Cla007958 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007958
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr8 : 4866426 .. 4867163 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTTCAGCTTCCTATCGCAGATTTAAACGAAGAGTCGAAGGAAGTGTCGCCGCTTTCTTCGCCCCATCTGGAGTTAACCTTCTCCCCGCCTCAATTATCCACCTTTCGAGAGGCAACTCCACCACCACCACCACCACCCGTTGAGCCGCCGACCCTGACTCTGGATCCTGAGGAGTCAGCGCCCTTTCAATTCTCACCGCCTCGCCATGCACCTCAATTTTCCAATCTTCCAACTCCACCAACTACCGATCCTTCTGCCTGCCCAACATCTCAACTGCAGGCAGAAGCAACTACTAGCACTCATCATCAAGAGGAACCATCTCATTTGCGGCATGCCTCTCCTCCACTGCCGTTTGTTGATTTAAATTTGGATGATTTGCTGCGGTACTTGGATGATGGGATCCTTCACCCCATCATGAGAGATCTGGATGAAATTCGGCGCAAGGTGATGGAAAGTATCCAGCGGCAACAAAAGTTAGCTCAACAAGTTTCACAATTGGGTCAGCAAGTGACTCAGATGGCGCAGCAACAATCGGAGCTTCAGAGTTTTGTTCAACGCCAAGCTCGGCGTCAGGATGAACAATTCAGCACTTTGATGAATTGTATTTATGAAGTGTTCGTTCGACGCATCCCAGCGCCAGTTATTCCTCCTTCCCTTCAGCAACCCCTTCAGTTTAACGATCCAACTCCTCCCCCTGCAGACAACAATGACAACGCCCCGGGGAGAACTTAA

mRNA sequence

ATGCCTTTTCAGCTTCCTATCGCAGATTTAAACGAAGAGTCGAAGGAAGTGTCGCCGCTTTCTTCGCCCCATCTGGAGTTAACCTTCTCCCCGCCTCAATTATCCACCTTTCGAGAGGCAACTCCACCACCACCACCACCACCCGTTGAGCCGCCGACCCTGACTCTGGATCCTGAGGAGTCAGCGCCCTTTCAATTCTCACCGCCTCGCCATGCACCTCAATTTTCCAATCTTCCAACTCCACCAACTACCGATCCTTCTGCCTGCCCAACATCTCAACTGCAGGCAGAAGCAACTACTAGCACTCATCATCAAGAGGAACCATCTCATTTGCGGCATGCCTCTCCTCCACTGCCGTTTGTTGATTTAAATTTGGATGATTTGCTGCGGTACTTGGATGATGGGATCCTTCACCCCATCATGAGAGATCTGGATGAAATTCGGCGCAAGGTGATGGAAAGTATCCAGCGGCAACAAAAGTTAGCTCAACAAGTTTCACAATTGGGTCAGCAAGTGACTCAGATGGCGCAGCAACAATCGGAGCTTCAGAGTTTTGTTCAACGCCAAGCTCGGCGTCAGGATGAACAATTCAGCACTTTGATGAATTGTATTTATGAAGTGTTCGTTCGACGCATCCCAGCGCCAGTTATTCCTCCTTCCCTTCAGCAACCCCTTCAGTTTAACGATCCAACTCCTCCCCCTGCAGACAACAATGACAACGCCCCGGGGAGAACTTAA

Coding sequence (CDS)

ATGCCTTTTCAGCTTCCTATCGCAGATTTAAACGAAGAGTCGAAGGAAGTGTCGCCGCTTTCTTCGCCCCATCTGGAGTTAACCTTCTCCCCGCCTCAATTATCCACCTTTCGAGAGGCAACTCCACCACCACCACCACCACCCGTTGAGCCGCCGACCCTGACTCTGGATCCTGAGGAGTCAGCGCCCTTTCAATTCTCACCGCCTCGCCATGCACCTCAATTTTCCAATCTTCCAACTCCACCAACTACCGATCCTTCTGCCTGCCCAACATCTCAACTGCAGGCAGAAGCAACTACTAGCACTCATCATCAAGAGGAACCATCTCATTTGCGGCATGCCTCTCCTCCACTGCCGTTTGTTGATTTAAATTTGGATGATTTGCTGCGGTACTTGGATGATGGGATCCTTCACCCCATCATGAGAGATCTGGATGAAATTCGGCGCAAGGTGATGGAAAGTATCCAGCGGCAACAAAAGTTAGCTCAACAAGTTTCACAATTGGGTCAGCAAGTGACTCAGATGGCGCAGCAACAATCGGAGCTTCAGAGTTTTGTTCAACGCCAAGCTCGGCGTCAGGATGAACAATTCAGCACTTTGATGAATTGTATTTATGAAGTGTTCGTTCGACGCATCCCAGCGCCAGTTATTCCTCCTTCCCTTCAGCAACCCCTTCAGTTTAACGATCCAACTCCTCCCCCTGCAGACAACAATGACAACGCCCCGGGGAGAACTTAA

Protein sequence

MPFQLPIADLNEESKEVSPLSSPHLELTFSPPQLSTFREATPPPPPPPVEPPTLTLDPEESAPFQFSPPRHAPQFSNLPTPPTTDPSACPTSQLQAEATTSTHHQEEPSHLRHASPPLPFVDLNLDDLLRYLDDGILHPIMRDLDEIRRKVMESIQRQQKLAQQVSQLGQQVTQMAQQQSELQSFVQRQARRQDEQFSTLMNCIYEVFVRRIPAPVIPPSLQQPLQFNDPTPPPADNNDNAPGRT

Homology

[Close]

BLAST of Cla007958 vs. Swiss-Prot
Match: AGP9_ARATH (Classical arabinogalactan protein 9 OS=Arabidopsis thaliana GN=AGP9 PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-06
Identity = 39/108 (36.11%), Postives = 48/108 (44.44%), Query Frame = 1


Query: 19  PLSSPHLELTFSPPQLSTF-REATPPPP---PPPVEPPTLTLDPEESAPFQFSPPRHAPQ 78
           P+S+P   +T SPP ++T    A PPPP   PPP  PP  T  P  S P    PP  +P 
Sbjct: 47  PVSAPP-PVTTSPPPVTTAPPPANPPPPVSSPPPASPPPATPPPVASPP----PPVASPP 106

Query: 79  FSNLPTPPTTDPSACPTSQLQAEATTSTHHQEEPSHLRHASPPLPFVD 123
            +  P   T  P+   +   Q  A   T   + PS    +SPPLP  D
Sbjct: 107 PATPPPVATPPPAPLASPPAQVPAPAPTTKPDSPSPSPSSSPPLPSSD 149

[Close]

BLAST of Cla007958 vs. TrEMBL
Match: M7ZBH0_TRIUA (Uncharacterized protein OS=Triticum urartu GN=TRIUR3_03491 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.4e-06
Identity = 44/125 (35.20%), Postives = 56/125 (44.80%), Query Frame = 1


Query: 2   PFQLPIADLNEESKEVSPLSSPHLELTFSPPQLSTFREATPPP---PPPPVEPPTLTLDP 61
           P   P+   NE+    SPLSSP  +   +PP      ++ PPP    PPP+ P T    P
Sbjct: 205 PTAPPVEPTNEQPPPSSPLSSPPPQAPATPPPYQPSDQSPPPPSSSSPPPLSPAT-PQTP 264

Query: 62  EESAPFQFSPPRHAPQFSNLPTPPTTDPS---ACPTSQLQAEATTSTHHQEEPSHLRHA- 120
           + S P   SPP + P     P PP   PS     P+S L +  T   + Q  PS L    
Sbjct: 265 QSSPP--VSPPTYVPSDQPPPPPPLNPPSIPPPPPSSPLVSPPTYEPNDQPPPSPLNPPY 324

[Close]

BLAST of Cla007958 vs. TrEMBL
Match: M7ZBH0_TRIUA (Uncharacterized protein OS=Triticum urartu GN=TRIUR3_03491 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.9e-02
Identity = 35/105 (33.33%), Postives = 45/105 (42.86%), Query Frame = 1


Query: 30  SPPQLSTFREATPP-------PPPPPVEPPTLTLDPEES-------APFQFSPPRHAPQF 89
           SPP  S+    TPP       PPPPP+ PP++   P  S       AP    PP  +P F
Sbjct: 550 SPPPPSSSPPVTPPTYEPNDQPPPPPLNPPSIHPPPPSSPPETSPMAPISEQPPPASPTF 609

Query: 90  SN-LPTPPTTDPSACPTSQLQAEATTSTHHQEEPSHLRHASPPLP 120
           S+  P  PTT P   P  Q     ++S+     P  L   +P  P
Sbjct: 610 SSPPPIAPTTPPPYQPIDQSPPPQSSSS-----PPPLAPPTPQTP 649

HSP 2 Score: 40.0 bits (92), Expect = 4.7e+00
Identity = 28/97 (28.87%), Postives = 38/97 (39.18%), Query Frame = 1


Query: 30  SPPQLSTFREATPPPPPPPVEPPTLTLDPEES-------APFQFSPPRHAPQFSNLPTPP 89
           +PP      E    PPPP + PP++   P  S        P    PP  +P  S  P  P
Sbjct: 172 TPPVTPPTYEPNNQPPPPSLNPPSIPPSPPSSPPTAPPVEPTNEQPPPSSPLSSPPPQAP 231

Query: 90  TTDPSACPTSQLQAEATTSTHHQEEPSHLRHASPPLP 120
            T P   P+ Q     ++S+     P  L  A+P  P
Sbjct: 232 ATPPPYQPSDQSPPPPSSSS-----PPPLSPATPQTP 263

[Close]

BLAST of Cla007958 vs. NCBI nr
Match: gi|474151785|gb|EMS56991.1| (hypothetical protein TRIUR3_03491 [Triticum urartu])

HSP 1 Score: 60.1 bits (144), Expect = 6.3e-06
Identity = 44/125 (35.20%), Postives = 56/125 (44.80%), Query Frame = 1


Query: 2   PFQLPIADLNEESKEVSPLSSPHLELTFSPPQLSTFREATPPP---PPPPVEPPTLTLDP 61
           P   P+   NE+    SPLSSP  +   +PP      ++ PPP    PPP+ P T    P
Sbjct: 205 PTAPPVEPTNEQPPPSSPLSSPPPQAPATPPPYQPSDQSPPPPSSSSPPPLSPAT-PQTP 264

Query: 62  EESAPFQFSPPRHAPQFSNLPTPPTTDPS---ACPTSQLQAEATTSTHHQEEPSHLRHA- 120
           + S P   SPP + P     P PP   PS     P+S L +  T   + Q  PS L    
Sbjct: 265 QSSPP--VSPPTYVPSDQPPPPPPLNPPSIPPPPPSSPLVSPPTYEPNDQPPPSPLNPPY 324

[Close]

BLAST of Cla007958 vs. NCBI nr
Match: gi|474151785|gb|EMS56991.1| (hypothetical protein TRIUR3_03491 [Triticum urartu])

HSP 1 Score: 47.0 bits (110), Expect = 5.6e-02
Identity = 35/105 (33.33%), Postives = 45/105 (42.86%), Query Frame = 1


Query: 30  SPPQLSTFREATPP-------PPPPPVEPPTLTLDPEES-------APFQFSPPRHAPQF 89
           SPP  S+    TPP       PPPPP+ PP++   P  S       AP    PP  +P F
Sbjct: 550 SPPPPSSSPPVTPPTYEPNDQPPPPPLNPPSIHPPPPSSPPETSPMAPISEQPPPASPTF 609

Query: 90  SN-LPTPPTTDPSACPTSQLQAEATTSTHHQEEPSHLRHASPPLP 120
           S+  P  PTT P   P  Q     ++S+     P  L   +P  P
Sbjct: 610 SSPPPIAPTTPPPYQPIDQSPPPQSSSS-----PPPLAPPTPQTP 649

HSP 2 Score: 40.0 bits (92), Expect = 6.8e+00
Identity = 28/97 (28.87%), Postives = 38/97 (39.18%), Query Frame = 1


Query: 30  SPPQLSTFREATPPPPPPPVEPPTLTLDPEES-------APFQFSPPRHAPQFSNLPTPP 89
           +PP      E    PPPP + PP++   P  S        P    PP  +P  S  P  P
Sbjct: 172 TPPVTPPTYEPNNQPPPPSLNPPSIPPSPPSSPPTAPPVEPTNEQPPPSSPLSSPPPQAP 231

Query: 90  TTDPSACPTSQLQAEATTSTHHQEEPSHLRHASPPLP 120
            T P   P+ Q     ++S+     P  L  A+P  P
Sbjct: 232 ATPPPYQPSDQSPPPPSSSS-----PPPLSPATPQTP 263

The following BLAST results are available for this feature:

BLAST of Cla007958 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGP9_ARATH	1.3e-06	36.11	Classical arabinogalactan protein 9 OS=Arabidopsis thaliana GN=AGP9 PE=1 SV=2	[more]

BLAST of Cla007958 vs. TrEMBL


Match Name	E-value	Identity	Description
M7ZBH0_TRIUA	4.4e-06	35.20	Uncharacterized protein OS=Triticum urartu GN=TRIUR3_03491 PE=4 SV=1	[more]
M7ZBH0_TRIUA	3.9e-02	33.33	Uncharacterized protein OS=Triticum urartu GN=TRIUR3_03491 PE=4 SV=1	[more]

BLAST of Cla007958 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|474151785\|gb\|EMS56991.1\|	6.3e-06	35.20	hypothetical protein TRIUR3_03491 [Triticum urartu]	[more]
gi\|474151785\|gb\|EMS56991.1\|	5.6e-02	33.33	hypothetical protein TRIUR3_03491 [Triticum urartu]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007958	Cla007958.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 144..164 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007958	Cucurbita moschata (Rifu)	cmowmB252
Cla007958	Cucurbita moschata (Rifu)	cmowmB664
Cla007958	Wild cucumber (PI 183967)	cpiwmB474
Cla007958	Melon (DHL92) v3.5.1	mewmB310
Cla007958	Watermelon (Charleston Gray)	wcgwmB402
Cla007958	Cucumber (Chinese Long) v2	cuwmB459
Cla007958	Cucurbita pepo (Zucchini)	cpewmB172
Cla007958	Bottle gourd (USVL1VR-Ls)	lsiwmB468
Cla007958	Cucumber (Gy14) v2	cgybwmB431
Cla007958	Melon (DHL92) v3.6.1	medwmB304
Cla007958	Cucumber (Chinese Long) v3	cucwmB484
Cla007958	Watermelon (97103) v2	wmwmbB102
Cla007958	Wax gourd	wgowmB318
Cla007958	Cucumber (Gy14) v1	cgywmB659
Cla007958	Cucurbita maxima (Rimu)	cmawmB262
Cla007958	Cucurbita maxima (Rimu)	cmawmB669