Cla007959 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007959
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr8 : 4868555 .. 4869130 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACGCCTACATACGCCGAAATGAATGACGCCCTCATAATCATCACCAAACTGGGGTCAGAGTGGAACATTTCCCCAAAGGGCATTCAGTCATTGGCGTCTAACTGCTTGATCGCCGAAGCCAACCTGTGGCTTTATTTCATCAAGCGGTCGCTGCTCCCCACAACGCATGACGCCTCAATTTCAAGAGACCGTGGCATGGTCATTTACTGCATCATGCGAGGAATTCAGCTAGACGTGGGACACATCATTGCCCCACAGATTTGGGGGTTGTTCTTCAAGCCAAGGGGTCAGTTACTCGTCCCCTTTCTTGTGACAAGACTGTGCGCCAATGCAGAGTTCATAGAGGATGCGCTAGTCAGAGCAGTGAACGGAGTCCTTTCAGCGCAAAGTTTGAGACGAATATTAAAGGACTCACCGCATCTGCTTGACGCGGCCAACTCAAAGAAGAGGTTGCCAAAGTCACAAGAACAATCATCCCCCCAACTTCCTCAACCAAAGAAGAGAAAACTGGTCAAGAAGAATTTTGAGATTCAGGCGTCGAGTTCACAACCTGGTGATGAGCACTTTTAG

mRNA sequence

ATGTCGACGCCTACATACGCCGAAATGAATGACGCCCTCATAATCATCACCAAACTGGGGTCAGAGTGGAACATTTCCCCAAAGGGCATTCAGTCATTGGCGTCTAACTGCTTGATCGCCGAAGCCAACCTGTGGCTTTATTTCATCAAGCGGTCGCTGCTCCCCACAACGCATGACGCCTCAATTTCAAGAGACCGTGGCATGGTCATTTACTGCATCATGCGAGGAATTCAGCTAGACGTGGGACACATCATTGCCCCACAGATTTGGGGGTTGTTCTTCAAGCCAAGGGGTCAGTTACTCGTCCCCTTTCTTGTGACAAGACTGTGCGCCAATGCAGAGTTCATAGAGGATGCGCTAGTCAGAGCAGTGAACGGAGTCCTTTCAGCGCAAAGTTTGAGACGAATATTAAAGGACTCACCGCATCTGCTTGACGCGGCCAACTCAAAGAAGAGGTTGCCAAAGTCACAAGAACAATCATCCCCCCAACTTCCTCAACCAAAGAAGAGAAAACTGGTCAAGAAGAATTTTGAGATTCAGGCGTCGAGTTCACAACCTGGTGATGAGCACTTTTAG

Coding sequence (CDS)

ATGTCGACGCCTACATACGCCGAAATGAATGACGCCCTCATAATCATCACCAAACTGGGGTCAGAGTGGAACATTTCCCCAAAGGGCATTCAGTCATTGGCGTCTAACTGCTTGATCGCCGAAGCCAACCTGTGGCTTTATTTCATCAAGCGGTCGCTGCTCCCCACAACGCATGACGCCTCAATTTCAAGAGACCGTGGCATGGTCATTTACTGCATCATGCGAGGAATTCAGCTAGACGTGGGACACATCATTGCCCCACAGATTTGGGGGTTGTTCTTCAAGCCAAGGGGTCAGTTACTCGTCCCCTTTCTTGTGACAAGACTGTGCGCCAATGCAGAGTTCATAGAGGATGCGCTAGTCAGAGCAGTGAACGGAGTCCTTTCAGCGCAAAGTTTGAGACGAATATTAAAGGACTCACCGCATCTGCTTGACGCGGCCAACTCAAAGAAGAGGTTGCCAAAGTCACAAGAACAATCATCCCCCCAACTTCCTCAACCAAAGAAGAGAAAACTGGTCAAGAAGAATTTTGAGATTCAGGCGTCGAGTTCACAACCTGGTGATGAGCACTTTTAG

Protein sequence

MSTPTYAEMNDALIIITKLGSEWNISPKGIQSLASNCLIAEANLWLYFIKRSLLPTTHDASISRDRGMVIYCIMRGIQLDVGHIIAPQIWGLFFKPRGQLLVPFLVTRLCANAEFIEDALVRAVNGVLSAQSLRRILKDSPHLLDAANSKKRLPKSQEQSSPQLPQPKKRKLVKKNFEIQASSSQPGDEHF

Homology

[Close]

BLAST of Cla007959 vs. TrEMBL
Match: W9RBS1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-08
Identity = 35/112 (31.25%), Postives = 62/112 (55.36%), Query Frame = 1


Query: 8   EMNDALIIITKLGSEWNISPKGIQSLASNCLIAEANLWLYFIKRSLLPTTHDASISRDRG 67
           ++ + L  I  LG++W +S KG  +   + L   A +W +F+   LL +TH  +ISR+R 
Sbjct: 156 QLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRA 215

Query: 68  MVIYCIMRGIQLDVGHIIAPQIWGLFFKPRGQLLVPFLVTRLCANAEFIEDA 120
           +++Y ++ G  ++VG +I  QI     K +G L  P L++ LC  +    +A
Sbjct: 216 ILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEA 267

[Close]

BLAST of Cla007959 vs. TrEMBL
Match: W9S7D3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.2e-08
Identity = 28/91 (30.77%), Postives = 53/91 (58.24%), Query Frame = 1


Query: 20  GSEWNISPKGIQSLASNCLIAEANLWLYFIKRSLLPTTHDASISRDRGMVIYCIMRGIQL 79
           G+EW  + +G  +    CL     +W +F++  L+P++H   + ++R +++YC+M+G  L
Sbjct: 135 GTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPL 194

Query: 80  DVGHIIAPQIWGLFFKPRGQLLVPFLVTRLC 111
           +VG +I  Q+     +  G L  P L+T+LC
Sbjct: 195 NVGRMIRQQVGVCAGRKNGGLWFPSLITQLC 225

[Close]

BLAST of Cla007959 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.2e-08
Identity = 34/96 (35.42%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 44  LWLYFIKRSLLPTTHDASISRDRGMVIYCIMRGIQLDVGHIIAPQIWGLFFKPRGQLLVP 103
           +WL  IK+ ++PT H ++IS +R M++YCIM+ I +++G II+  I  L   PRG     
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 104 FLVTRLCANAEFIEDAL--VRAVNGVLSAQSLRRIL 138
           +L+ +LC  A  + + L  V   +G+    +L RI+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII 123

[Close]

BLAST of Cla007959 vs. TrEMBL
Match: W9QTD9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 36/120 (30.00%), Postives = 64/120 (53.33%), Query Frame = 1


Query: 20  GSEWNISPKGIQSLASNCLIAEANLWLYFIKRSLLPTTHDASISRDRGMVIYCIMRGIQL 79
           G+ W ISP+G  +     L   A +W +F+    +P+TH  ++++DR +++Y I+ GI +
Sbjct: 96  GATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDRVLLLYSILTGISV 155

Query: 80  DVGHIIAPQIWGL-FFKPRGQLLVPFLVTRLC--ANAEFIEDALVRAVNGVLSAQSLRRI 137
           ++  I   +I      + RG L  P L+T+L   AN  + +D  +    G +S  S+ RI
Sbjct: 156 NIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKDEAIVHNAGAISTLSISRI 215

[Close]

BLAST of Cla007959 vs. NCBI nr
Match: gi|703082781|ref|XP_010092041.1| (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 67.4 bits (163), Expect = 3.1e-08
Identity = 35/112 (31.25%), Postives = 62/112 (55.36%), Query Frame = 1


Query: 8   EMNDALIIITKLGSEWNISPKGIQSLASNCLIAEANLWLYFIKRSLLPTTHDASISRDRG 67
           ++ + L  I  LG++W +S KG  +   + L   A +W +F+   LL +TH  +ISR+R 
Sbjct: 156 QLKEVLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFLASRLLLSTHGKTISRNRA 215

Query: 68  MVIYCIMRGIQLDVGHIIAPQIWGLFFKPRGQLLVPFLVTRLCANAEFIEDA 120
           +++Y ++ G  ++VG +I  QI     K +G L  P L++ LC  +    +A
Sbjct: 216 ILLYAVLVGKPINVGRLIIDQIRACAEKGKGGLYFPSLISELCIQSHVAWEA 267

[Close]

BLAST of Cla007959 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 34/96 (35.42%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 44  LWLYFIKRSLLPTTHDASISRDRGMVIYCIMRGIQLDVGHIIAPQIWGLFFKPRGQLLVP 103
           +WL  IK+ ++PT H ++IS +R M++YCIM+ I +++G II+  I  L   PRG     
Sbjct: 28  IWLVLIKKKIMPTRHVSTISMERVMLVYCIMKKILVNIGKIISNHIIALVKHPRGARPFS 87

Query: 104 FLVTRLCANAEFIEDAL--VRAVNGVLSAQSLRRIL 138
           +L+ +LC  A  + + L  V   +G+    +L RI+
Sbjct: 88  YLIEQLCLRACLMLEKLPQVEVKDGIWLPSTLHRII 123

[Close]

BLAST of Cla007959 vs. NCBI nr
Match: gi|703121924|ref|XP_010102456.1| (hypothetical protein L484_006967 [Morus notabilis])

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 28/91 (30.77%), Postives = 53/91 (58.24%), Query Frame = 1


Query: 20  GSEWNISPKGIQSLASNCLIAEANLWLYFIKRSLLPTTHDASISRDRGMVIYCIMRGIQL 79
           G+EW  + +G  +    CL     +W +F++  L+P++H   + ++R +++YC+M+G  L
Sbjct: 135 GTEWWRATRGSMTFPKECLQPGPKIWYHFLRFRLMPSSHYRLVHKERAILLYCMMKGRPL 194

Query: 80  DVGHIIAPQIWGLFFKPRGQLLVPFLVTRLC 111
           +VG +I  Q+     +  G L  P L+T+LC
Sbjct: 195 NVGRMIRQQVGVCAGRKNGGLWFPSLITQLC 225

[Close]

BLAST of Cla007959 vs. NCBI nr
Match: gi|703087370|ref|XP_010093253.1| (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07
Identity = 36/120 (30.00%), Postives = 64/120 (53.33%), Query Frame = 1


Query: 20  GSEWNISPKGIQSLASNCLIAEANLWLYFIKRSLLPTTHDASISRDRGMVIYCIMRGIQL 79
           G+ W ISP+G  +     L   A +W +F+    +P+TH  ++++DR +++Y I+ GI +
Sbjct: 96  GATWQISPQGAYTCIRKELKRHAQIWYHFLTARFMPSTHGKTVAKDRVLLLYSILTGISV 155

Query: 80  DVGHIIAPQIWGL-FFKPRGQLLVPFLVTRLC--ANAEFIEDALVRAVNGVLSAQSLRRI 137
           ++  I   +I      + RG L  P L+T+L   AN  + +D  +    G +S  S+ RI
Sbjct: 156 NIEEITIKEIKACSAARKRGGLYFPSLITQLWLKANVPYHKDEAIVHNAGAISTLSISRI 215

[Close]

BLAST of Cla007959 vs. NCBI nr
Match: gi|1021475585|ref|XP_016165875.1| (PREDICTED: involucrin-like [Arachis ipaensis])

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-06
Identity = 44/172 (25.58%), Postives = 83/172 (48.26%), Query Frame = 1


Query: 22  EWNISPKGIQ-SLASNCLIAEANLWLYFIKRSLLPTTHDASISRDRGMVIYCIMRGIQLD 81
           +W +   G+   L    L  +A  W   ++RSL+PT++++ ++ +R ++I+CIM+G +++
Sbjct: 2   DWVLDSHGLPLKLRRGDLTPQAKGWHDIVRRSLIPTSNNSEVTVNRAIMIHCIMKGGEIN 61

Query: 82  VGHIIAPQIWGLFFKPR--GQLLVPFLVTRLCANA-----EFIEDALVRAVNGVLSAQSL 141
           VG +IA  I  +  K +    L  P  + RLC  A     EF E  +V ++   L+ + L
Sbjct: 62  VGEVIANNIIDIAEKVKQDSWLGYPSTILRLCKEARVPLEEFKETDMV-SIGKPLTKERL 121

Query: 142 RRILKDSPHLLDAANSKKRLPKSQEQSSPQLPQPKKRKLVKKNFEIQASSSQ 186
             +          A  KKR    QE+   ++ +P    + +    ++  S Q
Sbjct: 122 EFVTTTQLERQPLARRKKRKEARQEEERQEMEEPSTLNMNQLQAALEGISGQ 172

The following BLAST results are available for this feature:

BLAST of Cla007959 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RBS1_9ROSA	2.2e-08	31.25	Uncharacterized protein OS=Morus notabilis GN=L484_000844 PE=4 SV=1	[more]
W9S7D3_9ROSA	8.2e-08	30.77	Uncharacterized protein OS=Morus notabilis GN=L484_006967 PE=4 SV=1	[more]
A0A0A0LAN0_CUCSA	8.2e-08	35.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1	[more]
W9QTD9_9ROSA	1.4e-07	30.00	Uncharacterized protein OS=Morus notabilis GN=L484_022412 PE=4 SV=1	[more]

BLAST of Cla007959 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703082781\|ref\|XP_010092041.1\|	3.1e-08	31.25	hypothetical protein L484_000844 [Morus notabilis]	[more]
gi\|700202594\|gb\|KGN57727.1\|	1.2e-07	35.42	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]
gi\|703121924\|ref\|XP_010102456.1\|	1.2e-07	30.77	hypothetical protein L484_006967 [Morus notabilis]	[more]
gi\|703087370\|ref\|XP_010093253.1\|	2.0e-07	30.00	hypothetical protein L484_022412 [Morus notabilis]	[more]
gi\|1021475585\|ref\|XP_016165875.1\|	2.9e-06	25.58	PREDICTED: involucrin-like [Arachis ipaensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007959	Cla007959.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007959	Wax gourd	wgowmB318
Cla007959	Cucumber (Gy14) v1	cgywmB659
Cla007959	Cucurbita maxima (Rimu)	cmawmB262
Cla007959	Cucurbita maxima (Rimu)	cmawmB669
Cla007959	Cucurbita moschata (Rifu)	cmowmB252
Cla007959	Cucurbita moschata (Rifu)	cmowmB664
Cla007959	Wild cucumber (PI 183967)	cpiwmB474
Cla007959	Melon (DHL92) v3.5.1	mewmB310
Cla007959	Watermelon (Charleston Gray)	wcgwmB402
Cla007959	Cucumber (Chinese Long) v2	cuwmB459
Cla007959	Cucurbita pepo (Zucchini)	cpewmB172
Cla007959	Bottle gourd (USVL1VR-Ls)	lsiwmB468
Cla007959	Cucumber (Gy14) v2	cgybwmB431
Cla007959	Melon (DHL92) v3.6.1	medwmB304
Cla007959	Cucumber (Chinese Long) v3	cucwmB484
Cla007959	Watermelon (97103) v2	wmwmbB102