Cla008014 (gene) Watermelon (97103) v1

Overview
NameCla008014
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSelf-incompatibility protein (Fragment) (AHRD V1 *-*- C8C1C1_9MAGN); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1
LocationChr4 : 1058027 .. 1058467 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTCATCTCCCACACTTGCACTATCTTTATTAATCTTATTTTTCACTAGCTTACATGCCATCCAAGGAGCATTCTTAATTCCACCCGAAACAACAGTCACCATCGTCAACCAAATTGAATATGGCATACCAGTCACCGTTCACTGCAAATCCAAGAACGATGACCTAGGACTCCATGTCCTTCCACTTGCAAAAAGCTACTCGTTCAAGTTCAGACCCAACCTCTTGGAGACGACGTTGTTTTACTGCAGCTTCGTATGGACTGGACAACACCAAATCTACTGGTTCAATGTCTTCGACCACAAGAGAGATGCAGGGCTTTGCACCACATGCACATGGATCATTCATGAATATAGCATGTGCTTGCAGAACCCAAAAACTGTTGACGGCAAACAAATTTGCTATAACTACGGAGATAAAGAGCCAAGCATTATGTAA

mRNA sequence

ATGGGCTCATCTCCCACACTTGCACTATCTTTATTAATCTTATTTTTCACTAGCTTACATGCCATCCAAGGAGCATTCTTAATTCCACCCGAAACAACAGTCACCATCGTCAACCAAATTGAATATGGCATACCAGTCACCGTTCACTGCAAATCCAAGAACGATGACCTAGGACTCCATGTCCTTCCACTTGCAAAAAGCTACTCGTTCAAGTTCAGACCCAACCTCTTGGAGACGACGTTGTTTTACTGCAGCTTCGTATGGACTGGACAACACCAAATCTACTGGTTCAATGTCTTCGACCACAAGAGAGATGCAGGGCTTTGCACCACATGCACATGGATCATTCATGAATATAGCATGTGCTTGCAGAACCCAAAAACTGTTGACGGCAAACAAATTTGCTATAACTACGGAGATAAAGAGCCAAGCATTATGTAA

Coding sequence (CDS)

ATGGGCTCATCTCCCACACTTGCACTATCTTTATTAATCTTATTTTTCACTAGCTTACATGCCATCCAAGGAGCATTCTTAATTCCACCCGAAACAACAGTCACCATCGTCAACCAAATTGAATATGGCATACCAGTCACCGTTCACTGCAAATCCAAGAACGATGACCTAGGACTCCATGTCCTTCCACTTGCAAAAAGCTACTCGTTCAAGTTCAGACCCAACCTCTTGGAGACGACGTTGTTTTACTGCAGCTTCGTATGGACTGGACAACACCAAATCTACTGGTTCAATGTCTTCGACCACAAGAGAGATGCAGGGCTTTGCACCACATGCACATGGATCATTCATGAATATAGCATGTGCTTGCAGAACCCAAAAACTGTTGACGGCAAACAAATTTGCTATAACTACGGAGATAAAGAGCCAAGCATTATGTAA

Protein sequence

MGSSPTLALSLLILFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVTVHCKSKNDDLGLHVLPLAKSYSFKFRPNLLETTLFYCSFVWTGQHQIYWFNVFDHKRDAGLCTTCTWIIHEYSMCLQNPKTVDGKQICYNYGDKEPSIM
Homology
[Close]
BLAST of Cla008014 vs. TrEMBL
Match: B0F817_CUCME (Self-incompatibility protein 1 OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.6e-24
Identity = 62/145 (42.76%), Postives = 87/145 (60.00%), Query Frame = 1 

Query: 1   MGSSPTLALSLLILFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVTVHCKSKNDDLGLH 60
           M SS  L  S+ +L   SLHA      + PETTVTIVN++  G  + +HC+SK DDLG++
Sbjct: 1   MTSSLALGFSMFLLLPISLHATDELISLLPETTVTIVNEVG-GPLLGIHCRSKQDDLGVN 60

Query: 61  VLPLAKSYSFKFRPNLLETTLFYCSFVWTGQHQIYWFNVFDHKRDAGLCTTCTWIIHEYS 120
           V+   KSYSF FRPN+  TTLFYC F W  + Q ++F ++D KRD   CT C W+++   
Sbjct: 61  VVSSDKSYSFNFRPNVWGTTLFYCVFEWV-KGQPHYFTIYDFKRDGKTCTNCRWLVYASG 120

Query: 121 MCLQNPKTVDGKQICYNYGDKEPSI 146
            CLQ+ +T      C+ +    P +
Sbjct: 121 PCLQHSET---SITCFPWNKNAPEL 140

[Close]
BLAST of Cla008014 vs. TrEMBL
Match: B0F818_CUCME (Self-incompatibility protein 2 OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.2e-24
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 1 

Query: 2   GSSPTLALSLLILFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVTVHCKSKNDDLGLHV 61
           G    L  S+ +L   SLHA      + PETTVTIVN++  G  + +HC+SK DDLG++V
Sbjct: 72  GRDIALGFSMFLLLPISLHATDELISLLPETTVTIVNEVG-GPLLGIHCRSKQDDLGVNV 131

Query: 62  LPLAKSYSFKFRPNLLETTLFYCSFVWTGQHQIYWFNVFDHKRDAGLCTTCTWIIHEYSM 121
           +   KSYSF FRPN+  TTLFYC F W  + Q ++F ++D KRD   CT C W+++    
Sbjct: 132 VSSDKSYSFNFRPNVWGTTLFYCVFEWV-KGQPHYFTIYDFKRDGKTCTNCRWLVYASGP 191

Query: 122 CLQNPKTVDGKQICYNYGDKEPSI 146
           CLQ+ +T      C+ +    P +
Sbjct: 192 CLQHSET---SITCFPWNKNAPEL 210

[Close]
BLAST of Cla008014 vs. TrEMBL
Match: V4S4P0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007065mg PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.9e-21
Identity = 54/127 (42.52%), Postives = 74/127 (58.27%), Query Frame = 1 

Query: 5   PTLALSLLI-LFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVTVHCKSKNDDLGLHVLP 64
           P L L LL+ +   S+ +  G   +PP  TV + N ++  + +TVHCKSKNDDLG   LP
Sbjct: 8   PVLLLILLLHVLLASISSTSGWSAMPPRITVIVNNDLDNRLDLTVHCKSKNDDLGERHLP 67

Query: 65  LAKSYSFKFRPNLLETTLFYCSFVWTGQHQIYWFNVFDHKRDAGLC-TTCTWIIHEYSMC 124
              S+ F FRPN    T+F+CS  W  +H+IYWF+++   RD  LC   C+W I     C
Sbjct: 68  YHNSFQFSFRPNFWGRTVFFCSMHWPPEHEIYWFDIYVTTRDRRLCKERCSWNIKPRGPC 127

Query: 125 LQNPKTV 130
           L N KT+
Sbjct: 128 LFNDKTM 134

[Close]
BLAST of Cla008014 vs. TrEMBL
Match: A0A0D2SD46_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G339900 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.4e-21
Identity = 58/137 (42.34%), Postives = 77/137 (56.20%), Query Frame = 1 

Query: 2   GSSPTLALSLLILFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVTVHCKSKNDDLGLHV 61
           GS  T  LSL++LF  S      A L  P+  V I N ++ G  +T+HCKSKNDDLG+H+
Sbjct: 3   GSPITWLLSLMLLFLAS-----EAGLFEPKVHVLIYNDLQNGTDLTIHCKSKNDDLGVHL 62

Query: 62  LPLAKSYSFKFRPNLLETTLFYCSFVWTGQHQIYWFNVFDHKRDAGLCTTCTWIIHEYSM 121
           L     Y FKFRP++L  T FYCS  W G   ++WF+++  KRD   CT C W +     
Sbjct: 63  LTYRNDYEFKFRPSILLDTWFYCSMQWNG--TMHWFDIYTSKRDT--CTFCLWNVRPEGP 122

Query: 122 CLQNPKTVDGKQICYNY 139
           CL   K    K  CY++
Sbjct: 123 CLVEYK----KVTCYSW 126

[Close]
BLAST of Cla008014 vs. TrEMBL
Match: A0A0A0LI28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G162130 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-20
Identity = 59/142 (41.55%), Postives = 81/142 (57.04%), Query Frame = 1 

Query: 1   MGSSPTLALSLLI-LFFTSLHAIQGAFLIPPETTVTIVNQI-EYGIPVTVHCKSKNDDLG 60
           M S  T  LSL I L F ++  I+G     P  TV I N + +    +T+HCKS +DDLG
Sbjct: 42  MSSFSTFGLSLFISLLFATIFTIEGKPFQSPPVTVNITNALKDVNNQLTIHCKSGDDDLG 101

Query: 61  LHVLPLAKSYSFKFRPNLLETTLFYCSFVWTGQHQIYWFNVFDHKRDAGLC--TTCTWII 120
           +H L    SY+F FRPN   +TLFYC+F WTG    ++FN++   RD   C  T C WI+
Sbjct: 102 VHQLSHLASYAFNFRPNFWGSTLFYCAFDWTGSS--HYFNIYQDLRDRAKCNDTLCLWIV 161

Query: 121 HEYSMCLQNPKTVDGKQICYNY 139
            E  +C+ + KT +   ICY +
Sbjct: 162 GEQGLCMFDYKT-NAYDICYTW 180

[Close]
BLAST of Cla008014 vs. NCBI nr
Match: gi|659133839|ref|XP_008466918.1| (PREDICTED: uncharacterized protein LOC103504276 [Cucumis melo])

HSP 1 Score: 250.4 bits (638), Expect = 2.0e-63
Identity = 116/146 (79.45%), Postives = 125/146 (85.62%), Query Frame = 1 

Query: 1   MGSSPTLALSLLILFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVTVHCKSKNDDLGLH 60
           MGSSPTLALS LI F  +L AIQG+  I P TTV IVNQIEYGIPVTVHCKSKNDDLG+H
Sbjct: 1   MGSSPTLALSFLIFFLCNLRAIQGSIFIQPVTTVVIVNQIEYGIPVTVHCKSKNDDLGVH 60

Query: 61  VLPLAKSYSFKFRPNLLETTLFYCSFVWTGQHQIYWFNVFDHKRDAGLCTTCTWIIHEYS 120
           VLPL + YSFKFRPNL+ TTLF+CSF WTGQHQIYWFN+FD KRDAG CTTC WIIHEYS
Sbjct: 61  VLPLGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYS 120

Query: 121 MCLQNPKTVDGKQICYNYGDKEPSIM 147
           MCLQ+PK   GK ICYNYGDKEPSI+
Sbjct: 121 MCLQDPKN-PGKDICYNYGDKEPSIV 145

[Close]
BLAST of Cla008014 vs. NCBI nr
Match: gi|659133879|ref|XP_008466934.1| (PREDICTED: uncharacterized protein LOC103504304 [Cucumis melo])

HSP 1 Score: 244.6 bits (623), Expect = 1.1e-61
Identity = 114/146 (78.08%), Postives = 124/146 (84.93%), Query Frame = 1 

Query: 1   MGSSPTLALSLLILFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVTVHCKSKNDDLGLH 60
           MGSSP LALSLLI F  +L AIQG+  I P TTV IVNQIEY IPVTVHCKSKNDDLG+H
Sbjct: 1   MGSSPRLALSLLIFFSCNLRAIQGSIFIQPVTTVVIVNQIEYDIPVTVHCKSKNDDLGVH 60

Query: 61  VLPLAKSYSFKFRPNLLETTLFYCSFVWTGQHQIYWFNVFDHKRDAGLCTTCTWIIHEYS 120
           VLPL + YSFKFRPNL+ TTLF+CSF WTGQHQIYWFN+FD KRDAG CTTC WIIHEYS
Sbjct: 61  VLPLGQGYSFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDAGKCTTCRWIIHEYS 120

Query: 121 MCLQNPKTVDGKQICYNYGDKEPSIM 147
           MCLQ+P+   GK ICYNYGDKEPSI+
Sbjct: 121 MCLQDPEN-PGKDICYNYGDKEPSIV 145

[Close]
BLAST of Cla008014 vs. NCBI nr
Match: gi|659094489|ref|XP_008448086.1| (PREDICTED: uncharacterized protein LOC103490374 [Cucumis melo])

HSP 1 Score: 210.3 bits (534), Expect = 2.3e-51
Identity = 95/126 (75.40%), Postives = 105/126 (83.33%), Query Frame = 1 

Query: 21  AIQGAFLIPPETTVTIVNQIEYGIPVTVHCKSKNDDLGLHVLPLAKSYSFKFRPNLLETT 80
           +I G+  I P TTV IVNQIEYGIPVT HCKSKN+DLG+HVL L + YSFKFRPNL+ TT
Sbjct: 27  SISGSIFIQPVTTVVIVNQIEYGIPVTFHCKSKNNDLGVHVLSLGQGYSFKFRPNLVGTT 86

Query: 81  LFYCSFVWTGQHQIYWFNVFDHKRDAGLCTTCTWIIHEYSMCLQNPKTVDGKQICYNYGD 140
           LF+CSF WTGQHQIYWFN+FD K D G CTTC WIIHEYSMCLQ+PK   GK ICYNYGD
Sbjct: 87  LFFCSFTWTGQHQIYWFNIFDDKGDVGKCTTCRWIIHEYSMCLQDPKN-PGKVICYNYGD 146

Query: 141 KEPSIM 147
           KEPSI+
Sbjct: 147 KEPSIV 151

[Close]
BLAST of Cla008014 vs. NCBI nr
Match: gi|659133742|ref|XP_008466882.1| (PREDICTED: uncharacterized protein LOC103504203, partial [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 4.9e-38
Identity = 73/93 (78.49%), Postives = 79/93 (84.95%), Query Frame = 1 

Query: 54  NDDLGLHVLPLAKSYSFKFRPNLLETTLFYCSFVWTGQHQIYWFNVFDHKRDAGLCTTCT 113
           NDDLG+HVLPL + Y FKFRPNL+ TTLF+CSF WTGQHQIYWFN+FD KRD G CTTC 
Sbjct: 1   NDDLGVHVLPLGQGYLFKFRPNLVGTTLFFCSFTWTGQHQIYWFNIFDDKRDTGKCTTCR 60

Query: 114 WIIHEYSMCLQNPKTVDGKQICYNYGDKEPSIM 147
           WII EYSMCLQNPK   GK ICYNYGDKEPSI+
Sbjct: 61  WIILEYSMCLQNPKN-PGKDICYNYGDKEPSIV 92

[Close]
BLAST of Cla008014 vs. NCBI nr
Match: gi|659121590|ref|XP_008460735.1| (PREDICTED: uncharacterized protein LOC103499497 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-24
Identity = 62/145 (42.76%), Postives = 87/145 (60.00%), Query Frame = 1 

Query: 1   MGSSPTLALSLLILFFTSLHAIQGAFLIPPETTVTIVNQIEYGIPVTVHCKSKNDDLGLH 60
           M SS  L  S+ +L   SLHA      + PETTVTIVN++  G  + +HC+SK DDLG++
Sbjct: 1   MTSSLALGFSMFLLLPISLHATDELISLLPETTVTIVNEVG-GPLLGIHCRSKQDDLGVN 60

Query: 61  VLPLAKSYSFKFRPNLLETTLFYCSFVWTGQHQIYWFNVFDHKRDAGLCTTCTWIIHEYS 120
           V+   KSYSF FRPN+  TTLFYC F W  + Q ++F ++D KRD   CT C W+++   
Sbjct: 61  VVSSDKSYSFNFRPNVWGTTLFYCVFEWV-KGQPHYFTIYDFKRDGKTCTNCRWLVYASG 120

Query: 121 MCLQNPKTVDGKQICYNYGDKEPSI 146
            CLQ+ +T      C+ +    P +
Sbjct: 121 PCLQHSET---SITCFPWNKNAPEL 140

The following BLAST results are available for this feature:
BLAST of Cla008014 vs. TrEMBL
Match NameE-valueIdentityDescription
B0F817_CUCME1.6e-2442.76Self-incompatibility protein 1 OS=Cucumis melo PE=4 SV=1[more]
B0F818_CUCME8.2e-2441.67Self-incompatibility protein 2 OS=Cucumis melo PE=4 SV=1[more]
V4S4P0_9ROSI4.9e-2142.52Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007065mg PE=4 SV=1[more]
A0A0D2SD46_GOSRA8.4e-2142.34Uncharacterized protein OS=Gossypium raimondii GN=B456_009G339900 PE=4 SV=1[more]
A0A0A0LI28_CUCSA1.9e-2041.55Uncharacterized protein OS=Cucumis sativus GN=Csa_2G162130 PE=4 SV=1[more]
BLAST of Cla008014 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133839|ref|XP_008466918.1|2.0e-6379.45PREDICTED: uncharacterized protein LOC103504276 [Cucumis melo][more]
gi|659133879|ref|XP_008466934.1|1.1e-6178.08PREDICTED: uncharacterized protein LOC103504304 [Cucumis melo][more]
gi|659094489|ref|XP_008448086.1|2.3e-5175.40PREDICTED: uncharacterized protein LOC103490374 [Cucumis melo][more]
gi|659133742|ref|XP_008466882.1|4.9e-3878.49PREDICTED: uncharacterized protein LOC103504203, partial [Cucumis melo][more]
gi|659121590|ref|XP_008460735.1|2.4e-2442.76PREDICTED: uncharacterized protein LOC103499497 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008014Cla008014.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 33..137
score: 6.5
NoneNo IPR availablePANTHERPTHR31232FAMILY NOT NAMEDcoord: 7..144
score: 1.5
NoneNo IPR availablePANTHERPTHR31232:SF5GENOMIC DNA, CHROMOSOME 3, TAC CLONE:K14A17-RELATEDcoord: 7..144
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla008014Cucurbita moschata (Rifu)cmowmB627
Cla008014Cucurbita pepo (Zucchini)cpewmB490
Cla008014Silver-seed gourdcarwmB0278
Cla008014Watermelon (97103) v2wmwmbB297
Cla008014Wax gourdwgowmB441
Cla008014Cucurbita maxima (Rimu)cmawmB636