Cla007931 (gene) Watermelon (97103) v1

Overview
NameCla007931
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr11 : 8883866 .. 8884418 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGATCATGTGATAATAATTTTTTGGAAGGGATCCCAAGTGCTTCAGGACTCCCTAGTGCAATTATAACGTTGGTATGTATGCTTTTTGTTCAAGTTATCTTTGTTCTTTTCTTTATCAGGTAATTTATTTATTTATTTATTTATTTATTTTTAGCAGTCTCCCTTGAGTCCGCACCTTCAAGAGCTTGCGGAGCCGAACAGTGAAGAATCTTTGATGGGGCCTTATAATTTGGACTCATCCATGGACAAGGTTGGTACTTCTACATTACCAGTAGCTGAAACAATTGAACCACCCTTACGACCTCGTGCTATTTTAGAGGACATTCGACGCGGCAAAATGAAAGTAGGTAGTGAAAGCGTTGGAGTTTTAACCTCTCCACTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCATAGAGAAAATCATGCCTCCTCCTGGTCCGCTAAGAATTTCGGAACTGACTCAACGCGTCTGTAAAAAAAAAAATGTTGGGAATCCCGAGGCTTCTCTATACTGCGGCGATGTAGTAGTTTCGAATTTTTATTGA

mRNA sequence

ATGAAAGGATCATGTGATAATAATTTTTTGGAAGGGATCCCAAGTGCTTCAGGACTCCCTAGTGCAATTATAACGTTGTCTCCCTTGAGTCCGCACCTTCAAGAGCTTGCGGAGCCGAACAGTGAAGAATCTTTGATGGGGCCTTATAATTTGGACTCATCCATGGACAAGGTTGGTACTTCTACATTACCAGTAGCTGAAACAATTGAACCACCCTTACGACCTCGTGCTATTTTAGAGGACATTCGACGCGGCAAAATGAAAGTAGGTAGTGAAAGCGTTGGAGTTTTAACCTCTCCACTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCATAGAGAAAATCATGCCTCCTCCTGGTCCGCTAAGAATTTCGGAACTGACTCAACGCGTCTGTAAAAAAAAAAATGTTGGGAATCCCGAGGCTTCTCTATACTGCGGCGATGTAGTAGTTTCGAATTTTTATTGA

Coding sequence (CDS)

ATGAAAGGATCATGTGATAATAATTTTTTGGAAGGGATCCCAAGTGCTTCAGGACTCCCTAGTGCAATTATAACGTTGTCTCCCTTGAGTCCGCACCTTCAAGAGCTTGCGGAGCCGAACAGTGAAGAATCTTTGATGGGGCCTTATAATTTGGACTCATCCATGGACAAGGTTGGTACTTCTACATTACCAGTAGCTGAAACAATTGAACCACCCTTACGACCTCGTGCTATTTTAGAGGACATTCGACGCGGCAAAATGAAAGTAGGTAGTGAAAGCGTTGGAGTTTTAACCTCTCCACTTGAAGAAGTTGGTTGTTCTAAAGCCCTCTTCATAGAGAAAATCATGCCTCCTCCTGGTCCGCTAAGAATTTCGGAACTGACTCAACGCGTCTGTAAAAAAAAAAATGTTGGGAATCCCGAGGCTTCTCTATACTGCGGCGATGTAGTAGTTTCGAATTTTTATTGA

Protein sequence

MKGSCDNNFLEGIPSASGLPSAIITLSPLSPHLQELAEPNSEESLMGPYNLDSSMDKVGTSTLPVAETIEPPLRPRAILEDIRRGKMKVGSESVGVLTSPLEEVGCSKALFIEKIMPPPGPLRISELTQRVCKKKNVGNPEASLYCGDVVVSNFY
Homology
[Close]
BLAST of Cla007931 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.1e-16
Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 1 

Query: 36  LAEPNSEESLMGPYNLDSSMDKVGTSTLPVAETIEPPLRPRAILEDIRRGKMKVGSESVG 95
           L EP+S+ESL GP+ +DS+ ++VGTS  PV +  E  L P A+ E+IRRGKM VG + + 
Sbjct: 388 LIEPDSDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGGKDLE 447

Query: 96  VLTSPLEEVGCSKALFIEKIMPPPGPLRISELTQRVCKKKNVGNPEASLYCGDVVVSNFY 155
             +S  +E  C KA F+ K+     PL+ SEL      K+ + NPE S + G+ VVSNF+
Sbjct: 448 SHSS--KEGVCPKA-FLPKVSSTHAPLKFSELPLGASNKQTMRNPEPSQWVGEKVVSNFF 504

[Close]
BLAST of Cla007931 vs. TrEMBL
Match: A0A0A0L2B5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G444640 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.5e-09
Identity = 42/115 (36.52%), Postives = 65/115 (56.52%), Query Frame = 1 

Query: 41  SEESLMGPYNLDSSMDKVGTSTLPVAETIEPPLRPRAILEDIRRGKMKVGSESVGVLTSP 100
           S+E L GP+  D+++++V     P A+++E  LRP A+LE+IR+GKMKVG + +    +P
Sbjct: 5   SDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDI---KNP 64

Query: 101 LEEVGCSKALFIEKIMPPPGPLRISELTQRVCKKKNVGNPEASLYCGDVVVSNFY 156
               G    +   K      PL+I E       K+ V +PE S + G+ VVSNF+
Sbjct: 65  PSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 116

[Close]
BLAST of Cla007931 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 92.4 bits (228), Expect = 7.3e-16
Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 1 

Query: 36  LAEPNSEESLMGPYNLDSSMDKVGTSTLPVAETIEPPLRPRAILEDIRRGKMKVGSESVG 95
           L EP+S+ESL GP+ +DS+ ++VGTS  PV +  E  L P A+ E+IRRGKM VG + + 
Sbjct: 388 LIEPDSDESLTGPHVVDSAFEEVGTSKTPVNKPAEQSLCPSALFEEIRRGKMTVGGKDLE 447

Query: 96  VLTSPLEEVGCSKALFIEKIMPPPGPLRISELTQRVCKKKNVGNPEASLYCGDVVVSNFY 155
             +S  +E  C KA F+ K+     PL+ SEL      K+ + NPE S + G+ VVSNF+
Sbjct: 448 SHSS--KEGVCPKA-FLPKVSSTHAPLKFSELPLGASNKQTMRNPEPSQWVGEKVVSNFF 504

[Close]
BLAST of Cla007931 vs. NCBI nr
Match: gi|700199594|gb|KGN54752.1| (hypothetical protein Csa_4G444640 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 5.1e-09
Identity = 42/115 (36.52%), Postives = 65/115 (56.52%), Query Frame = 1 

Query: 41  SEESLMGPYNLDSSMDKVGTSTLPVAETIEPPLRPRAILEDIRRGKMKVGSESVGVLTSP 100
           S+E L GP+  D+++++V     P A+++E  LRP A+LE+IR+GKMKVG + +    +P
Sbjct: 5   SDELLTGPHMADTTIEEVCILKTPAAKSVEVSLRPSALLEEIRQGKMKVGGKDI---KNP 64

Query: 101 LEEVGCSKALFIEKIMPPPGPLRISELTQRVCKKKNVGNPEASLYCGDVVVSNFY 156
               G    +   K      PL+I E       K+ V +PE S + G+ VVSNF+
Sbjct: 65  PSRGGVCPIVPSTKATSMHTPLKIYEPPLGTSMKQAVEHPEPSQWVGENVVSNFF 116

The following BLAST results are available for this feature:
BLAST of Cla007931 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB9_CUCME5.1e-1644.17Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0L2B5_CUCSA3.5e-0936.52Uncharacterized protein OS=Cucumis sativus GN=Csa_4G444640 PE=4 SV=1[more]
BLAST of Cla007931 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136292|gb|ADN34118.1|7.3e-1644.17hypothetical protein [Cucumis melo subsp. melo][more]
gi|700199594|gb|KGN54752.1|5.1e-0936.52hypothetical protein Csa_4G444640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007931Cla007931.1mRNA