sbjct: 1   MASSDPERREDEDAAAAAEDEDTGAQVAPIVKLEEVAVTTGEEDEDAVLDLKAKLYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVW 120
           DGNQWKERGAG+VK LKHKE+GKVRLVMRQSKTLKICANHLVLP+M+VQEH GN+KSCVW
Sbjct: 61  DGNQWKERGAGSVKLLKHKESGKVRLVMRQSKTLKICANHLVLPTMSVQEHAGNDKSCVW 120

Query: 121 HATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSV 180
           HATDFADGELKDELFCIRF S++NCK+FME  QEVAESQ+KKEENKDASAAAGLLEKLSV
Sbjct: 121 HATDFADGELKDELFCIRFASVENCKSFMEKVQEVAESQQKKEENKDASAAAGLLEKLSV 180

Query: 181 EDEKKAEDKAEDKAEDTPVKSKEEDKPEGEAGKSDAEKK 219
           E EK+ EDKAE   E+ PV +KEE + E E GK+DAEKK
Sbjct: 181 E-EKETEDKAE---EEKPVAAKEEKETESEQGKTDAEKK 215

[Close]
BLAST of Cla008151 vs. TrEMBL
Match: W9RUR3_9ROSA (Ran-binding protein 1-b-like protein OS=Morus notabilis GN=L484_007590 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 3.3e-93
Identity = 175/219 (79.91%), Postives = 192/219 (87.67%), Query Frame = 1 

Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           M+S D E REEE+APA +DEDTGAQVAPIVKLEEV V+TGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MSSNDPEHREEEDAPAADDEDTGAQVAPIVKLEEVAVSTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVK LKHKETGKVRLVMRQSKTLKICANHLVLPSM+VQEH GN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           A DFADGELKDELFCIRFPS++NCK FME FQEVAESQ+KKEENKDASAAAGLLEKLSVE
Sbjct: 121 AADFADGELKDELFCIRFPSVENCKQFMEKFQEVAESQQKKEENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAEDKAEDKAEDTPVKSKEEDKPEGEAGKSDAEKKD 220
            EKK E+K    +E+ P  +KE+   + +  K D EKKD
Sbjct: 181 -EKKTEEKT---SEEAPAVAKEDKDVKSDTVKEDIEKKD 215

[Close]
BLAST of Cla008151 vs. NCBI nr
Match: gi|659115040|ref|XP_008457357.1| (PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo])

HSP 1 Score: 424.5 bits (1090), Expect = 1.1e-115
Identity = 211/219 (96.35%), Postives = 215/219 (98.17%), Query Frame = 1 

Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPA EDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAEDKAEDKAEDTPVKSKEEDKPEGEAGKSDAEKKD 220
           DEKKAEDK+EDKAEDTPVKSKEEDKPEGEAGKSDAEKKD
Sbjct: 181 DEKKAEDKSEDKAEDTPVKSKEEDKPEGEAGKSDAEKKD 219

[Close]
BLAST of Cla008151 vs. NCBI nr
Match: gi|659115038|ref|XP_008457356.1| (PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo])

HSP 1 Score: 371.7 bits (953), Expect = 8.8e-100
Identity = 183/219 (83.56%), Postives = 203/219 (92.69%), Query Frame = 1 

Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MA++D+ERR++EEA AGEDEDTGAQVAPIVKLE V VTTGEE+EDA+LDLK+KLYRFDKD
Sbjct: 1   MATSDSERRDDEEAHAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDAVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSMTVQEH GN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSI+NCK+FMETFQE+AESQ+KK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKGENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAEDKAEDKAEDTPVKSKEEDKPEGEAGKSDAEKKD 220
                E K EDKAE+ P K+K+ED+P+GE  KSDAEKK+
Sbjct: 181 -----EKKTEDKAEEEPAKAKKEDEPKGEPEKSDAEKKN 214

[Close]
BLAST of Cla008151 vs. NCBI nr
Match: gi|449455021|ref|XP_004145252.1| (PREDICTED: ran-binding protein 1 homolog a-like [Cucumis sativus])

HSP 1 Score: 371.3 bits (952), Expect = 1.1e-99
Identity = 183/219 (83.56%), Postives = 201/219 (91.78%), Query Frame = 1 

Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MASTD+ERR++EEAPAGEDEDTGAQVAPIVKLE V VTTGEE+ED +LDLK+KLYRFDKD
Sbjct: 1   MASTDSERRDDEEAPAGEDEDTGAQVAPIVKLEAVDVTTGEEDEDTVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHK+TGKVRLVMRQSKTLKICANHLVLPSMTVQEH GN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKQTGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSI+NCK+FMETFQE+AESQ+KK ENKDASAAAGLLE LSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIENCKSFMETFQEIAESQQKKGENKDASAAAGLLETLSVE 180

Query: 181 DEKKAEDKAEDKAEDTPVKSKEEDKPEGEAGKSDAEKKD 220
                E K EDKAE+ P K K+ED+P+GE  KS+AEKK+
Sbjct: 181 -----EKKTEDKAEEEPAKVKKEDEPKGEPEKSEAEKKN 214

[Close]
BLAST of Cla008151 vs. NCBI nr
Match: gi|778661748|ref|XP_011658664.1| (PREDICTED: LOW QUALITY PROTEIN: ran-binding protein 1 homolog a-like [Cucumis sativus])

HSP 1 Score: 370.9 bits (951), Expect = 1.5e-99
Identity = 184/192 (95.83%), Postives = 188/192 (97.92%), Query Frame = 1 

Query: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60
           MAS+DTERREEEEAPA EDEDTGAQVAPIVKLE V VTTGEE+EDAILDLKSKLYRFDKD
Sbjct: 1   MASSDTERREEEEAPAAEDEDTGAQVAPIVKLEAVNVTTGEEDEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120
           GNQWKERGAGTVKFLKHKETG+VRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGRVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSVE 180
           ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKK ENKDASAAAGLLEKLSVE
Sbjct: 121 ATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKVENKDASAAAGLLEKLSVE 180

Query: 181 DEKKAEDKAEDK 193
           DEKKAEDK+EDK
Sbjct: 181 DEKKAEDKSEDK 192

[Close]
BLAST of Cla008151 vs. NCBI nr
Match: gi|225434536|ref|XP_002276692.1| (PREDICTED: ran-binding protein 1 homolog b-like [Vitis vinifera])

HSP 1 Score: 350.5 bits (898), Expect = 2.1e-93
Identity = 178/219 (81.28%), Postives = 198/219 (90.41%), Query Frame = 1 

Query: 1   MASTDTERREEEEAPAG-EDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDK 60
           MAS+D ERRE+E+A A  EDEDTGAQVAPIVKLEEV VTTGEE+EDA+LDLK+KLYRFDK
Sbjct: 1   MASSDPERREDEDAAAAAEDEDTGAQVAPIVKLEEVAVTTGEEDEDAVLDLKAKLYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVW 120
           DGNQWKERGAG+VK LKHKE+GKVRLVMRQSKTLKICANHLVLP+M+VQEH GN+KSCVW
Sbjct: 61  DGNQWKERGAGSVKLLKHKESGKVRLVMRQSKTLKICANHLVLPTMSVQEHAGNDKSCVW 120

Query: 121 HATDFADGELKDELFCIRFPSIDNCKTFMETFQEVAESQKKKEENKDASAAAGLLEKLSV 180
           HATDFADGELKDELFCIRF S++NCK+FME  QEVAESQ+KKEENKDASAAAGLLEKLSV
Sbjct: 121 HATDFADGELKDELFCIRFASVENCKSFMEKVQEVAESQQKKEENKDASAAAGLLEKLSV 180

Query: 181 EDEKKAEDKAEDKAEDTPVKSKEEDKPEGEAGKSDAEKK 219
           E EK+ EDKAE   E+ PV +KEE + E E GK+DAEKK
Sbjct: 181 E-EKETEDKAE---EEKPVAAKEEKETESEQGKTDAEKK 215

The following BLAST results are available for this feature:
BLAST of Cla008151 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBP1A_ARATH3.2e-8676.06Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A PE=1 SV=1[more]
RBP1B_ARATH1.2e-8071.84Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2[more]
RBP1C_ARATH2.0e-8069.86Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1[more]
RANG_MOUSE2.7e-3239.00Ran-specific GTPase-activating protein OS=Mus musculus GN=Ranbp1 PE=1 SV=2[more]
RANG_BOVIN1.3e-3137.13Ran-specific GTPase-activating protein OS=Bos taurus GN=RANBP1 PE=2 SV=1[more]
BLAST of Cla008151 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXN6_CUCSA8.0e-11696.35Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532320 PE=4 SV=1[more]
A0A0A0LV78_CUCSA8.0e-10083.56Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532330 PE=4 SV=1[more]
B5AJV3_CUCMN1.0e-9995.83Ran-binding protein 1 OS=Cucumis melo var. cantalupensis PE=2 SV=1[more]
F6GUQ0_VITVI1.5e-9381.28Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06880 PE=4 SV=... [more]
W9RUR3_9ROSA3.3e-9379.91Ran-binding protein 1-b-like protein OS=Morus notabilis GN=L484_007590 PE=4 SV=1[more]
BLAST of Cla008151 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115040|ref|XP_008457357.1|1.1e-11596.35PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo][more]
gi|659115038|ref|XP_008457356.1|8.8e-10083.56PREDICTED: ran-binding protein 1 homolog a-like [Cucumis melo][more]
gi|449455021|ref|XP_004145252.1|1.1e-9983.56PREDICTED: ran-binding protein 1 homolog a-like [Cucumis sativus][more]
gi|778661748|ref|XP_011658664.1|1.5e-9995.83PREDICTED: LOW QUALITY PROTEIN: ran-binding protein 1 homolog a-like [Cucumis sa... [more]
gi|225434536|ref|XP_002276692.1|2.1e-9381.28PREDICTED: ran-binding protein 1 homolog b-like [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000156Ran_bind_dom
IPR011993PH-like_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0046907intracellular transport
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046907 intracellular transport
cellular_component GO:0005622 intracellular
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU39902watermelon EST collection version 2.0transcribed_cluster
WMU50188watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008151Cla008151.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU39902WMU39902transcribed_cluster
WMU50188WMU50188transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000156Ran binding domainPFAMPF00638Ran_BP1coord: 37..154
score: 1.5
IPR000156Ran binding domainSMARTSM00160ranbd_3coord: 26..154
score: 1.7
IPR000156Ran binding domainPROFILEPS50196RANBD1coord: 25..160
score: 3
IPR011993PH domain-likeGENE3DG3DSA:2.30.29.30coord: 33..160
score: 3.3
IPR011993PH domain-likeunknownSSF50729PH domain-likecoord: 24..162
score: 1.12
NoneNo IPR availablePANTHERPTHR23138RAN BINDING PROTEINcoord: 1..218
score: 3.2E
NoneNo IPR availablePANTHERPTHR23138:SF93RAN-BINDING PROTEIN 1 HOMOLOG A-RELATEDcoord: 1..218
score: 3.2E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla008151Wax gourdwgowmB325
Cla008151Wax gourdwgowmB369
Cla008151Wax gourdwgowmB471
Cla008151Watermelon (97103) v1wmwmB041
Cla008151Watermelon (97103) v1wmwmB089
Cla008151Watermelon (97103) v1wmwmB096
Cla008151Cucumber (Gy14) v1cgywmB229
Cla008151Cucumber (Gy14) v1cgywmB270
Cla008151Cucumber (Gy14) v1cgywmB335
Cla008151Cucurbita maxima (Rimu)cmawmB185
Cla008151Cucurbita maxima (Rimu)cmawmB231
Cla008151Cucurbita maxima (Rimu)cmawmB429
Cla008151Cucurbita maxima (Rimu)cmawmB673
Cla008151Cucurbita maxima (Rimu)cmawmB675
Cla008151Cucurbita maxima (Rimu)cmawmB793
Cla008151Cucurbita moschata (Rifu)cmowmB173
Cla008151Cucurbita moschata (Rifu)cmowmB216
Cla008151Cucurbita moschata (Rifu)cmowmB422
Cla008151Cucurbita moschata (Rifu)cmowmB548
Cla008151Cucurbita moschata (Rifu)cmowmB668
Cla008151Cucurbita moschata (Rifu)cmowmB669
Cla008151Cucurbita moschata (Rifu)cmowmB787
Cla008151Melon (DHL92) v3.5.1mewmB146
Cla008151Melon (DHL92) v3.5.1mewmB355
Cla008151Watermelon (Charleston Gray)wcgwmB064
Cla008151Watermelon (Charleston Gray)wcgwmB223
Cla008151Cucumber (Chinese Long) v2cuwmB021
Cla008151Cucumber (Chinese Long) v2cuwmB482
Cla008151Cucumber (Chinese Long) v2cuwmB213
Cla008151Cucurbita pepo (Zucchini)cpewmB507
Cla008151Cucurbita pepo (Zucchini)cpewmB400
Cla008151Cucurbita pepo (Zucchini)cpewmB551
Cla008151Bottle gourd (USVL1VR-Ls)lsiwmB056
Cla008151Bottle gourd (USVL1VR-Ls)lsiwmB185
Cla008151Bottle gourd (USVL1VR-Ls)lsiwmB250
Cla008151Cucumber (Gy14) v2cgybwmB023
Cla008151Cucumber (Gy14) v2cgybwmB452
Cla008151Melon (DHL92) v3.6.1medwmB143
Cla008151Melon (DHL92) v3.6.1medwmB353
Cla008151Silver-seed gourdcarwmB0150
Cla008151Silver-seed gourdcarwmB0515
Cla008151Silver-seed gourdcarwmB0614
Cla008151Silver-seed gourdcarwmB0662
Cla008151Silver-seed gourdcarwmB0997
Cla008151Cucumber (Chinese Long) v3cucwmB026
Cla008151Cucumber (Chinese Long) v3cucwmB508
Cla008151Watermelon (97103) v2wmwmbB115
Cla008151Watermelon (97103) v2wmwmbB124