Cla007980 (gene) Watermelon (97103) v1

Overview
NameCla007980
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTransmembrane protein 165 (AHRD V1 **-- F4WJ84_ACREC); contains Interpro domain(s) IPR001727 Uncharacterised protein family UPF0016
LocationChr8 : 5570026 .. 5573695 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCTCCGTCATTCAGGTATTTCTTCTGTTTTTCTTTATTTTTCTTTCTTCCTTTCTTCCGATTTAATTTGATGTATCTTTCTTCATTTCCTTCCCTAGGGTTTTACCAAGTCGCTCGCGATGACTGTGCTATCCGAGATCGGCGATAAAACATTCTTCGCCGCTGCGGTTAGTCCATACTTGTGATCGACTTCTGTTTTTTTTTTTTTTTTCCCCCATTTAATTGCATTATTTCCATAGATTTGTTTCTAGTGTCTTCTGGTATAAGCAATGCGTTTGGTCCCGAAGTTGACTTTGGAATGGAATATGTATTATGTATTATGTATGCCGTTCCACTTCGCTTAGTGGTTCATAAAGTTTGCTTCAGAATCACGTTTTTTGTAGTTATAGGCTTATCGCTTATCGGTGTGGGTGCGCAGACTTGTTTCAGACAAATATAAGGAGGGAATTTTCTTCCTTCCCCTTTTTCCTTTTTTCAAGAATAAATTCTGTTCTTAAGGATCTTATAACACCTTCCTCAAATAAGACAAGTAAAATCCAAGTAAATTTTAGTAGTTTTGCGGTATGGATCTTCTACTCTTACTAAATGATCTTTCTTCCCCGCTTCCCCAGGAACAGAAATGTGTTCCTGTCGCTGTCTGTCTCCCCACTTTCATCAAGTTGCTTGAAATTTTCTTTGATACTGATACATTCGTTCATGTATTGGATATGGACAAAGGAGAATATGCAGTTTTTATAAATTCTTGTTTTACAAAAAAGTTCTTATAACTTTTTGACGTTTAATAACTATTAAAGAGCTACTGAAAGTAAGAGTTCACGCATCATGCCGAAGCATAACCCAATGCCATAATACTTATCTGCATCACTAAGTAATGACATTCATTGTGAAGATTGATGCATTTCAGTTAAAAAAACTGGAAGTTGTAATTACTGAAATTTATAATATGTAAAACGGAATTTTCTTATGCAATTACTGAAGTTTCATTTGCTATTGTGATGTCATAGAATCATGAATCTGGAAAAACACATTTTGTTTTATCTGTTATGTGAAAGACATAGGTGATTGGAAATCGTCATGGAGGACATTTAGCATCATATGGTTTGTTATAGAGAAGGGCCCTCGTACTTTAAGCCTTGATAAGAATAAACTGCCGAAACCTGTCCACTTCAACTAAGAAAGTCCTGTCATTTCTGCTGCAATTTTTTGATTTATTATCTATCAACTTGTTGAATTAATATTGTTTTCCTAATAGTCTTCTGGGACGATAATCAGCAATTTATCTTTCTTTCTTTTTTTCCTGCATAAATATATTAACTATTCATTTTCTCATGTTTTAATCCTCTGTTTAAAGATCATGGCAATGCGGCATCCAAGGAGACTTGTCTTGTCTGGTTGTATGTCAGCTTTGATTGTAAGTATGTCTGTCAAAAGTAAACTTTCTTTCTTCATCGCATGTGCCATCACGACTTTCCTGGTCTACGTCTATGCCTCTAACTTAGTTGTTTTGCTGTTTTTAGGTGATGACTGTTCTTTCTGTTCTGGTTGGCTGGGCTGCACCAAATTTGGTAAGAAAATTGATTGCTCAAATTCAATACCTCATACTTGCTTGTTTATTTACTTTACCTGGTAGGGCTGGGACAAGTAGTAAATTTAATCGCATTTTTTTGTGTGCATGTGTCGTAGACTTTAATTTTGCATATGCTATTTGATTGTTTGTGCTTAATATTTTGGGATGCAAGAATAGTAGACTTGCAATGTTGAAGTTCAACCAATAAATCTGCACCCATGCGCTTTGCTTTACTTTTGGTTTCCTCTTCCCATGGATCAGATTTGTGCCACTAAATGATAAAGTAAACGGACCTCTAGAGTATTTCTTTCATGGGAAATTTTAATCGATGCTTTTGTTTTTGTTTGTTTGGATTAAAGATTAATTGATTGATTGTTAATTAAGCAATCATAAGACACGTTGTAAAGAAACTATCAGGTCACTTAGATCCATATTTTCTCCTCTTTGTTGAAGGGCAGTAGTTTTAGATGAATGCAATTAGGAATCAGATCTTGATATTTTATGTTGTATTAGTAAGTTGGAGAAAAGCATTTCATCTAAATTAATTTCCTTTTTACAAACAAGAAACAACTTGAGACTTTGGAACTTGAAATGGTAAAGTGCTTCCTTGAGCTTTGATATCATCCTTTGTAATTTAGTTACTATCCTTATTGTTAGGCCAAATTGCTTGCCTTGAGCAAGCAATCACTTTTGGTTCCTTGCTGGTCATTTTCTTCCCCAGTTATTATTCTTTGCATTGTGATGTACTCTACTTTATGCAGATCTCACGTAAGTGGGCACATCATGTCACAACTCTTTTGTTCCTTGTTTTTGGGCTGTGGTCTTTATGGGATGCATTTAATGATGAAGGGTAATGATTCCTTGTTATCTTGTACTTTTCTTCTAATTAGTAATTTAATTTTCTATGTGCACGCAAGTAACCAAATGAATGGCTTATCCGACATTTTTTTTGTTATATTTTATTGGCAGGGAGTCTGAAGAATTGGCTGAAGTTGAAGCTAAATTGGTTAGGGTTTTATTTTTAAGTCCCTTTTGCAGTGCACATGCTCAGGTGGGATTCTATTTTTAACTCAGCTGTGTCTTGTGCCTAGGATGCTGATTTGAAGGCTAACAAAAAAGGTTCCAAAGACGGAAATAAGGTATGTTGTACTATCAGAAAGAGATTATACATCTTCTTACCCCTAATAAAACTGTCTCCCAATCTAGCCATTTCAAAAAGTCTGCTGAGTCCAATTGTGTTTATGAAAAGAATTCAAGAAAGTCTACTTAACAATTCTTGGATTTGGGAGGGCTTCTAGATGTATGATGTTAGCCTGCTTTTTTGAGAATTAATTTTTCTTATAAATTCTTTATTCATTTGATGATGCATGTCCTTTGCTTTCACGGGCTTTCTCCCTTTCTTCCTAGCCTTGCTCTGTGTCTGAATTATTATAGCATTTTATGTTTTGATTTCAAATGAACATGTACAAACTAATTTAAGACAATTGAGAGTTTAGAATCCCATTTGCAGATCATTGATATATTTATTCCGTAAAAAATCTCATCCTCTCTCAAAATTGATGAGTATTATTCTCATCTTGTTACGGGATAGAACTGGTTGAAGTCCTTGTTACAGAAGTAAGGAGAAGCTGTAATATTTCTATTTTCCTTTATGGATTGGCGTGTTGAAAGTGCAGATATGTAAGATACTTACATGGTAACTTGGAATCATCAAGCTTAACCCTTATGACAGGTTGATGATGATGTGAAGAAGCACAATCGCTCAATTCTCTTGCAGTTCTTGTCACCAATATATTTGAAGGTTATATTTTTGTAACCTATATTCAGCTAAATGTAAATGTTAAGTAGTGAGATTAATTAACTCACGAACTTTCTCCTTGAGTTTCTGCAGGCATTTTCCATTACCTTTTTCGGTGAATGGGGTGACAAGAGTCAGGTTAGTATGAAAGTTGAGAATGACCATTTCTATTTAACTTAATAAGTTATTTCACTCTTGCAGTACTGATGTTTGAATTTGATTGCCTTTGTCAGCTAGCGACGATTGGTTTAGCTGCAGATGAAGACCCACTAGGTGTCGTTCTTGGAGGAATTTTGTAA

mRNA sequence

ATGGCCACCTCCGTCATTCAGGGTTTTACCAAGTCGCTCGCGATGACTGTGCTATCCGAGATCGGCGATAAAACATTCTTCGCCGCTGCGGTTGATGATGATGTGAAGAAGCACAATCGCTCAATTCTCTTGCAGTTCTTGTCACCAATATATTTGAAGGCATTTTCCATTACCTTTTTCGGTGAATGGGGTGACAAGAGTCAGCTAGCGACGATTGGTTTAGCTGCAGATGAAGACCCACTAGGTGTCGTTCTTGGAGGAATTTTGTAA

Coding sequence (CDS)

ATGGCCACCTCCGTCATTCAGGGTTTTACCAAGTCGCTCGCGATGACTGTGCTATCCGAGATCGGCGATAAAACATTCTTCGCCGCTGCGGTTGATGATGATGTGAAGAAGCACAATCGCTCAATTCTCTTGCAGTTCTTGTCACCAATATATTTGAAGGCATTTTCCATTACCTTTTTCGGTGAATGGGGTGACAAGAGTCAGCTAGCGACGATTGGTTTAGCTGCAGATGAAGACCCACTAGGTGTCGTTCTTGGAGGAATTTTGTAA

Protein sequence

MATSVIQGFTKSLAMTVLSEIGDKTFFAAAVDDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGGIL
Homology
[Close]
BLAST of Cla007980 vs. Swiss-Prot
Match: GDT15_ORYSJ (GDT1-like protein 5 OS=Oryza sativa subsp. japonica GN=Os08g0433100 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-19
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1 

Query: 32  DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGGIL 90
           +DD KK  R  +LQF SPI++KAFSITFFGEWGDKSQ+ATIGLAADE+P GVVLGG+L
Sbjct: 126 NDDKKKQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLGGVL 183


HSP 2 Score: 53.5 bits (127), Expect = 1.4e-06
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 1 

Query: 1  MATSVIQGFTKSLAMTVLSEIGDKTFFAAAV 32
          MA S++ GFTKSLAMTVLSEIGDKTFFAAA+
Sbjct: 1  MAPSLLGGFTKSLAMTVLSEIGDKTFFAAAI 31

[Close]
BLAST of Cla007980 vs. Swiss-Prot
Match: GDT14_ARATH (GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-19
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1 

Query: 32  DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGGIL 90
           +D+ KK NR+ L QF SPI+LKAFSI FFGEWGDKSQLATIGLAADE+P GVVLGG++
Sbjct: 126 EDENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLGGVV 183


HSP 2 Score: 51.6 bits (122), Expect = 5.1e-06
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 1 

Query: 3  TSVIQGFTKSLAMTVLSEIGDKTFFAAAV 32
          +SV+QGFTKSLAMT +SEIGDKTFFAAA+
Sbjct: 2  SSVLQGFTKSLAMTFVSEIGDKTFFAAAI 30

[Close]
BLAST of Cla007980 vs. Swiss-Prot
Match: GDT15_ARATH (GDT1-like protein 5 OS=Arabidopsis thaliana GN=At1g68650 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-18
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 1 

Query: 31  VDDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGGIL 90
           ++D+ KK  R  L  F SPI+LKAFSI FFGEWGDKSQLATIGLAADE+PLGVVLGGI+
Sbjct: 123 IEDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGGIV 181


HSP 2 Score: 51.2 bits (121), Expect = 6.7e-06
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 1 

Query: 4  SVIQGFTKSLAMTVLSEIGDKTFFAAAV 32
          S++QGFTKSLAMT LSEIGDKTFFAAA+
Sbjct: 3  SLLQGFTKSLAMTFLSEIGDKTFFAAAI 30

[Close]
BLAST of Cla007980 vs. Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-09
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 1 

Query: 44  LQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGG 88
           L F+SPI+++A ++TF  EWGD+SQL TI LAA EDP GV +GG
Sbjct: 229 LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGG 272


HSP 2 Score: 32.3 bits (72), Expect = 3.2e+00
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 1 

Query: 6   IQGFTKSLAMTVLSEIGDKTFFAAAV 32
           I  F  ++++ ++SE+GDKTFF AA+
Sbjct: 94  IHAFVAAISVIIVSELGDKTFFIAAI 119

[Close]
BLAST of Cla007980 vs. Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-09
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 1 

Query: 44  LQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGG 88
           L F+SPI+++A ++TF  EWGD+SQL TI LAA EDP GV +GG
Sbjct: 229 LHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGG 272


HSP 2 Score: 32.3 bits (72), Expect = 3.2e+00
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 1 

Query: 6   IQGFTKSLAMTVLSEIGDKTFFAAAV 32
           I  F  ++++ ++SE+GDKTFF AA+
Sbjct: 94  IHAFVAAISVIIVSELGDKTFFIAAI 119

[Close]
BLAST of Cla007980 vs. TrEMBL
Match: M8CL00_AEGTA (Transmembrane protein 165 OS=Aegilops tauschii GN=F775_31813 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.4e-25
Identity = 65/121 (53.72%), Postives = 78/121 (64.46%), Query Frame = 1 

Query: 1   MATSVIQGFTKSLAMTVLSEIGDKTFFAAAV----------------------------- 60
           M+ S++ G TKSLAMTVLSE+GDKTFFAAAV                             
Sbjct: 1   MSPSLLGGLTKSLAMTVLSEVGDKTFFAAAVMTALSASLGWAAPNLDADFKSNKGESKNK 60

Query: 61  ---DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGGI 90
               +D KK  R  L+QF SPI++KAFSITFFGEWGDKSQ+ATIGLAADE+P GVV+GG+
Sbjct: 61  SKATEDTKKKQRPFLMQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGGV 120

[Close]
BLAST of Cla007980 vs. TrEMBL
Match: A0A0A0K858_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G031450 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 32  DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGGIL 90
           DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADE+PLGVVLGGIL
Sbjct: 126 DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADENPLGVVLGGIL 183

[Close]
BLAST of Cla007980 vs. TrEMBL
Match: A0A0A0K858_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G031450 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 7.2e-07
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 1  MATSVIQGFTKSLAMTVLSEIGDKTFFAAAVDDDVKKHNRSILL 45
          MATSVIQGFTKSLAMTVLSEIGDKTFFAAA+     +H R ++L
Sbjct: 1  MATSVIQGFTKSLAMTVLSEIGDKTFFAAAI--MAMRHPRRLVL 42


HSP 2 Score: 105.9 bits (263), Expect = 2.6e-20
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1 

Query: 32  DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGGIL 90
           DDD+KK  RS LLQF SPI+LKAFSITFFGEWGDKSQLATIGLAADE+PLGVVLGGIL
Sbjct: 125 DDDLKKQKRSFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPLGVVLGGIL 182

[Close]
BLAST of Cla007980 vs. TrEMBL
Match: M5XGN1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010936mg PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.8e-05
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 1 

Query: 3  TSVIQGFTKSLAMTVLSEIGDKTFFAAAVDDDVKKHNRSILL 45
          ++V+QGFTKSLAMTVLSEIGDKTFFAAA+     +H R ++L
Sbjct: 2  STVVQGFTKSLAMTVLSEIGDKTFFAAAI--LAMRHPRRLVL 41


HSP 2 Score: 105.5 bits (262), Expect = 3.3e-20
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 1 

Query: 24 KTFFAAAVDDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGV 83
          K FF+   DD++KK  R  LLQF SPI+LKAFSITFFGEWGDKSQLATIGLAADE+P GV
Sbjct: 34 KCFFSFQADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGV 93

Query: 84 VLGGIL 90
          VLGGI+
Sbjct: 94 VLGGII 99

[Close]
BLAST of Cla007980 vs. TrEMBL
Match: A0A0K9P3Q7_ZOSMR (GDT1-like protein 5 OS=Zostera marina GN=ZOSMA_3G01430 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-19
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 1 

Query: 4   SVIQGFTKSLAMTVLSEI-----------GDKTFFAAAVDDDVKKHNRSILLQFLSPIYL 63
           S+ +GFT  +    L+E+            D     + VDDD+KK NR  L QFLSPI++
Sbjct: 87  SLWEGFTAKVDTEDLAEVEAKLNADWSSEADGAKKNSKVDDDLKKQNRPFLTQFLSPIFI 146

Query: 64  KAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGGIL 90
           KAFSITFFGEWGDKSQ+ATIGLAAD++P GVVLGGIL
Sbjct: 147 KAFSITFFGEWGDKSQIATIGLAADQNPFGVVLGGIL 183

[Close]
BLAST of Cla007980 vs. NCBI nr
Match: gi|475598931|gb|EMT24096.1| (Transmembrane protein 165 [Aegilops tauschii])

HSP 1 Score: 122.1 bits (305), Expect = 4.9e-25
Identity = 65/121 (53.72%), Postives = 78/121 (64.46%), Query Frame = 1 

Query: 1   MATSVIQGFTKSLAMTVLSEIGDKTFFAAAV----------------------------- 60
           M+ S++ G TKSLAMTVLSE+GDKTFFAAAV                             
Sbjct: 1   MSPSLLGGLTKSLAMTVLSEVGDKTFFAAAVMTALSASLGWAAPNLDADFKSNKGESKNK 60

Query: 61  ---DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGGI 90
               +D KK  R  L+QF SPI++KAFSITFFGEWGDKSQ+ATIGLAADE+P GVV+GG+
Sbjct: 61  SKATEDTKKKQRPFLMQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVIGGV 120

[Close]
BLAST of Cla007980 vs. NCBI nr
Match: gi|659089684|ref|XP_008445643.1| (PREDICTED: GDT1-like protein 4 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-23
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 32  DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGGIL 90
           DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADE+PLGVVLGGIL
Sbjct: 126 DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADENPLGVVLGGIL 183

[Close]
BLAST of Cla007980 vs. NCBI nr
Match: gi|659089684|ref|XP_008445643.1| (PREDICTED: GDT1-like protein 4 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-06
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 1  MATSVIQGFTKSLAMTVLSEIGDKTFFAAAVDDDVKKHNRSILL 45
          MA+SVIQGFTKSLAMTVLSEIGDKTFFAAA+     +H R ++L
Sbjct: 1  MASSVIQGFTKSLAMTVLSEIGDKTFFAAAI--MAMRHPRRLVL 42


HSP 2 Score: 117.1 bits (292), Expect = 1.6e-23
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 32  DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGGIL 90
           DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADE+PLGVVLGGIL
Sbjct: 126 DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADENPLGVVLGGIL 183

[Close]
BLAST of Cla007980 vs. NCBI nr
Match: gi|449465635|ref|XP_004150533.1| (PREDICTED: GDT1-like protein 4 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 

Query: 1  MATSVIQGFTKSLAMTVLSEIGDKTFFAAAVDDDVKKHNRSILL 45
          MATSVIQGFTKSLAMTVLSEIGDKTFFAAA+     +H R ++L
Sbjct: 1  MATSVIQGFTKSLAMTVLSEIGDKTFFAAAI--MAMRHPRRLVL 42


HSP 2 Score: 114.4 bits (285), Expect = 1.0e-22
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 1 

Query: 15 MTVLSEIGDKTFF-AAAVDDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIG 74
          MT LSEIGDKTFF AAA++D+ KK  R  L+ F SPI+LKAFSI FFG+WGDKSQLA IG
Sbjct: 1  MTFLSEIGDKTFFVAAAIEDEQKKQKRPFLIAFFSPIFLKAFSINFFGKWGDKSQLANIG 60

Query: 75 LAADEDPLGVVLGGIL 90
          LAADE+P+GVVLGGIL
Sbjct: 61 LAADENPVGVVLGGIL 76

[Close]
BLAST of Cla007980 vs. NCBI nr
Match: gi|645276228|ref|XP_008243189.1| (PREDICTED: GDT1-like protein 4 [Prunus mume])

HSP 1 Score: 105.9 bits (263), Expect = 3.7e-20
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1 

Query: 32  DDDVKKHNRSILLQFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGGIL 90
           DDD+KK  RS LLQF SPI+LKAFSITFFGEWGDKSQLATIGLAADE+PLGVVLGGIL
Sbjct: 125 DDDLKKQKRSFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPLGVVLGGIL 182

The following BLAST results are available for this feature:
BLAST of Cla007980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GDT15_ORYSJ1.8e-1975.86GDT1-like protein 5 OS=Oryza sativa subsp. japonica GN=Os08g0433100 PE=2 SV=1[more]
GDT14_ARATH3.1e-1975.86GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1[more]
GDT15_ARATH1.2e-1874.58GDT1-like protein 5 OS=Arabidopsis thaliana GN=At1g68650 PE=1 SV=1[more]
TM165_RAT3.8e-0961.36Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1[more]
TM165_MOUSE3.8e-0961.36Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=1 SV=2[more]
BLAST of Cla007980 vs. TrEMBL
Match NameE-valueIdentityDescription
M8CL00_AEGTA3.4e-2553.72Transmembrane protein 165 OS=Aegilops tauschii GN=F775_31813 PE=4 SV=1[more]
A0A0A0K858_CUCSA1.1e-2398.28Uncharacterized protein OS=Cucumis sativus GN=Csa_6G031450 PE=4 SV=1[more]
A0A0A0K858_CUCSA7.2e-0775.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G031450 PE=4 SV=1[more]
M5XGN1_PRUPE8.8e-0566.67Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010936mg PE=4 SV=1[more]
A0A0K9P3Q7_ZOSMR1.3e-1956.70GDT1-like protein 5 OS=Zostera marina GN=ZOSMA_3G01430 PE=4 SV=1[more]
BLAST of Cla007980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|475598931|gb|EMT24096.1|4.9e-2553.72Transmembrane protein 165 [Aegilops tauschii][more]
gi|659089684|ref|XP_008445643.1|1.6e-2398.28PREDICTED: GDT1-like protein 4 [Cucumis melo][more]
gi|659089684|ref|XP_008445643.1|3.0e-0672.73PREDICTED: GDT1-like protein 4 [Cucumis melo][more]
gi|449465635|ref|XP_004150533.1|1.0e-0675.00PREDICTED: GDT1-like protein 4 [Cucumis sativus][more]
gi|645276228|ref|XP_008243189.1|3.7e-2087.93PREDICTED: GDT1-like protein 4 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001727Gdt1
Vocabulary: Biological Process
TermDefinition
GO:0032472Golgi calcium ion transport
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032472 Golgi calcium ion transport
biological_process GO:0008150 biological_process
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU36005watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU41198watermelon EST collection version 2.0transcribed_cluster
WMU55640watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007980Cla007980.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU36005WMU36005transcribed_cluster
WMU41198WMU41198transcribed_cluster
WMU55640WMU55640transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001727Gdt1 familyPANTHERPTHR12608TRANSMEMBRANE PROTEIN HTP-1 RELATEDcoord: 30..89
score: 9.5
IPR001727Gdt1 familyPFAMPF01169UPF0016coord: 11..31
score: 1.9E-4coord: 53..88
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla007980Cla97C08G147970Watermelon (97103) v2wmwmbB102
Cla007980Csa6G031450Cucumber (Chinese Long) v2cuwmB459
Cla007980MELO3C011548Melon (DHL92) v3.5.1mewmB310
Cla007980ClCG08G005110Watermelon (Charleston Gray)wcgwmB402
Cla007980CSPI06G03080Wild cucumber (PI 183967)cpiwmB474
Cla007980Cucsa.365430Cucumber (Gy14) v1cgywmB659
Cla007980CmaCh15G009090Cucurbita maxima (Rimu)cmawmB262
Cla007980CmaCh04G020610Cucurbita maxima (Rimu)cmawmB669
Cla007980CmoCh15G009470Cucurbita moschata (Rifu)cmowmB252
Cla007980CmoCh04G021580Cucurbita moschata (Rifu)cmowmB664
Cla007980Lsi08G003940Bottle gourd (USVL1VR-Ls)lsiwmB468
Cla007980Cp4.1LG13g06750Cucurbita pepo (Zucchini)cpewmB172
Cla007980Cp4.1LG01g17950Cucurbita pepo (Zucchini)cpewmB398
Cla007980CsGy6G003150Cucumber (Gy14) v2cgybwmB431
Cla007980MELO3C011548.2Melon (DHL92) v3.6.1medwmB304
Cla007980Carg27342Silver-seed gourdcarwmB0481
Cla007980Carg26878Silver-seed gourdcarwmB0952
Cla007980CsaV3_6G003330Cucumber (Chinese Long) v3cucwmB484
Cla007980Bhi04G001578Wax gourdwgowmB318
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla007980Cucumber (Gy14) v2cgybwmB350
Cla007980Melon (DHL92) v3.6.1medwmB050
Cla007980Cucumber (Chinese Long) v3cucwmB400
Cla007980Watermelon (97103) v2wmwmbB097
Cla007980Wax gourdwgowmB541
Cla007980Watermelon (97103) v1wmwmB064
Cla007980Cucumber (Gy14) v1cgywmB522
Cla007980Wild cucumber (PI 183967)cpiwmB383
Cla007980Melon (DHL92) v3.5.1mewmB049
Cla007980Watermelon (Charleston Gray)wcgwmB279
Cla007980Cucumber (Chinese Long) v2cuwmB377