Cla008001 (gene) Watermelon (97103) v1

NameCla008001
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionOs01g0650700 protein (Fragment) (AHRD V1 ***- Q0JKT9_ORYSJ)
LocationChr8 : 6141126 .. 6141714 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAGACTAATAAGAAGAATCAGGCAGAACTAAAATTCAATCATCGAGCAGGGCCTAAGACATTCATCAACATACAACAAGAACTCATGAGACATGTGCTTGACAGTGATTCATTATCTATATTTAATCAGTAATAAACTTTACTTTACGCGTCTTTTGGATTTTAGAGTGTGAAAGATGGTCAGTAGTGTGGACCAATTGACCTATTTAAGAAAACACACTCACGAGATGACCAGTGGGTGAACCAAGCCGCAAGTGATGCACATGTACGGTGTTTTCATTACGTAAGATATGCTCATTTAAATACGTGTTATATATTATTGCTCATTTATATTGTTTTAATTATAGACATGGATGATGGAATTAGAAGGGACGTCAACTTCAGAAGGGAGTCAACCACTTTCACAGGAAGAAATATGTGAGATGGTGTTGGGAAGACGGCCGGGACATGCTAAAGGTCTCGGTTGGGGGCCAAAACCAAAGCCAAGAAAGTATATCTCCTCATCATCGATTGAGTCTATGCAACATAGAGAGTACGAACAAGCAATTGAGATACAAAACTTGAAAGAGCAACTTCAAGAATAA

mRNA sequence

ATGGCAGAGACTAATAAGAAGAATCAGGCAGAACTAAAATTCAATCATCGAGCAGGGCCTAAGACATTCATCAACATACAACAAGAACTCATGAGACATACATGGATGATGGAATTAGAAGGGACGTCAACTTCAGAAGGGAGTCAACCACTTTCACAGGAAGAAATATGTGAGATGGTGTTGGGAAGACGGCCGGGACATGCTAAAGGTCTCGGTTGGGGGCCAAAACCAAAGCCAAGAAAGTATATCTCCTCATCATCGATTGAGTCTATGCAACATAGAGAGTACGAACAAGCAATTGAGATACAAAACTTGAAAGAGCAACTTCAAGAATAA

Coding sequence (CDS)

ATGGCAGAGACTAATAAGAAGAATCAGGCAGAACTAAAATTCAATCATCGAGCAGGGCCTAAGACATTCATCAACATACAACAAGAACTCATGAGACATACATGGATGATGGAATTAGAAGGGACGTCAACTTCAGAAGGGAGTCAACCACTTTCACAGGAAGAAATATGTGAGATGGTGTTGGGAAGACGGCCGGGACATGCTAAAGGTCTCGGTTGGGGGCCAAAACCAAAGCCAAGAAAGTATATCTCCTCATCATCGATTGAGTCTATGCAACATAGAGAGTACGAACAAGCAATTGAGATACAAAACTTGAAAGAGCAACTTCAAGAATAA

Protein sequence

MAETNKKNQAELKFNHRAGPKTFINIQQELMRHTWMMELEGTSTSEGSQPLSQEEICEMVLGRRPGHAKGLGWGPKPKPRKYISSSSIESMQHREYEQAIEIQNLKEQLQE
BLAST of Cla008001 vs. TrEMBL
Match: W5HS17_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 37/113 (32.74%), Postives = 56/113 (49.56%), Query Frame = 1

Query: 6   KKNQAELKFNHRAGPKTFINIQQELM-------------------------RHTWMMELE 65
           K N++ L + H+ G K+F+ +Q EL                          +H  M++ +
Sbjct: 94  KANRSNLPYVHKKGTKSFVAVQHELNCGDIRLYKECYSSDKKGWASEDARNKHEEMLQKQ 153

Query: 66  GTSTSEGSQPLSQEEICEMVLGRRPGHAKGLGWGPKPKPRKYISSSSIESMQH 94
                EG  PL++++ICE VLG+  G+ +G G GPKP  R Y S+SS  S QH
Sbjct: 154 KEPIEEGEVPLTEQQICEHVLGKAYGYIRGRGHGPKPNRRAYSSASS--STQH 204

BLAST of Cla008001 vs. TrEMBL
Match: T1MZV6_TRIUA (Uncharacterized protein OS=Triticum urartu PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-06
Identity = 36/108 (33.33%), Postives = 57/108 (52.78%), Query Frame = 1

Query: 6   KKNQAELKFNHRAGPKTFINIQQEL-------MRHTWMMELEGTSTS------------- 65
           K N++ L + H+ G K+F+ +Q EL        +  +  + +G ++              
Sbjct: 121 KANRSNLPYVHKKGTKSFVAVQHELNCGDIRLYKECYSSDKKGWASEDARNKHKQKEPIE 180

Query: 66  EGSQPLSQEEICEMVLGRRPGHAKGLGWGPKPKPRKYISSSSIESMQH 94
           EG  PL++++ICE VLG+  G+ +G G GPKP  R Y S+SS  S QH
Sbjct: 181 EGEVPLTEQQICEHVLGKAYGYIRGRGHGPKPNRRAYSSASS--STQH 226

BLAST of Cla008001 vs. TrEMBL
Match: A0A0D9XY75_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-06
Identity = 39/110 (35.45%), Postives = 56/110 (50.91%), Query Frame = 1

Query: 6   KKNQAELKFNHRAGPKTFINIQQELM----------------RHTWMMELEGTSTSEGSQ 65
           K N + L + H+ G K F+ +Q EL                 +H  M+E++   T E   
Sbjct: 82  KANCSMLPYVHKKGTKPFVALQHELKECYCTQDGWASTDAMEKHEKMLEMQ-QQTEEDET 141

Query: 66  PLSQEEICEMVLGRRPGHAKGLGWGPKPKPRKYISSSSIESMQHREYEQA 100
            L++++ICE VLG+  G+ +G G GPKP  R  +SSSS  S Q  E E A
Sbjct: 142 CLAEQQICERVLGKAYGYIRGRGHGPKPNRR--VSSSSTNSNQQLEQELA 188

BLAST of Cla008001 vs. TrEMBL
Match: I1NQ67_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.8e-06
Identity = 37/127 (29.13%), Postives = 60/127 (47.24%), Query Frame = 1

Query: 6   KKNQAELKFNHRAGPKTFINIQQEL------------------------MRHTWMMELEG 65
           K N+ +L + H+ G K F+ +Q EL                          +  M++++ 
Sbjct: 184 KANRMKLAYVHKKGTKPFVALQHELSCDQISLYKECYCSDKGWASRDARQNYETMLQMQH 243

Query: 66  TSTSEGSQPLSQEEICEMVLGRRPGHAKGLGWGPKPKPRKYISSSSIESMQHREYEQAIE 109
            +  EG+  L++++ICE VLG+  G+ +G G GPKP  R   SS+S  + Q  E E A  
Sbjct: 244 ENEQEGANQLTEQQICEKVLGKAYGYIRGRGHGPKPNRR--ASSTSANTYQQMEEELAST 303

BLAST of Cla008001 vs. NCBI nr
Match: gi|659071971|ref|XP_008462851.1| (PREDICTED: uncharacterized protein LOC103501125 isoform X2 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-10
Identity = 36/76 (47.37%), Postives = 53/76 (69.74%), Query Frame = 1

Query: 36  MMELEGTSTSEGSQPLSQEEICEMVLGRRPGHAKGLGWGPKPKPRKYISSSSIESMQHRE 95
           M+EL+     +GSQPL ++EIC+ VLGRRPG++KGLG GPKPK R+  S++S  +   + 
Sbjct: 1   MLELKSQPIPKGSQPLFEDEICDQVLGRRPGYSKGLGCGPKPKARRTSSANSSSTSSSQS 60

Query: 96  YEQAIEIQ-NLKEQLQ 111
            ++ IE+Q  L E L+
Sbjct: 61  NQKEIELQAKLHEALE 76

BLAST of Cla008001 vs. NCBI nr
Match: gi|659082629|ref|XP_008441946.1| (PREDICTED: GDSL esterase/lipase At1g33811-like [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1

Query: 36  MMELEGTSTSEGSQPLSQEEICE-MVLGRRPGHAKGLGWGPKPKPRKY--ISSSSIESMQ 95
           M+EL+   T EGSQPL  +EICE +VL RRP ++KGLG GP PK RK   +SSSS    Q
Sbjct: 243 MLELQPQPTPEGSQPLYGDEICETIVLSRRPSYSKGLGCGPNPKSRKMTSVSSSSTMFSQ 302

Query: 96  HREYE 98
            REYE
Sbjct: 303 AREYE 307

BLAST of Cla008001 vs. NCBI nr
Match: gi|659092969|ref|XP_008447319.1| (PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1

Query: 38  ELEGTSTSEGSQPLSQEEICEMVLGRRPGHAKGLGWGPKPKPRKYISSSS---------I 97
           ++    T EG+QPLS +EI E +L RR G++KGLGWGPKPK  K  S+SS         I
Sbjct: 7   DVHSQPTLEGNQPLSGDEIYETMLDRRSGNSKGLGWGPKPKACKMTSASSSMTSCPQSII 66

Query: 98  ESMQHREYEQAIEIQNLKEQ 109
           E     +++QA  +Q ++EQ
Sbjct: 67  ELQLQAKFDQA--MQQIEEQ 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
W5HS17_WHEAT3.1e-0732.74Uncharacterized protein OS=Triticum aestivum PE=4 SV=1[more]
T1MZV6_TRIUA2.0e-0633.33Uncharacterized protein OS=Triticum urartu PE=4 SV=1[more]
A0A0D9XY75_9ORYZ3.4e-0635.45Uncharacterized protein OS=Leersia perrieri PE=4 SV=1[more]
I1NQ67_ORYGL5.8e-0629.13Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659071971|ref|XP_008462851.1|3.3e-1047.37PREDICTED: uncharacterized protein LOC103501125 isoform X2 [Cucumis melo][more]
gi|659082629|ref|XP_008441946.1|1.4e-0858.46PREDICTED: GDSL esterase/lipase At1g33811-like [Cucumis melo][more]
gi|659092969|ref|XP_008447319.1|1.3e-0643.75PREDICTED: uncharacterized protein LOC103489789 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008001Cla008001.1mRNA