Cla008026 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008026
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Os11g0545800 protein (Fragment) (AHRD V1 ***- Q0IS91_ORYSJ); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II
Location	Chr4 : 1390205 .. 1391262 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTAAGTTTTACGAAATTTGTGATTGAATCAGGTGGCGCTATATTCACATGGGGCTGGGGAGGTTCTCACGGAACCTTTTCTGTGGATGGTCATTCTTCTGGGGGTCAGCTGGTGTGCTTCTCATTTTATCATCCTTTCTTTTTAGTTTTCACTGCTCAATGAATCTGGATTTACTGCTGTATTTGTTTGCACTTTGTCGACATTTGAATATGAATGATTGAAATCTATGGTTTTGTTTGTCCTGCATTTGCTTTATGATGTCGATAGACTCAAACATAAAAGATGAAACCCAAGATAAAACAACTTGAAGTTCTTGGATCCTCTCTCTTTGGAAAACACTCAAGCTTTAACCAACTGAATCAATGCATGCCTTCACCCCTTCTTCCTCACTCTATTGTTAACAAATTACCACAACTTCTCTAACCAATTACTTTTTATTATTACTATTTTTGAATGTAGATAATACATGCATAGCACAAAGAAATAGATTAAGCCCAAATTGGACCTTGAATAGCTGTTGTAGTTTTTATTTAAAAAAGATAGTATGAAGGATTGTGAAAAAGAAGTTATTATGTACATTCAATCAATTATTAAAATATGTTTGATACGAAATCGATTAAACTTTAAGGAAATATAATACTAGAACTGCTTTTTATTTTATTTTTACTTTTCAGTTTTTGGCTGTTGTTTCGATTGTTTATATGTATTGATTGGGCTTTAATGTTGAGCAATACTTGATTTTCATTGAAGTTAGCGAGTTGTAAAAAGTTTTTACCTGGCTTTTTGTTAAAATTTATGTAGTCGAAATGAAACTGAAGGTAAAAATTCCAACACTTTATTAGTTGGGTTAATTTCAATGAAACTGAAAGTTACAACTGCTACACCTTATCCGTGAATGTGGTATGTACCCATAAAGGATCTGCTTTTAACTCTAGGGGCACGGAAGCGATGTTGACTATGTGAAACCGACAATGATCGACCTTGGAGAAAATGTGAAGGCAGTACAAGTCTCCTGTGGTTTCAACCATACCGGTGCAATACTCGAGTACAAGTGA

mRNA sequence

TATTTAAGTTTTACGAAATTTGTGATTGAATCAGGTGGCGCTATATTCACATGGGGCTGGGGAGGTTCTCACGGAACCTTTTCTGTGGATGGTCATTCTTCTGGGGGTCAGCTGGGGCACGGAAGCGATGTTGACTATGTGAAACCGACAATGATCGACCTTGGAGAAAATGTGAAGGCAGTACAAGTCTCCTGTGGTTTCAACCATACCGGTGCAATACTCGAGTACAAGTGA

Coding sequence (CDS)

TATTTAAGTTTTACGAAATTTGTGATTGAATCAGGTGGCGCTATATTCACATGGGGCTGGGGAGGTTCTCACGGAACCTTTTCTGTGGATGGTCATTCTTCTGGGGGTCAGCTGGGGCACGGAAGCGATGTTGACTATGTGAAACCGACAATGATCGACCTTGGAGAAAATGTGAAGGCAGTACAAGTCTCCTGTGGTTTCAACCATACCGGTGCAATACTCGAGTACAAGTGA

Protein sequence

YLSFTKFVIESGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHTGAILEYK

Homology

[Close]

BLAST of Cla008026 vs. TrEMBL
Match: A0A0A0L2M2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G554160 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.1e-33
Identity = 67/77 (87.01%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  YLSFTKFVIESGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKA 60
          Y +FT++ +  GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPT IDLGENVK 
Sbjct: 14 YPAFTQYNLTFGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTKIDLGENVKV 73

Query: 61 VQVSCGFNHTGAILEYK 78
          VQVSCGFNHTGAILEYK
Sbjct: 74 VQVSCGFNHTGAILEYK 90

[Close]

BLAST of Cla008026 vs. TrEMBL
Match: A0A061DS14_THECC (Regulator of chromosome condensation (RCC1) family protein isoform 1 OS=Theobroma cacao GN=TCM_001623 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.9e-28
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 11  SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHT 70
           S G +FTWGWGGSHGTFS DGHSSGGQLGHGSDVDY+KPTM+  GENVKA+Q+SCGFNHT
Sbjct: 360 SDGKVFTWGWGGSHGTFSEDGHSSGGQLGHGSDVDYIKPTMVHFGENVKALQISCGFNHT 419

Query: 71  GAILEY 77
           GAILEY
Sbjct: 420 GAILEY 425

[Close]

BLAST of Cla008026 vs. TrEMBL
Match: A0A061DJB5_THECC (Regulator of chromosome condensation (RCC1) family protein isoform 2 OS=Theobroma cacao GN=TCM_001623 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.9e-28
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 11  SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHT 70
           S G +FTWGWGGSHGTFS DGHSSGGQLGHGSDVDY+KPTM+  GENVKA+Q+SCGFNHT
Sbjct: 357 SDGKVFTWGWGGSHGTFSEDGHSSGGQLGHGSDVDYIKPTMVHFGENVKALQISCGFNHT 416

Query: 71  GAILEY 77
           GAILEY
Sbjct: 417 GAILEY 422

[Close]

BLAST of Cla008026 vs. TrEMBL
Match: A0A0J8CPU6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g078520 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.4e-27
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 11  SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHT 70
           S G +FTWGWGGSHGTFSVDGHSSGGQLGHG+DVDY++PT+IDLG N+KAV+VSCGFNHT
Sbjct: 355 SDGHVFTWGWGGSHGTFSVDGHSSGGQLGHGTDVDYIEPTVIDLGSNLKAVEVSCGFNHT 414

Query: 71  GAILEY 77
           GAI EY
Sbjct: 415 GAIYEY 420

[Close]

BLAST of Cla008026 vs. TrEMBL
Match: A0A0J8CPT4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g078520 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.4e-27
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 11  SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHT 70
           S G +FTWGWGGSHGTFSVDGHSSGGQLGHG+DVDY++PT+IDLG N+KAV+VSCGFNHT
Sbjct: 363 SDGHVFTWGWGGSHGTFSVDGHSSGGQLGHGTDVDYIEPTVIDLGSNLKAVEVSCGFNHT 422

Query: 71  GAILEY 77
           GAI EY
Sbjct: 423 GAIYEY 428

[Close]

BLAST of Cla008026 vs. NCBI nr
Match: gi|700199699|gb|KGN54857.1| (hypothetical protein Csa_4G554160 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 7.3e-33
Identity = 67/77 (87.01%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  YLSFTKFVIESGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKA 60
          Y +FT++ +  GGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPT IDLGENVK 
Sbjct: 14 YPAFTQYNLTFGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTKIDLGENVKV 73

Query: 61 VQVSCGFNHTGAILEYK 78
          VQVSCGFNHTGAILEYK
Sbjct: 74 VQVSCGFNHTGAILEYK 90

[Close]

BLAST of Cla008026 vs. NCBI nr
Match: gi|778695092|ref|XP_011653923.1| (PREDICTED: ultraviolet-B receptor UVR8 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.8e-31
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 1


Query: 11  SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHT 70
           SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPT IDLGENVK VQVSCGFNHT
Sbjct: 352 SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTKIDLGENVKVVQVSCGFNHT 411

Query: 71  GAILEYK 78
           GAILEYK
Sbjct: 412 GAILEYK 418

[Close]

BLAST of Cla008026 vs. NCBI nr
Match: gi|659083169|ref|XP_008442219.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 1.8e-31
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1


Query: 11  SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHT 70
           SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPT I+LGENVKAVQVSCGFNHT
Sbjct: 284 SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTKIELGENVKAVQVSCGFNHT 343

Query: 71  GAILEYK 78
           GAILEYK
Sbjct: 344 GAILEYK 350

[Close]

BLAST of Cla008026 vs. NCBI nr
Match: gi|659083167|ref|XP_008442218.1| (PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 1.8e-31
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1


Query: 11  SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHT 70
           SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPT I+LGENVKAVQVSCGFNHT
Sbjct: 316 SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTKIELGENVKAVQVSCGFNHT 375

Query: 71  GAILEYK 78
           GAILEYK
Sbjct: 376 GAILEYK 382

[Close]

BLAST of Cla008026 vs. NCBI nr
Match: gi|659083165|ref|XP_008442217.1| (PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform X1 [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 1.8e-31
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 1


Query: 11  SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTMIDLGENVKAVQVSCGFNHT 70
           SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPT I+LGENVKAVQVSCGFNHT
Sbjct: 353 SGGAIFTWGWGGSHGTFSVDGHSSGGQLGHGSDVDYVKPTKIELGENVKAVQVSCGFNHT 412

Query: 71  GAILEYK 78
           GAILEYK
Sbjct: 413 GAILEYK 419

The following BLAST results are available for this feature:

BLAST of Cla008026 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2M2_CUCSA	5.1e-33	87.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G554160 PE=4 SV=1	[more]
A0A061DS14_THECC	4.9e-28	84.85	Regulator of chromosome condensation (RCC1) family protein isoform 1 OS=Theobrom...	[more]
A0A061DJB5_THECC	4.9e-28	84.85	Regulator of chromosome condensation (RCC1) family protein isoform 2 OS=Theobrom...	[more]
A0A0J8CPU6_BETVU	2.4e-27	83.33	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g078520 PE=4 S...	[more]
A0A0J8CPT4_BETVU	2.4e-27	83.33	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g078520 PE=4 S...	[more]

BLAST of Cla008026 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199699\|gb\|KGN54857.1\|	7.3e-33	87.01	hypothetical protein Csa_4G554160 [Cucumis sativus]	[more]
gi\|778695092\|ref\|XP_011653923.1\|	1.8e-31	97.01	PREDICTED: ultraviolet-B receptor UVR8 [Cucumis sativus]	[more]
gi\|659083169\|ref\|XP_008442219.1\|	1.8e-31	97.01	PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Cucumis melo]	[more]
gi\|659083167\|ref\|XP_008442218.1\|	1.8e-31	97.01	PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Cucumis melo]	[more]
gi\|659083165\|ref\|XP_008442217.1\|	1.8e-31	97.01	PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000408	Reg_chr_condens
IPR009091	RCC1/BLIP-II

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008026	Cla008026.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000408	Regulator of chromosome condensation, RCC1	PFAM	PF00415	RCC1	coord: 31..73 score: 1.
IPR000408	Regulator of chromosome condensation, RCC1	PROFILE	PS50012	RCC1_3	coord: 13..76 score: 11
IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	GENE3D	G3DSA:2.130.10.30		coord: 7..74 score: 9.4
IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	unknown	SSF50985	RCC1/BLIP-II	coord: 9..75 score: 9.02

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla008026	Lsi01G019450	Bottle gourd (USVL1VR-Ls)	lsiwmB153

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla008026	Cucumber (Gy14) v2	cgybwmB308
Cla008026	Melon (DHL92) v3.6.1	medwmB574
Cla008026	Silver-seed gourd	carwmB0274
Cla008026	Silver-seed gourd	carwmB0860
Cla008026	Cucumber (Chinese Long) v3	cucwmB348
Cla008026	Watermelon (97103) v2	wmwmbB297
Cla008026	Wax gourd	wgowmB441
Cla008026	Cucumber (Gy14) v1	cgywmB644
Cla008026	Cucurbita maxima (Rimu)	cmawmB636
Cla008026	Cucurbita maxima (Rimu)	cmawmB641
Cla008026	Cucurbita maxima (Rimu)	cmawmB828
Cla008026	Cucurbita moschata (Rifu)	cmowmB819
Cla008026	Melon (DHL92) v3.5.1	mewmB586
Cla008026	Watermelon (Charleston Gray)	wcgwmB260
Cla008026	Cucumber (Chinese Long) v2	cuwmB334
Cla008026	Cucurbita pepo (Zucchini)	cpewmB493