Cla007978 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007978
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Conserved oligomeric Golgi complex subunit 3 (AHRD V1 **-- COG3_HUMAN); contains Interpro domain(s) IPR007265 Sec34-like protein
Location	Chr8 : 5478346 .. 5482693 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCAAGGCCGCCCCTCTTGGTTTACCAAAGTCCGGTGCAATTTCCAAGGGCTACAATTTTGCTTCTACCTGGGAACAGGTACGTTCATCTTTTCCAGTTTACTCCTCAATTCTTTCCCTTTTCCATTTTGAATCCTGAATTTTGCTTCTATCTGTTCGATCTCGCTTTCGATGTGTCTTAATGCGATGAGATCTGCCTGCGCCACTTCTTCGTTCTCTTTTCCTTCATAGATGCTTACATATTGTTTCGTTTTCTGTATTTTCGTCATCTGCTAATCCATTTTATGTCCAGAATGCTCCTCTAACGGAGCAACAGCAAGCGGCTATTGCGACACTCTGTCATGCCGTTGCTGAGCGACCATTTCCTGTTGATTTGGTGAGATTTCTGTTCTCCTCTTGATTAATTTTCAACTTGTTTCTTCTTCGTGTTCTCTAATTCTTCATTTGAAATCAACTGGTGCTGACTGCCACTTTGTACGTTTGTTTTAGAGACGAAATGAGATCTATGTTCTCACCTGAGTAACTACAGCTTCGTGTTAAATATTATTTTAGGCACAAGACAGGATAGGAGGTAAAGAAAATGCCTTGTCTATTTCGGTTAAGGATACCACCAACGAAGATTCTGATGCTATTGAAGCCGTTTTGGTCAACACCAATCAGGTAGCCTATACTGTACTGCATTCAATGTCTTCTAATAATTAATTTTTATTTCAGTATTTGTGATGGTAACAATCTCTTCAAGATGCTAACTCTGACAGACTAACTTTTGGTACATGGGCATTGCCTTGTCTCCTTCCCCTTCAGAATGTCTAAAATTCTTTCATGAATGTTGGAGACCTCTCTAGGGGCCCGGGTAGAGAACCCCACCCCCCAACAAACACCTAATACAGAAATGCATTCCAATGAAGATTTAACCAATTAAAAAAGTGTGGTTTCGTTTACACATTTCACTATTATCAACACAATCCTTGTTTCTTATTTATTTATTTATTCTTTAAAATGGATAGCAATCTCAGACTTTATATTTAATAGTTTTCAAGGTATATATACCGATCGATTATGACTTAATTTGTTGATGTCCTGCCTTGGTATCTTCTTTGGTATAATCTATTTTCACTTTATGATTGTCCGGTTTTGTTGAAGTCATATCACTGAAATTTTTGCCCTTCCTAATGAATTTTATGCAGTTCTACAAATGGTTTTCTGATCTTGAATCAGCCATGAAATCTGAGGTTAGTAAAATTGGGTTGCTTCTCTGATTTTTCTTGCATTGTGAGCTGACAATGTTCTCTTTGAGCATTCTATTCCTTATTGTAGACAGAGGAGAAATACCACCACTACTTGAATTCTTTAACAGATCGCATAAGAACATGTGATGTTATACTTCGTCAGGTAACATGTTATTACTTTTTCCTTAATCAATCAATGTGCAAGAATTGTTTGATTGGACAAAGAACCGACCAAATATCTTAACCATAAAACCCTCATAAAGCCCTTTGAGATGAACATGTACCTTTGCTGACCCAACCATAAAAACAGCACATGGCCCTCTTCTCACATTGCTGTATAATTTGCCATGCCACAAATGAGACTTCAAGTCACCTTTTCATTGATTGCCTTATTGCAGAAAGATTTTGGAAGGAGCTATCCCTCTCCTTCTGATGGTCCATTGCTCTCCCCAATGAGCTTATGAGCCTCCTCACTTACACTCTTATGGCCCACCCTTTCAATCACAAAAAGAGGATTATGTGGAGGCATATGAATCGAGCTTTATTATGGGTTTCATGGAAGGAGAGAAACAACTGAAGGAAGCTCTTTGACAAATTTTTTGAACATACAATCTATCTTGCTATGTCTTGGTGCAAGTGTACATCTTTCTATAGTTCTTAAAACCTTATATCTCTTTTGACCAATTGGAGAAGTCTCTTGTAACTCCTTCGGCTTGAGCTTGTGACCTATTTCTTATATAAAAAAACAAATTATCCACTAAGAAAGTAAGAACTTCAGTTACCAAAAGAAAAAGAAAAGGGGAAAGTAGATCCCCTTGCCTAATTCCTTTAGAAGCCACAATTCTCCCACGAGGTTGTCCATTGATGAAAACAGAGAATTTGGAATTCTGAATGCTACAAATCCATTTAATTCACTGTGAAGCAAAACCTTTTGCCTTCATAATCTACTAAAGCAAAATCTTTTGCCTTCTTTTTCAATATCGAGTTTGATAATCCAACCCCTTTTTCCATAGAAGTTCTGTACTCTTCCACTAATTTATTAGCAATTAGAATAGGTTCGGTAATTTGCCTTCCCTCTATGAAAGCACTTTGAATGTTAATTCTTTTGTGGATAACCTACTAGACAAAAAATTAAACCTTCTTGGTAATTTCCACTTTCCATGAAGAGACAAATAGGGAGCCACTAAAGGGAGAGAAAGCATGATAGTGTTTGGTTATTTTAGTCAGATGATTAGTATGGTCGAATTGTGCTAATGCAATCATTATCCCAAATTTTTTTCGCTTCCTACTAGGAAGATGCTGAAAGCTAAGGATGAAATGAGTAAAATTTTATATTTGTTGTTAACATGTTAAAATCTTTTAATTTGTGGAAGAGTAATGAAAAATAATGTATGAGACTTAATAATTACAGTTCAATTTATTCTTTTTGAATTTTGAATAACTTTTTTTTCCCCTCATGATAATGAATAGGTTCAATGAAATAATGGTAGTTCCAACTTGTGCTTTATTTCTCATTCAGGTCGATGATACACTGGACCTATTTAACGAACTTCAATTGCAACATCAGGCTGTGGCAACAAAGACTAGAACACTTCATGATGCATGTGATAGACTGGTGTGAATTTGATGTACTAATGTTCAATTGCCTAAACTTATTTGCCACTATATTTTAGCATTATGTTTCTAGAGCTTAGAACAAAAGGTTGATGAAGTAGTTGGCTTTTATTTCAATTTTTTTTTTATTATTTTTTTTTAATTTGATAAAAAAGGGGAGGAAGAATGACTTCGTGTAGATTCGTCCTATCAAGTATTTCGTTATACGATATGTCCCTTTTTCTTATGCCATCCTCAGTTAGTTTGGAGCGTGATTATTTATTATGAAACTTTTTCTGGGAAGGAAAGGGTGGTAGCAACACACACACACATACACACATATATAATGAGAAACAATAATTGAATTTCATTGATTGTTTGAAATTACAAAAGGGCAATGGATGCCATGATGATTATAGAATGCAATTCTCTTGTGAACTAAGAGATGTAAGACTATAATCACAAAAGAAAGGGTCAAAAAAGGAAGGAAAATCCGAAGCTCTATCCTTGAACATGCGATTGTTACGCTCAAGCCATAAATTGCAGAAGTAAGCTTTGTTGAATAAATTCCATAATACTTCATTGTCTTTCTTGAAAGGATGACCGATGAGAAGTATCTAGAGAAGGGGAATCATATATGAGTTTTACTTTTACTCTATCCTCCTCAGTCCTCACATTGTTATTTGATGGCAGTGTGCCGTGCATTCAAAAGTTAAGGTTCGAGCAACAACTAATAGACTGGGGGCAAACAACTTTTATTCTATCCTTCTTCAATCATATTTCGGCGGATTCAGATTTCAATTCTCATTTGTCTAAGTTTAGCGCAAAAGTTATGGGAGCCAAAAGTTGTAACATCAATAATCACTTCTTTTGTATTTGGAAAGAGGGAAATGGTTTCTTTGTGGAAGATTTAAGCAAAAGTCAGAAAGTGTTCTTCTCAGTATCTATGGCAAATTGGCTAGAAGTTGGTTTTATTCAATGACTAAAAGATCCGATTCTAGTCTTCTTTTCAAGAAAAGAAAGAGTCAAAGGAGTAATTTGCCTGTCTAAATTTCATTCTCAAGGATGTTGGTTTGTTGAGTGTGCGGTTTGGCCTTCGACGGGAGGAAGAAGGAATATTCATGTTCCATCAGGTGGTGATAAGGTGGGATGGCAAAAGTTCAAAGAAATGGTCAGCAACTGCATCAAAGAAATGGTCAGCAACTGCATCAAAGAAATGGTCAGCAACTGCATCAAAGAAATGGACAGAAATTGCATCCTGCCTCTTCTGTTTATCAGCCCGTTCAATGCCATGGCTTGCAGGGTAATATGGTTGACTCACCACATTTGAATAGAAAAAAGAGAGTTTTTGGTTCTTCAAGATCTTATGCTGAAGTGGCTCGGTCCTTCCCACTTGTTCAGAAGTTTGAAAGCTATATCAAGGTTGTAGTAGAGAAATCCTTCTGGGTTAGAAAAGAAAGAGAAATATTGGAGCTGAATCTGGAATCAAGTATGTTTGTTTTGAAACTGATGGCTCATTAA

mRNA sequence

ATGGCTGCCAAGGCCGCCCCTCTTGGTTTACCAAAGTCCGGTGCAATTTCCAAGGGCTACAATTTTGCTTCTACCTGGGAACAGAATGCTCCTCTAACGGAGCAACAGCAAGCGGCTATTGCGACACTCTGTCATGCCGTTGCTGAGCGACCATTTCCTGTTGATTTGGCACAAGACAGGATAGGAGGTAAAGAAAATGCCTTGTCTATTTCGGTTAAGGATACCACCAACGAAGATTCTGATGCTATTGAAGCCGTTTTGGTCAACACCAATCAGTTCTACAAATGGTTTTCTGATCTTGAATCAGCCATGAAATCTGAGACAGAGGAGAAATACCACCACTACTTGAATTCTTTAACAGATCGCATAAGAACATGTGATGTTATACTTCGTCAGGTCGATGATACACTGGACCTATTTAACGAACTTCAATTGCAACATCAGGCTGTGGCAACAAAGACTAGAACACTTCATGATGCATGTGATAGACTGGGTAATATGGTTGACTCACCACATTTGAATAGAAAAAAGAGAGTTTTTGGTTCTTCAAGATCTTATGCTGAAGTGGCTCGGTCCTTCCCACTTGTTCAGAAGTTTGAAAGCTATATCAAGGTTGTAGTAGAGAAATCCTTCTGGGTTAGAAAAGAAAGAGAAATATTGGAGCTGAATCTGGAATCAAGTATGTTTGTTTTGAAACTGATGGCTCATTAA

Coding sequence (CDS)

ATGGCTGCCAAGGCCGCCCCTCTTGGTTTACCAAAGTCCGGTGCAATTTCCAAGGGCTACAATTTTGCTTCTACCTGGGAACAGAATGCTCCTCTAACGGAGCAACAGCAAGCGGCTATTGCGACACTCTGTCATGCCGTTGCTGAGCGACCATTTCCTGTTGATTTGGCACAAGACAGGATAGGAGGTAAAGAAAATGCCTTGTCTATTTCGGTTAAGGATACCACCAACGAAGATTCTGATGCTATTGAAGCCGTTTTGGTCAACACCAATCAGTTCTACAAATGGTTTTCTGATCTTGAATCAGCCATGAAATCTGAGACAGAGGAGAAATACCACCACTACTTGAATTCTTTAACAGATCGCATAAGAACATGTGATGTTATACTTCGTCAGGTCGATGATACACTGGACCTATTTAACGAACTTCAATTGCAACATCAGGCTGTGGCAACAAAGACTAGAACACTTCATGATGCATGTGATAGACTGGGTAATATGGTTGACTCACCACATTTGAATAGAAAAAAGAGAGTTTTTGGTTCTTCAAGATCTTATGCTGAAGTGGCTCGGTCCTTCCCACTTGTTCAGAAGTTTGAAAGCTATATCAAGGTTGTAGTAGAGAAATCCTTCTGGGTTAGAAAAGAAAGAGAAATATTGGAGCTGAATCTGGAATCAAGTATGTTTGTTTTGAAACTGATGGCTCATTAA

Protein sequence

MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDRIGGKENALSISVKDTTNEDSDAIEAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLTDRIRTCDVILRQVDDTLDLFNELQLQHQAVATKTRTLHDACDRLGNMVDSPHLNRKKRVFGSSRSYAEVARSFPLVQKFESYIKVVVEKSFWVRKEREILELNLESSMFVLKLMAH

Homology

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BLAST of Cla007978 vs. Swiss-Prot
Match: COG3_HUMAN (Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3 PE=1 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-12
Identity = 51/178 (28.65%), Postives = 80/178 (44.94%), Query Frame = 1


Query: 3   AKAAPLGLPKSGAISKGYNFASTWEQN----APLTEQQQAAIATLCHAVAERPFPVDLA- 62
           A+AA L LP++ A        + W++     APLT++Q  ++  L  A    P P +L  
Sbjct: 2   AEAALLLLPEAAAERDAREKLALWDRRPDTTAPLTDRQTDSVLELKAAAENLPVPAELPI 61

Query: 63  QDRIGGKENALSISVKDTTNEDSDAI-----------EAVLVNTNQFYKWFSDLESAMKS 122
           +D       +L I +     E ++ I           E  +    QF+ WF+ L++ M  
Sbjct: 62  EDLCSLTSQSLPIELTSVVPESTEDILLKGFTSLGMEEERIETAQQFFSWFAKLQTQMDQ 121

Query: 123 ETEEKYHHYLNSLTDRIRTCDVILRQVDDTLDLFNELQLQHQAVATKTRTLHDACDRL 165
           +   KY    + L+     CD IL  V+  L     LQ Q+  V+ KT TLH+AC++L
Sbjct: 122 DEGTKYRQMRDYLSGFQEQCDAILNDVNSALQHLESLQKQYLFVSNKTGTLHEACEQL 179

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BLAST of Cla007978 vs. Swiss-Prot
Match: COG3_MOUSE (Conserved oligomeric Golgi complex subunit 3 OS=Mus musculus GN=Cog3 PE=1 SV=3)

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-10
Identity = 51/196 (26.02%), Postives = 84/196 (42.86%), Query Frame = 1


Query: 30  APLTEQQQAAIATLCHAVAERPFPVDLA-QDRIGGKENALSISVKDTTNEDSDAI----- 89
           APLT++Q  ++  L  AV   P P +L  +D       +L I +     + ++ I     
Sbjct: 25  APLTDRQTDSVLELKAAVENLPVPAELPIEDVCSLASQSLPIELTAVVPDSTEDILLKGF 84

Query: 90  ------EAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLTDRIRTCDVILRQVDDTL 149
                 E  +    QF+ WF+ L++ M  +   KY    + L+     CD IL  V+  L
Sbjct: 85  TSLGMEEERIETAQQFFSWFAKLQTQMDQDEGTKYRQMRDYLSGFQEQCDAILNDVNSAL 144

Query: 150 DLFNELQLQHQAVATKTRTLHDACDRL----GNMVD-SPHLNRKKRVFGSSRSYAEVARS 209
                LQ Q+  V+ KT TLH+AC++L      + D + H+ +K   F    +      S
Sbjct: 145 QHLESLQKQYLFVSNKTGTLHEACEQLLKEQSELADLAEHIQQKLSYFNELETINTKLNS 204

[Close]

BLAST of Cla007978 vs. TrEMBL
Match: D7TC86_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g00350 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 3.0e-68
Identity = 139/197 (70.56%), Postives = 155/197 (78.68%), Query Frame = 1


Query: 1   MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDR 60
           MA K A   LPKS AISKGYNFASTWEQNAPLTEQQQAAIATL HAVAERPFP +L+ + 
Sbjct: 1   MATKPASATLPKSAAISKGYNFASTWEQNAPLTEQQQAAIATLSHAVAERPFPANLSHEH 60

Query: 61  IGGKENALSISVKDTTNEDSDAIEAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLT 120
           I G+EN LS++ KD T EDS AIE VLVNTNQFYKWF+DLESAMKSETEEKY HY+N+LT
Sbjct: 61  ISGRENGLSVNTKDNTWEDSGAIETVLVNTNQFYKWFTDLESAMKSETEEKYRHYVNTLT 120

Query: 121 DRIRTCDVILRQVDDTLDLFNELQLQHQAVATKTRTLHDACDRLGNMVDSPHLNRKKRVF 180
           +RI+TCD IL QVD TLDLFNELQLQHQAVATKT+TLHDACDRL  +V+   L       
Sbjct: 121 ERIQTCDDILHQVDATLDLFNELQLQHQAVATKTKTLHDACDRL--LVEKQRLIEFAEAL 180

Query: 181 GSSRSYAE----VARSF 194
            S  +Y +    VA SF
Sbjct: 181 RSKLNYFDELENVATSF 195

[Close]

BLAST of Cla007978 vs. TrEMBL
Match: A0A0B0MER1_GOSAR (Conserved oligomeric Golgi complex subunit 3 OS=Gossypium arboreum GN=F383_13915 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 5.6e-67
Identity = 127/160 (79.38%), Postives = 141/160 (88.12%), Query Frame = 1


Query: 5   AAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDRIGGK 64
           A P  LPKSGAISKGYNFASTWEQNAPLTEQQQ AI  L HAVAERPFP +LAQ+R  G+
Sbjct: 7   ATPPNLPKSGAISKGYNFASTWEQNAPLTEQQQGAILMLSHAVAERPFPANLAQERTSGQ 66

Query: 65  ENALSISVKDTTNEDSDAIEAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLTDRIR 124
           +  LS+S KD    DS+AIEA+LVNTNQFYKWF+DLESAM+SETEEKY HY+N+LTDRI+
Sbjct: 67  DAGLSVSTKDNNFGDSEAIEAILVNTNQFYKWFTDLESAMRSETEEKYQHYVNTLTDRIQ 126

Query: 125 TCDVILRQVDDTLDLFNELQLQHQAVATKTRTLHDACDRL 165
           TCD ILRQVD+TLDLFNELQLQHQAVATKT+TLHDACDRL
Sbjct: 127 TCDDILRQVDETLDLFNELQLQHQAVATKTKTLHDACDRL 166

[Close]

BLAST of Cla007978 vs. TrEMBL
Match: A0A0B0MAQ5_GOSAR (Conserved oligomeric Golgi complex subunit 3 OS=Gossypium arboreum GN=F383_13915 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 5.6e-67
Identity = 127/160 (79.38%), Postives = 141/160 (88.12%), Query Frame = 1


Query: 5   AAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDRIGGK 64
           A P  LPKSGAISKGYNFASTWEQNAPLTEQQQ AI  L HAVAERPFP +LAQ+R  G+
Sbjct: 7   ATPPNLPKSGAISKGYNFASTWEQNAPLTEQQQGAILMLSHAVAERPFPANLAQERTSGQ 66

Query: 65  ENALSISVKDTTNEDSDAIEAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLTDRIR 124
           +  LS+S KD    DS+AIEA+LVNTNQFYKWF+DLESAM+SETEEKY HY+N+LTDRI+
Sbjct: 67  DAGLSVSTKDNNFGDSEAIEAILVNTNQFYKWFTDLESAMRSETEEKYQHYVNTLTDRIQ 126

Query: 125 TCDVILRQVDDTLDLFNELQLQHQAVATKTRTLHDACDRL 165
           TCD ILRQVD+TLDLFNELQLQHQAVATKT+TLHDACDRL
Sbjct: 127 TCDDILRQVDETLDLFNELQLQHQAVATKTKTLHDACDRL 166

[Close]

BLAST of Cla007978 vs. TrEMBL
Match: A0A061GJT4_THECC (Sec34-like family protein isoform 1 OS=Theobroma cacao GN=TCM_037450 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.1e-66
Identity = 125/160 (78.12%), Postives = 141/160 (88.12%), Query Frame = 1


Query: 5   AAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDRIGGK 64
           A P  LPKSGAISKGYNFASTWEQNAPLT+QQQ AI  L HAVAE PFP +LAQ+R  G+
Sbjct: 7   ATPPNLPKSGAISKGYNFASTWEQNAPLTDQQQGAIVMLSHAVAESPFPANLAQERTSGQ 66

Query: 65  ENALSISVKDTTNEDSDAIEAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLTDRIR 124
           +N LS+S KD    +S+AIEA+LVNTNQFYKWF+DLESAM+SETEEKY HY+N+LTDRI+
Sbjct: 67  DNGLSVSTKDNNFGNSEAIEAILVNTNQFYKWFTDLESAMRSETEEKYQHYVNTLTDRIQ 126

Query: 125 TCDVILRQVDDTLDLFNELQLQHQAVATKTRTLHDACDRL 165
           TCD ILRQVD+TLDLFNELQLQHQAVATKT+TLHDACDRL
Sbjct: 127 TCDDILRQVDETLDLFNELQLQHQAVATKTKTLHDACDRL 166

[Close]

BLAST of Cla007978 vs. TrEMBL
Match: A0A0D2SQ48_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G095200 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.1e-66
Identity = 126/160 (78.75%), Postives = 140/160 (87.50%), Query Frame = 1


Query: 5   AAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDRIGGK 64
           A P  LPKSGAISKGYNFASTWEQNAPLTEQQQ AI  L HAVAERPFP +LAQ+R  G+
Sbjct: 7   ATPPNLPKSGAISKGYNFASTWEQNAPLTEQQQGAILMLSHAVAERPFPANLAQERTSGQ 66

Query: 65  ENALSISVKDTTNEDSDAIEAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLTDRIR 124
           +  LS+S KD    DS AIEA+LVNTNQFYKWF+DLESAM+SETEEKY HY+N+LTDRI+
Sbjct: 67  DAGLSVSTKDNNFGDSGAIEAILVNTNQFYKWFTDLESAMRSETEEKYQHYVNTLTDRIQ 126

Query: 125 TCDVILRQVDDTLDLFNELQLQHQAVATKTRTLHDACDRL 165
           TCD ILRQVD+TLDLFNELQ+QHQAVATKT+TLHDACDRL
Sbjct: 127 TCDDILRQVDETLDLFNELQMQHQAVATKTKTLHDACDRL 166

[Close]

BLAST of Cla007978 vs. NCBI nr
Match: gi|659121240|ref|XP_008460560.1| (PREDICTED: conserved oligomeric Golgi complex subunit 3 [Cucumis melo])

HSP 1 Score: 319.7 bits (818), Expect = 4.3e-84
Identity = 159/164 (96.95%), Postives = 162/164 (98.78%), Query Frame = 1


Query: 1   MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDR 60
           MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATL HAVAERPFPVDLAQDR
Sbjct: 1   MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLGHAVAERPFPVDLAQDR 60

Query: 61  IGGKENALSISVKDTTNEDSDAIEAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLT 120
           IGGKENALSISVK+TTN+DSDA+EAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLT
Sbjct: 61  IGGKENALSISVKNTTNDDSDAVEAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLT 120

Query: 121 DRIRTCDVILRQVDDTLDLFNELQLQHQAVATKTRTLHDACDRL 165
           DRIRTCDVILRQVDDTL LFNELQLQHQAVATKTRTLHDACDRL
Sbjct: 121 DRIRTCDVILRQVDDTLGLFNELQLQHQAVATKTRTLHDACDRL 164

[Close]

BLAST of Cla007978 vs. NCBI nr
Match: gi|449449220|ref|XP_004142363.1| (PREDICTED: conserved oligomeric Golgi complex subunit 3 [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 2.1e-83
Identity = 157/164 (95.73%), Postives = 162/164 (98.78%), Query Frame = 1


Query: 1   MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDR 60
           MAAKAAPLG+PKSGAISKGYNFASTWEQNAPLTEQQQAAIATL HAV+ERPFPVDLAQDR
Sbjct: 1   MAAKAAPLGVPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLGHAVSERPFPVDLAQDR 60

Query: 61  IGGKENALSISVKDTTNEDSDAIEAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLT 120
           IGGKENALSISVK+TTN+DSDA+EAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLT
Sbjct: 61  IGGKENALSISVKNTTNDDSDAVEAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLT 120

Query: 121 DRIRTCDVILRQVDDTLDLFNELQLQHQAVATKTRTLHDACDRL 165
           DRIRTCDVILRQVDDTL LFNELQLQHQAVATKTRTLHDACDRL
Sbjct: 121 DRIRTCDVILRQVDDTLGLFNELQLQHQAVATKTRTLHDACDRL 164

[Close]

BLAST of Cla007978 vs. NCBI nr
Match: gi|359484460|ref|XP_002273836.2| (PREDICTED: conserved oligomeric Golgi complex subunit 3 [Vitis vinifera])

HSP 1 Score: 266.5 bits (680), Expect = 4.3e-68
Identity = 139/197 (70.56%), Postives = 155/197 (78.68%), Query Frame = 1


Query: 1   MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDR 60
           MA K A   LPKS AISKGYNFASTWEQNAPLTEQQQAAIATL HAVAERPFP +L+ + 
Sbjct: 1   MATKPASATLPKSAAISKGYNFASTWEQNAPLTEQQQAAIATLSHAVAERPFPANLSHEH 60

Query: 61  IGGKENALSISVKDTTNEDSDAIEAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLT 120
           I G+EN LS++ KD T EDS AIE VLVNTNQFYKWF+DLESAMKSETEEKY HY+N+LT
Sbjct: 61  ISGRENGLSVNTKDNTWEDSGAIETVLVNTNQFYKWFTDLESAMKSETEEKYRHYVNTLT 120

Query: 121 DRIRTCDVILRQVDDTLDLFNELQLQHQAVATKTRTLHDACDRLGNMVDSPHLNRKKRVF 180
           +RI+TCD IL QVD TLDLFNELQLQHQAVATKT+TLHDACDRL  +V+   L       
Sbjct: 121 ERIQTCDDILHQVDATLDLFNELQLQHQAVATKTKTLHDACDRL--LVEKQRLIEFAEAL 180

Query: 181 GSSRSYAE----VARSF 194
            S  +Y +    VA SF
Sbjct: 181 RSKLNYFDELENVATSF 195

[Close]

BLAST of Cla007978 vs. NCBI nr
Match: gi|720018135|ref|XP_010261686.1| (PREDICTED: conserved oligomeric Golgi complex subunit 3 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 264.2 bits (674), Expect = 2.1e-67
Identity = 128/164 (78.05%), Postives = 146/164 (89.02%), Query Frame = 1


Query: 1   MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDR 60
           MAAKA+   LPKSGA+SKGYNFASTWEQNAPLTEQQQ AI +L HAVAERPFP++++Q+ 
Sbjct: 1   MAAKASSAPLPKSGAVSKGYNFASTWEQNAPLTEQQQVAIVSLSHAVAERPFPINVSQEH 60

Query: 61  IGGKENALSISVKDTTNEDSDAIEAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLT 120
           I G+EN LS S KD T EDS AIEAVLVNT+QFYKWF+DL+SAMKSETEEKY HY+N+LT
Sbjct: 61  ISGQENGLSTSPKDKTLEDSGAIEAVLVNTHQFYKWFTDLQSAMKSETEEKYRHYVNTLT 120

Query: 121 DRIRTCDVILRQVDDTLDLFNELQLQHQAVATKTRTLHDACDRL 165
           +RI+TCD IL +VDDTLDLFNELQLQH AVATKT+TLHDACDRL
Sbjct: 121 ERIQTCDDILHKVDDTLDLFNELQLQHHAVATKTKTLHDACDRL 164

[Close]

BLAST of Cla007978 vs. NCBI nr
Match: gi|720018141|ref|XP_010261688.1| (PREDICTED: conserved oligomeric Golgi complex subunit 3 isoform X4 [Nelumbo nucifera])

HSP 1 Score: 264.2 bits (674), Expect = 2.1e-67
Identity = 128/164 (78.05%), Postives = 146/164 (89.02%), Query Frame = 1


Query: 1   MAAKAAPLGLPKSGAISKGYNFASTWEQNAPLTEQQQAAIATLCHAVAERPFPVDLAQDR 60
           MAAKA+   LPKSGA+SKGYNFASTWEQNAPLTEQQQ AI +L HAVAERPFP++++Q+ 
Sbjct: 1   MAAKASSAPLPKSGAVSKGYNFASTWEQNAPLTEQQQVAIVSLSHAVAERPFPINVSQEH 60

Query: 61  IGGKENALSISVKDTTNEDSDAIEAVLVNTNQFYKWFSDLESAMKSETEEKYHHYLNSLT 120
           I G+EN LS S KD T EDS AIEAVLVNT+QFYKWF+DL+SAMKSETEEKY HY+N+LT
Sbjct: 61  ISGQENGLSTSPKDKTLEDSGAIEAVLVNTHQFYKWFTDLQSAMKSETEEKYRHYVNTLT 120

Query: 121 DRIRTCDVILRQVDDTLDLFNELQLQHQAVATKTRTLHDACDRL 165
           +RI+TCD IL +VDDTLDLFNELQLQH AVATKT+TLHDACDRL
Sbjct: 121 ERIQTCDDILHKVDDTLDLFNELQLQHHAVATKTKTLHDACDRL 164

The following BLAST results are available for this feature:

BLAST of Cla007978 vs. Swiss-Prot


Match Name	E-value	Identity	Description
COG3_HUMAN	4.4e-12	28.65	Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3 PE=1 SV=3	[more]
COG3_MOUSE	2.4e-10	26.02	Conserved oligomeric Golgi complex subunit 3 OS=Mus musculus GN=Cog3 PE=1 SV=3	[more]

BLAST of Cla007978 vs. TrEMBL


Match Name	E-value	Identity	Description
D7TC86_VITVI	3.0e-68	70.56	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g00350 PE=4 SV=...	[more]
A0A0B0MER1_GOSAR	5.6e-67	79.38	Conserved oligomeric Golgi complex subunit 3 OS=Gossypium arboreum GN=F383_13915...	[more]
A0A0B0MAQ5_GOSAR	5.6e-67	79.38	Conserved oligomeric Golgi complex subunit 3 OS=Gossypium arboreum GN=F383_13915...	[more]
A0A061GJT4_THECC	2.1e-66	78.13	Sec34-like family protein isoform 1 OS=Theobroma cacao GN=TCM_037450 PE=4 SV=1	[more]
A0A0D2SQ48_GOSRA	2.1e-66	78.75	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G095200 PE=4 SV=1	[more]

BLAST of Cla007978 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121240\|ref\|XP_008460560.1\|	4.3e-84	96.95	PREDICTED: conserved oligomeric Golgi complex subunit 3 [Cucumis melo]	[more]
gi\|449449220\|ref\|XP_004142363.1\|	2.1e-83	95.73	PREDICTED: conserved oligomeric Golgi complex subunit 3 [Cucumis sativus]	[more]
gi\|359484460\|ref\|XP_002273836.2\|	4.3e-68	70.56	PREDICTED: conserved oligomeric Golgi complex subunit 3 [Vitis vinifera]	[more]
gi\|720018135\|ref\|XP_010261686.1\|	2.1e-67	78.05	PREDICTED: conserved oligomeric Golgi complex subunit 3 isoform X2 [Nelumbo nuci...	[more]
gi\|720018141\|ref\|XP_010261688.1\|	2.1e-67	78.05	PREDICTED: conserved oligomeric Golgi complex subunit 3 isoform X4 [Nelumbo nuci...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007265	COG_su3

Vocabulary: **Cellular Component**
Term	Definition
GO:0005801	cis-Golgi network
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005801	cis-Golgi network
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU28741	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU62845	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007978	Cla007978.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU28741	WMU28741	transcribed_cluster
WMU62845	WMU62845	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007265	Conserved oligomeric Golgi complex, subunit 3	PANTHER	PTHR13302	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3	coord: 1..164 score: 2.1
IPR007265	Conserved oligomeric Golgi complex, subunit 3	PFAM	PF04136	Sec34	coord: 115..165 score: 2.
None	No IPR available	PANTHER	PTHR13302:SF8	CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 3	coord: 1..164 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007978	ClCG08G005080	Watermelon (Charleston Gray)	wcgwmB402

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007978	Silver-seed gourd	carwmB0952
Cla007978	Cucumber (Chinese Long) v3	cucwmB484
Cla007978	Watermelon (97103) v2	wmwmbB102
Cla007978	Wax gourd	wgowmB318
Cla007978	Cucumber (Gy14) v1	cgywmB659
Cla007978	Cucurbita maxima (Rimu)	cmawmB262
Cla007978	Cucurbita maxima (Rimu)	cmawmB669
Cla007978	Cucurbita moschata (Rifu)	cmowmB252
Cla007978	Cucurbita moschata (Rifu)	cmowmB664
Cla007978	Wild cucumber (PI 183967)	cpiwmB474
Cla007978	Melon (DHL92) v3.5.1	mewmB310
Cla007978	Cucumber (Chinese Long) v2	cuwmB459
Cla007978	Cucurbita pepo (Zucchini)	cpewmB172
Cla007978	Cucurbita pepo (Zucchini)	cpewmB398
Cla007978	Bottle gourd (USVL1VR-Ls)	lsiwmB468
Cla007978	Cucumber (Gy14) v2	cgybwmB431
Cla007978	Melon (DHL92) v3.6.1	medwmB304