Cla008009 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008009
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr8 : 6474489 .. 6475059 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACTATTCTTGAATACTTGGAACTCTGAAGTTGGATGTTTCCGTGTTATTGATTTTGTTGAGCATGTACTGACCAACTATGCATTTGCGGTGATATCTTGTAGGTGTAGTGAAATCCCAAAGGTCATTTTGGCGTCTCAAAACTATAACTGATTTCTTTTGGGCCATCATAAACGTTATCGGTGTGTTTTTTACCACATTGTTCTCGGTAAGTTGCTTATTGCCTTGAAAGAAAATGTTAGCATTCAGAACCGTCATGTTGGGAAGGAAGCTAAATTCCCATGCTTCTTTGTAGATGGAAAAATCAGAGGCATATAGAAAAGGATCCGGTTCTGGGAAGAAATGGGACGGTGGTGGCCCCGGAGGTCCTGGGTCTGGCCCCTATGGTGGTCGTCCCCGTGGTCCACCTCGTGGTCTAGACAATGTTCGAGGGATTGATCACAGTATGTTGAAAGCTGATTTTTGAACTTATTTTCTCCATGCTTTCATTTGATTTATTTACTGATATGTGATCTGAATTTGATGGCAATCAGGTTCACTACCTGCCTGTGGCTCGTGCTGTGGCTAA

mRNA sequence

ATGTTACTATTCTTGAATACTTGGAACTCTGAAGTTGGATGTTTCCGTGTTATTGATTTTGTTGAGCATGTACTGACCAACTATGCATTTGCGGTGATATCTTGTAGGTGTAGTGAAATCCCAAAGATGGAAAAATCAGAGGCATATAGAAAAGGATCCGGTTCTGGGAAGAAATGGGACGGTGGTGGCCCCGGAGGTCCTGGGTCTGGCCCCTATGGTGGTCGTCCCCGTGGTCCACCTCGTGGTCTAGACAATGTTCGAGGGATTGATCACAGTTCACTACCTGCCTGTGGCTCGTGCTGTGGCTAA

Coding sequence (CDS)

ATGTTACTATTCTTGAATACTTGGAACTCTGAAGTTGGATGTTTCCGTGTTATTGATTTTGTTGAGCATGTACTGACCAACTATGCATTTGCGGTGATATCTTGTAGGTGTAGTGAAATCCCAAAGATGGAAAAATCAGAGGCATATAGAAAAGGATCCGGTTCTGGGAAGAAATGGGACGGTGGTGGCCCCGGAGGTCCTGGGTCTGGCCCCTATGGTGGTCGTCCCCGTGGTCCACCTCGTGGTCTAGACAATGTTCGAGGGATTGATCACAGTTCACTACCTGCCTGTGGCTCGTGCTGTGGCTAA

Protein sequence

MLLFLNTWNSEVGCFRVIDFVEHVLTNYAFAVISCRCSEIPKMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG

Homology

[Close]

BLAST of Cla008009 vs. TrEMBL
Match: A0A0A0KDW6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G040550 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.3e-30
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 43  MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 102
           MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 42  MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cla008009 vs. TrEMBL
Match: M5XZ42_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013824mg PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.5e-28
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 43  MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 102
           MEKS+AYRKG  SGKKWDGGGPGGPG GPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 42  MEKSDAYRKGLASGKKWDGGGPGGPGGGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cla008009 vs. TrEMBL
Match: A5CA43_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015657 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.2e-27
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 43  MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 102
           MEKS+AYRK SGSGKKWDGGGPGGPG GPYGG PRGPPRGLDNVRGIDHS+LPACGSCCG
Sbjct: 42  MEKSDAYRKSSGSGKKWDGGGPGGPGRGPYGGGPRGPPRGLDNVRGIDHSALPACGSCCG 101

[Close]

BLAST of Cla008009 vs. TrEMBL
Match: E0CRA1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03450 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.2e-27
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 43  MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 102
           MEKS+AYRK SGSGKKWDGGGPGGPG GPYGG PRGPPRGLDNVRGIDHS+LPACGSCCG
Sbjct: 51  MEKSDAYRKSSGSGKKWDGGGPGGPGRGPYGGGPRGPPRGLDNVRGIDHSALPACGSCCG 110

[Close]

BLAST of Cla008009 vs. TrEMBL
Match: K4D6B4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.2e-27
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 43  MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 102
           MEK+++YRKGSGS KKWDGGGPGGPGSGPYGG PRGPPRG+DNVRGIDHSSLPACGSCCG
Sbjct: 4   MEKTDSYRKGSGSSKKWDGGGPGGPGSGPYGGGPRGPPRGMDNVRGIDHSSLPACGSCCG 63

[Close]

BLAST of Cla008009 vs. NCBI nr
Match: gi|449446207|ref|XP_004140863.1| (PREDICTED: selenoprotein K [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 7.6e-30
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 43  MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 102
           MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 42  MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cla008009 vs. NCBI nr
Match: gi|659089743|ref|XP_008445670.1| (PREDICTED: selenoprotein K [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 7.6e-30
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 43  MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 102
           MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 42  MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cla008009 vs. NCBI nr
Match: gi|697106574|ref|XP_009607117.1| (PREDICTED: selenoprotein K [Nicotiana tomentosiformis])

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-27
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 1


Query: 43  MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 102
           MEK++AYRKGSGS KKWDGGGPGGPGSGPYGG PRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 42  MEKTDAYRKGSGSSKKWDGGGPGGPGSGPYGGGPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cla008009 vs. NCBI nr
Match: gi|596288663|ref|XP_007225974.1| (hypothetical protein PRUPE_ppa013824mg [Prunus persica])

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-27
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 43  MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 102
           MEKS+AYRKG  SGKKWDGGGPGGPG GPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 42  MEKSDAYRKGLASGKKWDGGGPGGPGGGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of Cla008009 vs. NCBI nr
Match: gi|470109096|ref|XP_004290838.1| (PREDICTED: selenoprotein K [Fragaria vesca subsp. vesca])

HSP 1 Score: 129.4 bits (324), Expect = 3.5e-27
Identity = 55/60 (91.67%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 43  MEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 102
           MEKS+AYRKGSG+ KKWDGGGPGGPG GPYGG PRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 42  MEKSDAYRKGSGASKKWDGGGPGGPGGGPYGGGPRGPPRGLDNVRGIDHSSLPACGSCCG 101

The following BLAST results are available for this feature:

BLAST of Cla008009 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDW6_CUCSA	5.3e-30	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G040550 PE=4 SV=1	[more]
M5XZ42_PRUPE	8.5e-28	93.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013824mg PE=4 SV=1	[more]
A5CA43_VITVI	3.2e-27	91.67	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015657 PE=4 SV=1	[more]
E0CRA1_VITVI	3.2e-27	91.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03450 PE=4 SV=...	[more]
K4D6B4_SOLLC	3.2e-27	90.00	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Cla008009 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446207\|ref\|XP_004140863.1\|	7.6e-30	100.00	PREDICTED: selenoprotein K [Cucumis sativus]	[more]
gi\|659089743\|ref\|XP_008445670.1\|	7.6e-30	100.00	PREDICTED: selenoprotein K [Cucumis melo]	[more]
gi\|697106574\|ref\|XP_009607117.1\|	1.2e-27	93.33	PREDICTED: selenoprotein K [Nicotiana tomentosiformis]	[more]
gi\|596288663\|ref\|XP_007225974.1\|	1.2e-27	93.33	hypothetical protein PRUPE_ppa013824mg [Prunus persica]	[more]
gi\|470109096\|ref\|XP_004290838.1\|	3.5e-27	91.67	PREDICTED: selenoprotein K [Fragaria vesca subsp. vesca]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU19634	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU21749	watermelon EST collection version 2.0	transcribed_cluster
WMU23743	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU24166	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU25552	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU35329	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU39310	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU43983	watermelon EST collection version 2.0	transcribed_cluster
WMU52069	watermelon EST collection version 2.0	transcribed_cluster
WMU55504	watermelon EST collection version 2.0	transcribed_cluster
WMU64483	watermelon EST collection version 2.0	transcribed_cluster
WMU66356	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008009	Cla008009.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU23743	WMU23743	transcribed_cluster
WMU39310	WMU39310	transcribed_cluster
WMU25552	WMU25552	transcribed_cluster
WMU43983	WMU43983	transcribed_cluster
WMU24166	WMU24166	transcribed_cluster
WMU52069	WMU52069	transcribed_cluster
WMU35329	WMU35329	transcribed_cluster
WMU21749	WMU21749	transcribed_cluster
WMU19634	WMU19634	transcribed_cluster
WMU55504	WMU55504	transcribed_cluster
WMU66356	WMU66356	transcribed_cluster
WMU64483	WMU64483	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla008009	CsaV3_6G003570	Cucumber (Chinese Long) v3	cucwmB484

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla008009	Bottle gourd (USVL1VR-Ls)	lsiwmB468
Cla008009	Cucumber (Gy14) v2	cgybwmB431
Cla008009	Melon (DHL92) v3.6.1	medwmB304
Cla008009	Watermelon (97103) v2	wmwmbB102
Cla008009	Wax gourd	wgowmB304
Cla008009	Cucumber (Gy14) v1	cgywmB659
Cla008009	Wild cucumber (PI 183967)	cpiwmB474
Cla008009	Melon (DHL92) v3.5.1	mewmB310
Cla008009	Watermelon (Charleston Gray)	wcgwmB402
Cla008009	Cucumber (Chinese Long) v2	cuwmB459