Cla007965 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007965
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Transcription factor (AHRD V1 -- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
Location	Chr8 : 5109699 .. 5111502 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCCAATCATTTAGAGATGATGAGCAACCATTTTACAGTGGAGAACTCCGATCAAAGTGATCATCAAGGACCAATCAGCTCCATTAATCCTTTTTTCACTGAGAGCTTTTGTCTTGAAAAGTTTGCTTATTTTAATGAAATCCCTAGCTGTGTTCCACCTCCTCTTTACTCTTCATTTCCTACATTTAACAGAGAAGATCCCAAGGTAAAAAATGACCCTTTTTTTCTTTTTTTTTTTTTTTTTTTAACTATTTATGAAAACTAAACTTATAAATGCTACTTTCACGTTGTGGGAAGAATATTTTTAAAATCTAAACCTCTGATGATTTTTTTTCTTTTTTTTTTTTTTTTCATTTTAAATTTGGCATAGAAGTTTGTTTTGGAAGAAAGGTGAATAACAAATAAAAATTAGTGAAAAACAAAATTGTTATGAGGTAGGGGTTTTGATTATGCGATTATATTGGGAGTTTAATTATTGTTTTGGGATTGGGCAGAGGTTGGGAGGAAGAAAGAGGAAAAGAGAAAATGAAAGGGATGAGGAGAAGCCAAAAGAAGTGATTCATGTGCGGGCAAAAAGAGGTGAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTATGCTTTCTTATAAACTGGTTTGCTTATCCAAATTGGGTTTTTTGTTTGGGAAAAATATTGAGGTTTTGGAACTTATTAGAAAATTAAAGATGGTTTTTGTTAATGAATGTATGTATGTTTAAATCATATTCATCCTTACACTTTAGTTTGTATAAAGTTTTGTTTAATAAGTACGGTTTGATATTTTACTTTCATCTGATAAATTTATTTGTTTTCTTATCTATTTTTTTCTTTTAATAGATTTTCAAAATGTTAGTCAAGTTTTAAAAACTTAAAAAAAGAAAAAAAAAATCATTTTTAATAATTTATACTTTTTACTTCTTGGAATTTGGTTTAGAATGAAATATTTCCTTAGAAAATAATGTTAACCATTGTAAAGAAAAATATGAAGAAATTAAAAGAACACCATTTTCAAAAACTAAGAAAAAAATCAAATGAATTTGAGTCTTCTTTTGAAATCCTAACAAAATGTAATCTATGAGAAAGGATATGTAGTTACTTAGTAGGTTTGCATATAGAGAGTATACTATTTGCTTGTAAGATATATATATATATTAATCTTGAGATATTTCATACCATGTTTTTTATTAGGAAACTTAAGAGAGAAAAAGTATGTGCAATAACTTTTAGAAGTATAAAGAATTTACAAATTGCAAATTGGTTATTAGGTAAGAAGAGAGAAAATAAACCAGAGACTGAGGTTCTTACAGGACTTGGTTCCAGGATGCTACAAGGTAATCAACACAAGGAGAATAATAAAATCTACAATAATAATTATAATAATTATTATTATTATTTTCAATTTTTGGCTAGAGAAAATATATTAAGAATTTATTTCTTTCTTTATTTTTATTTTTTCAGACAATGGGAATGGCAGTTATGTTGGATGTGATCATAAATTACATCCAATCTCTGCAGAATCAGATTGAGGTTAGTAATTATATCATACATAAAACTTGTGTTCAGTGGAATAAAATTAAAAAAAAAAAAATTAGAAAAGAATAAGAAGAAGTTGTACCATGTGGCAAATTATAATTGGATAATTTAATGAAATGCACAACGATGGATGTAAGTTAAGATGTACTCGAGTATTTTTTATAATTTTATTCCATGATGCAGGACAAGATAGTTGTATATATGAATAGGCACAATACATTCAGGTTGAATTCTTTGGCTCAATAA

mRNA sequence

ATGAGCTCCAATCATTTAGAGATGATGAGCAACCATTTTACAGTGGAGAACTCCGATCAAAGTGATCATCAAGGACCAATCAGCTCCATTAATCCTTTTTTCACTGAGAGCTTTTGTCTTGAAAAGTTTGCTTATTTTAATGAAATCCCTAGCTGTGTTCCACCTCCTCTTTACTCTTCATTTCCTACATTTAACAGAGAAGATCCCAAGAGGTTGGGAGGAAGAAAGAGGAAAAGAGAAAATGAAAGGGATGAGGAGAAGCCAAAAGAAGTGATTCATGTGCGGGCAAAAAGAGGTGAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTAAGAAGAGAGAAAATAAACCAGAGACTGAGGTTCTTACAGGACTTGGTTCCAGGATGCTACAAGACAATGGGAATGGCAGTTATGTTGGATGTGATCATAAATTACATCCAATCTCTGCAGAATCAGATTGAGGACAAGATAGTTGTATATATGAATAGGCACAATACATTCAGGTTGAATTCTTTGGCTCAATAA

Coding sequence (CDS)

ATGAGCTCCAATCATTTAGAGATGATGAGCAACCATTTTACAGTGGAGAACTCCGATCAAAGTGATCATCAAGGACCAATCAGCTCCATTAATCCTTTTTTCACTGAGAGCTTTTGTCTTGAAAAGTTTGCTTATTTTAATGAAATCCCTAGCTGTGTTCCACCTCCTCTTTACTCTTCATTTCCTACATTTAACAGAGAAGATCCCAAGAGGTTGGGAGGAAGAAAGAGGAAAAGAGAAAATGAAAGGGATGAGGAGAAGCCAAAAGAAGTGATTCATGTGCGGGCAAAAAGAGGTGAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTAAGAAGAGAGAAAATAAACCAGAGACTGAGGTTCTTACAGGACTTGGTTCCAGGATGCTACAAGACAATGGGAATGGCAGTTATGTTGGATGTGATCATAAATTACATCCAATCTCTGCAGAATCAGATTGAGGACAAGATAGTTGTATATATGAATAGGCACAATACATTCAGGTTGAATTCTTTGGCTCAATAA

Protein sequence

MSSNHLEMMSNHFTVENSDQSDHQGPISSINPFFTESFCLEKFAYFNEIPSCVPPPLYSSFPTFNREDPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIEDKIVVYMNRHNTFRLNSLAQ

Homology

[Close]

BLAST of Cla007965 vs. Swiss-Prot
Match: BH075_ARATH (Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-30
Identity = 71/116 (61.21%), Postives = 83/116 (71.55%), Query Frame = 1


Query: 66  REDPKRLGGRKRKRENERDEE--------KPKEVIHVRAKRGEATDSHSLAERVRREKIN 125
           R+  K   G KR+R+   +EE        KPK+V+HVRAKRG+ATDSHSLAERVRREKIN
Sbjct: 68  RKGNKEESGSKRRRKRSEEEEAMNGDETQKPKDVVHVRAKRGQATDSHSLAERVRREKIN 127

Query: 126 QRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIEDKIVVYMNRHNTFRLNSL 174
           +RL+ LQDLVPGCYK MGMAVMLDVII+Y++SLQNQIE   +        + LNSL
Sbjct: 128 ERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFLSMKLSAASACYDLNSL 183

[Close]

BLAST of Cla007965 vs. Swiss-Prot
Match: BEE3_ARATH (Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 61/86 (70.93%), Postives = 71/86 (82.56%), Query Frame = 1


Query: 70  KRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLVPG 129
           K    R+ KR   R+EEK +EV+HVRA+RG+ATDSHS+AERVRR KIN+RL+ LQD+VPG
Sbjct: 123 KNNSSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPG 182

Query: 130 CYKTMGMAVMLDVIINYIQSLQNQIE 156
           CYKTMGMA MLD IINY+QSLQNQ+E
Sbjct: 183 CYKTMGMATMLDEIINYVQSLQNQVE 208

[Close]

BLAST of Cla007965 vs. Swiss-Prot
Match: BEE1_ARATH (Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.0e-29
Identity = 59/82 (71.95%), Postives = 71/82 (86.59%), Query Frame = 1


Query: 74  GRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLVPGCYKT 133
           G++ K++ E ++EK +EV+HVRA+RG+ATDSHSLAERVRR KIN+RLR LQD+VPGCYK 
Sbjct: 125 GKRLKKKKEEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKA 184

Query: 134 MGMAVMLDVIINYIQSLQNQIE 156
           MGMA MLD IINY+QSLQNQ+E
Sbjct: 185 MGMATMLDEIINYVQSLQNQVE 206

[Close]

BLAST of Cla007965 vs. Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.7e-25
Identity = 62/130 (47.69%), Postives = 79/130 (60.77%), Query Frame = 1


Query: 47  NEIPSCVPPPLYSSFPTFN-----REDPKRLGGRKRKRENERDEEK-------------- 106
           N I +  P P +S     N      +  +  GG++R+ E + +EE+              
Sbjct: 233 NPISTASPSPSFSKTAEKNGGKGGSKSSEEKGGKRRREEEDDEEEEGEGEGNKSNNTKPP 292

Query: 107 --PKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLVPGCYKTMGMAVMLDVIIN 156
             PK+ IHVRA+RG+ATDSHSLAERVRREKI +R++ LQDLVPGC K  G A+MLD IIN
Sbjct: 293 EPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIIN 352

[Close]

BLAST of Cla007965 vs. Swiss-Prot
Match: BH137_ARATH (Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.4e-23
Identity = 69/165 (41.82%), Postives = 92/165 (55.76%), Query Frame = 1


Query: 1   MSSNHLEMMSNHFTVE-------NSDQSDHQGPISSINPFFTESFCLEKFAYFNEIPSCV 60
           +  NHL  + N  TVE       N D++++ G     N   T +         +  PS +
Sbjct: 33  IDQNHLYPLPNISTVEDISFLEYNVDKTENSGSEKLANTTKTATTGSSSCDQLSHGPSAI 92

Query: 61  PPPLYSSFPTFNREDPKRLG--GRKRKRENERD-EEKPKEVIHVRAKRGEATDSHSLAER 120
                +        +  + G  GRK K++     EE P + IHVRA+RG+ATDSHSLAER
Sbjct: 93  TNTGKTRGRKARNSNNSKEGVEGRKSKKQKRGSKEEPPTDYIHVRARRGQATDSHSLAER 152

Query: 121 VRREKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIE 156
           VRREKI++R+R LQ+LVPGC K  G A+MLD IINY+Q+LQ Q+E
Sbjct: 153 VRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVE 197

[Close]

BLAST of Cla007965 vs. TrEMBL
Match: F6HFN6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03720 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.5e-35
Identity = 76/88 (86.36%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 68  DPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLV 127
           D K LGGRKRKR NER+  KP+EVIHVRAKRG+ATDSHSLAERVRREKIN++LR LQDLV
Sbjct: 114 DNKNLGGRKRKRSNERENNKPREVIHVRAKRGQATDSHSLAERVRREKINEKLRCLQDLV 173

Query: 128 PGCYKTMGMAVMLDVIINYIQSLQNQIE 156
           PGCYKTMGMAVMLDVIINY+QSLQNQIE
Sbjct: 174 PGCYKTMGMAVMLDVIINYVQSLQNQIE 201

[Close]

BLAST of Cla007965 vs. TrEMBL
Match: A5B5L7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010828 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.5e-35
Identity = 76/88 (86.36%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 68  DPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLV 127
           D K LGGRKRKR NER+  KP+EVIHVRAKRG+ATDSHSLAERVRREKIN++LR LQDLV
Sbjct: 93  DNKNLGGRKRKRSNERENNKPREVIHVRAKRGQATDSHSLAERVRREKINEKLRCLQDLV 152

Query: 128 PGCYKTMGMAVMLDVIINYIQSLQNQIE 156
           PGCYKTMGMAVMLDVIINY+QSLQNQIE
Sbjct: 153 PGCYKTMGMAVMLDVIINYVQSLQNQIE 180

[Close]

BLAST of Cla007965 vs. TrEMBL
Match: V4U704_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016461mg PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.0e-33
Identity = 78/100 (78.00%), Postives = 85/100 (85.00%), Query Frame = 1


Query: 56  PLYSSFPTFNREDPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREK 115
           P  +S   F   + K L GRKRKR NER  EKPKEVIHVRAKRG+ATDSHSLAERVRRE+
Sbjct: 82  PTPASGSGFLSVNNKGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRRER 141

Query: 116 INQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIE 156
           IN+RLR LQDLVPGCYKTMGMAVMLDVIINY++SLQNQIE
Sbjct: 142 INERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIE 181

[Close]

BLAST of Cla007965 vs. TrEMBL
Match: A0A067GNR6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042908mg PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-33
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 1


Query: 72  LGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLVPGCY 131
           L GRKRKR NER  EKPKEVIHVRAKRG+ATDSHSLAERVRREKIN+RLR LQDLVPGCY
Sbjct: 103 LSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCY 162

Query: 132 KTMGMAVMLDVIINYIQSLQNQIE 156
           KTMGMAVMLDVIINY++SLQNQIE
Sbjct: 163 KTMGMAVMLDVIINYVRSLQNQIE 186

[Close]

BLAST of Cla007965 vs. TrEMBL
Match: A0A067JZM3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18352 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-33
Identity = 79/105 (75.24%), Postives = 90/105 (85.71%), Query Frame = 1


Query: 54  PPPLYSSFPTFNRED--PKRLGGRKRKRENE-RDEEKPKEVIHVRAKRGEATDSHSLAER 113
           PP L ++  T N ++      GGRKRKR++E +D EKPKEVIHVRAKRG+ATDSHSLAER
Sbjct: 57  PPALSATGLTGNNQNVITNSCGGRKRKRKDEIKDMEKPKEVIHVRAKRGQATDSHSLAER 116

Query: 114 VRREKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIE 156
           VRREKIN++LR LQDLVPGCYKTMGMAVMLDVIINY+QSLQNQIE
Sbjct: 117 VRREKINEKLRSLQDLVPGCYKTMGMAVMLDVIINYVQSLQNQIE 161

[Close]

BLAST of Cla007965 vs. NCBI nr
Match: gi|147773703|emb|CAN76460.1| (hypothetical protein VITISV_010828 [Vitis vinifera])

HSP 1 Score: 156.8 bits (395), Expect = 3.6e-35
Identity = 76/88 (86.36%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 68  DPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLV 127
           D K LGGRKRKR NER+  KP+EVIHVRAKRG+ATDSHSLAERVRREKIN++LR LQDLV
Sbjct: 93  DNKNLGGRKRKRSNERENNKPREVIHVRAKRGQATDSHSLAERVRREKINEKLRCLQDLV 152

Query: 128 PGCYKTMGMAVMLDVIINYIQSLQNQIE 156
           PGCYKTMGMAVMLDVIINY+QSLQNQIE
Sbjct: 153 PGCYKTMGMAVMLDVIINYVQSLQNQIE 180

[Close]

BLAST of Cla007965 vs. NCBI nr
Match: gi|297737801|emb|CBI27002.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 156.8 bits (395), Expect = 3.6e-35
Identity = 76/88 (86.36%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 68  DPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLV 127
           D K LGGRKRKR NER+  KP+EVIHVRAKRG+ATDSHSLAERVRREKIN++LR LQDLV
Sbjct: 97  DNKNLGGRKRKRSNERENNKPREVIHVRAKRGQATDSHSLAERVRREKINEKLRCLQDLV 156

Query: 128 PGCYKTMGMAVMLDVIINYIQSLQNQIE 156
           PGCYKTMGMAVMLDVIINY+QSLQNQIE
Sbjct: 157 PGCYKTMGMAVMLDVIINYVQSLQNQIE 184

[Close]

BLAST of Cla007965 vs. NCBI nr
Match: gi|225424017|ref|XP_002279412.1| (PREDICTED: transcription factor bHLH75 [Vitis vinifera])

HSP 1 Score: 156.8 bits (395), Expect = 3.6e-35
Identity = 76/88 (86.36%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 68  DPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLV 127
           D K LGGRKRKR NER+  KP+EVIHVRAKRG+ATDSHSLAERVRREKIN++LR LQDLV
Sbjct: 114 DNKNLGGRKRKRSNERENNKPREVIHVRAKRGQATDSHSLAERVRREKINEKLRCLQDLV 173

Query: 128 PGCYKTMGMAVMLDVIINYIQSLQNQIE 156
           PGCYKTMGMAVMLDVIINY+QSLQNQIE
Sbjct: 174 PGCYKTMGMAVMLDVIINYVQSLQNQIE 201

[Close]

BLAST of Cla007965 vs. NCBI nr
Match: gi|802681813|ref|XP_012082161.1| (PREDICTED: transcription factor BEE 3-like [Jatropha curcas])

HSP 1 Score: 155.2 bits (391), Expect = 1.0e-34
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = 1


Query: 54  PPPLYSSFPTFNREDPKRLGGRKRKRENE-RDEEKPKEVIHVRAKRGEATDSHSLAERVR 113
           PP L ++  T N ++ +  GGRKRKR++E +D EKPKEVIHVRAKRG+ATDSHSLAERVR
Sbjct: 57  PPALSATGLTGNNQNLQSCGGRKRKRKDEIKDMEKPKEVIHVRAKRGQATDSHSLAERVR 116

Query: 114 REKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIE 156
           REKIN++LR LQDLVPGCYKTMGMAVMLDVIINY+QSLQNQIE
Sbjct: 117 REKINEKLRSLQDLVPGCYKTMGMAVMLDVIINYVQSLQNQIE 159

[Close]

BLAST of Cla007965 vs. NCBI nr
Match: gi|567912277|ref|XP_006448452.1| (hypothetical protein CICLE_v10016461mg [Citrus clementina])

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 78/100 (78.00%), Postives = 85/100 (85.00%), Query Frame = 1


Query: 56  PLYSSFPTFNREDPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREK 115
           P  +S   F   + K L GRKRKR NER  EKPKEVIHVRAKRG+ATDSHSLAERVRRE+
Sbjct: 82  PTPASGSGFLSVNNKGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRRER 141

Query: 116 INQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIE 156
           IN+RLR LQDLVPGCYKTMGMAVMLDVIINY++SLQNQIE
Sbjct: 142 INERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIE 181

The following BLAST results are available for this feature:

BLAST of Cla007965 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BH075_ARATH	2.0e-30	61.21	Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1	[more]
BEE3_ARATH	1.7e-29	70.93	Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1	[more]
BEE1_ARATH	5.0e-29	71.95	Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1	[more]
BH078_ARATH	9.7e-25	47.69	Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=1 SV=1	[more]
BH137_ARATH	1.4e-23	41.82	Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1	[more]

BLAST of Cla007965 vs. TrEMBL


Match Name	E-value	Identity	Description
F6HFN6_VITVI	2.5e-35	86.36	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g03720 PE=4 SV=...	[more]
A5B5L7_VITVI	2.5e-35	86.36	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010828 PE=4 SV=1	[more]
V4U704_9ROSI	1.0e-33	78.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016461mg PE=4 SV=1	[more]
A0A067GNR6_CITSI	1.4e-33	89.29	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042908mg PE=4 SV=1	[more]
A0A067JZM3_JATCU	1.8e-33	75.24	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18352 PE=4 SV=1	[more]

BLAST of Cla007965 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147773703\|emb\|CAN76460.1\|	3.6e-35	86.36	hypothetical protein VITISV_010828 [Vitis vinifera]	[more]
gi\|297737801\|emb\|CBI27002.3\|	3.6e-35	86.36	unnamed protein product [Vitis vinifera]	[more]
gi\|225424017\|ref\|XP_002279412.1\|	3.6e-35	86.36	PREDICTED: transcription factor bHLH75 [Vitis vinifera]	[more]
gi\|802681813\|ref\|XP_012082161.1\|	1.0e-34	76.70	PREDICTED: transcription factor BEE 3-like [Jatropha curcas]	[more]
gi\|567912277\|ref\|XP_006448452.1\|	1.5e-33	78.00	hypothetical protein CICLE_v10016461mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048441	petal development
biological_process	GO:2000488	positive regulation of brassinosteroid biosynthetic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048443	stamen development
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007965	Cla007965.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 100..156 score: 6.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 104..151 score: 1.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 106..156 score: 8.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 100..150 score: 15
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 98..159 score: 1.96
None	No IPR available	PANTHER	PTHR12565	STEROL REGULATORY ELEMENT-BINDING PROTEIN	coord: 65..155 score: 1.4
None	No IPR available	PANTHER	PTHR12565:SF128	TRANSCRIPTION FACTOR BHLH75	coord: 65..155 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007965	Cla97C08G147880	Watermelon (97103) v2	wmwmbB102
Cla007965	ClCG08G004990	Watermelon (Charleston Gray)	wcgwmB402
Cla007965	CmaCh15G009150	Cucurbita maxima (Rimu)	cmawmB262
Cla007965	CmoCh15G009540	Cucurbita moschata (Rifu)	cmowmB252
Cla007965	Cp4.1LG13g06830	Cucurbita pepo (Zucchini)	cpewmB172

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007965	Cucurbita pepo (Zucchini)	cpewmB398
Cla007965	Bottle gourd (USVL1VR-Ls)	lsiwmB468
Cla007965	Cucumber (Gy14) v2	cgybwmB431
Cla007965	Melon (DHL92) v3.6.1	medwmB304
Cla007965	Cucumber (Chinese Long) v3	cucwmB484
Cla007965	Wax gourd	wgowmB318
Cla007965	Cucumber (Gy14) v1	cgywmB659
Cla007965	Cucurbita maxima (Rimu)	cmawmB669
Cla007965	Cucurbita moschata (Rifu)	cmowmB664
Cla007965	Wild cucumber (PI 183967)	cpiwmB474
Cla007965	Melon (DHL92) v3.5.1	mewmB310
Cla007965	Cucumber (Chinese Long) v2	cuwmB459