Cla007930 (gene) Watermelon (97103) v1

Overview
NameCla007930
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr11 : 8884711 .. 8885010 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGGAGAAGATAAAACCATTCCAGAGCGAGTTGCGCAGTTAGCCTCAGAAAAGGAGGAATTAGAATTTAGACTTCAAGAGGTCAAAACCGAATATGGGAAACTTTTGAGTTTGTGTGATGAGAAGAAGGAGGCCTTAGACAAAAGGGAACTTGAAGTCGCCCAGATGCAAGAAGAAATCAATACTCTTGAGAGCACTCCTACTATAACTGATGAAGGTGTCGAGGCTTTTGCTACAGTTCGAGACAACATGGAAACTGCACGCGAAGAGTTGAAGAACTTCAAGTGGAGGCTTTGA

mRNA sequence

ATGCGAGGAGAAGATAAAACCATTCCAGAGCGAGTTGCGCAGTTAGCCTCAGAAAAGGAGGAATTAGAATTTAGACTTCAAGAGGTCAAAACCGAATATGGGAAACTTTTGAGTTTGTGTGATGAGAAGAAGGAGGCCTTAGACAAAAGGGAACTTGAAGTCGCCCAGATGCAAGAAGAAATCAATACTCTTGAGAGCACTCCTACTATAACTGATGAAGGTGTCGAGGCTTTTGCTACAGTTCGAGACAACATGGAAACTGCACGCGAAGAGTTGAAGAACTTCAAGTGGAGGCTTTGA

Coding sequence (CDS)

ATGCGAGGAGAAGATAAAACCATTCCAGAGCGAGTTGCGCAGTTAGCCTCAGAAAAGGAGGAATTAGAATTTAGACTTCAAGAGGTCAAAACCGAATATGGGAAACTTTTGAGTTTGTGTGATGAGAAGAAGGAGGCCTTAGACAAAAGGGAACTTGAAGTCGCCCAGATGCAAGAAGAAATCAATACTCTTGAGAGCACTCCTACTATAACTGATGAAGGTGTCGAGGCTTTTGCTACAGTTCGAGACAACATGGAAACTGCACGCGAAGAGTTGAAGAACTTCAAGTGGAGGCTTTGA

Protein sequence

MRGEDKTIPERVAQLASEKEELEFRLQEVKTEYGKLLSLCDEKKEALDKRELEVAQMQEEINTLESTPTITDEGVEAFATVRDNMETAREELKNFKWRL
Homology
[Close]
BLAST of Cla007930 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-22
Identity = 56/99 (56.57%), Postives = 74/99 (74.75%), Query Frame = 1 

Query: 1   MRGEDKTIPERVAQLASEKEELEFRLQEVKTEYGKLLSLCDEKKEALDKRELEVAQMQEE 60
           +RG+ K I ER A+L+ E++ELE RL  +  E+ +L  L  EK EA+D++ELEV  +Q+E
Sbjct: 603 LRGDVKVIQERAAELSLERKELEKRLWSINAEFEQLSILSCEKAEAIDQQELEVFMLQDE 662

Query: 61  INTLESTPTITDEGVEAFATVRDNMETAREELKNFKWRL 100
           +NTLESTP IT E ++A ATVR +ME AREE KNFKWRL
Sbjct: 663 VNTLESTPAITKEAIKALATVRQSMEVAREEFKNFKWRL 701

[Close]
BLAST of Cla007930 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-22
Identity = 56/99 (56.57%), Postives = 74/99 (74.75%), Query Frame = 1 

Query: 1   MRGEDKTIPERVAQLASEKEELEFRLQEVKTEYGKLLSLCDEKKEALDKRELEVAQMQEE 60
           +RG+ K I ER A+L+ E++ELE RL  +  E+ +L  L  EK EA+D++ELEV  +Q+E
Sbjct: 603 LRGDVKVIQERAAELSLERKELEKRLWSINAEFEQLSILSCEKAEAIDQQELEVFMLQDE 662

Query: 61  INTLESTPTITDEGVEAFATVRDNMETAREELKNFKWRL 100
           +NTLESTP IT E ++A ATVR +ME AREE KNFKWRL
Sbjct: 663 VNTLESTPAITKEAIKALATVRQSMEVAREEFKNFKWRL 701

The following BLAST results are available for this feature:
BLAST of Cla007930 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB9_CUCME1.4e-2256.57Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of Cla007930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136292|gb|ADN34118.1|2.0e-2256.57hypothetical protein [Cucumis melo subsp. melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007930Cla007930.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 40..67
score: -coord: 12..32
scor