Cla007916 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007916
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Retrotransposon protein (AHRD V1 -- E5GBB2_CUCME)
Location	Chr11 : 9256634 .. 9257118 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGAGCGCAAATGTATTGACTGTGACGGAGATATTTGATGCGTGGGTCAAGGTAATTTTCTTATTTCTTTTATTTATGTTTTTCTGTTTTAAATATGTCTTAGCCATAACACATTTCACCTTTGACAGAGTCATCCGAGTGCAAAAGGACTGCGACATAAGTCATTTCCGTTCTATGACGACTTGGCCATTGCATTCGGCAAAGATAGAGCCACAGGAAGTTGTGCAACTACCACTGTAGAGGTCGGATCTGAACCTGTTGTGGACGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCGGACTTTGAGAACTTCTATATTCCTATCCACCTTTTGTCAACTCTCCCACATCAGAGGACACTCCAACTACCCCCGACGATAGAGGATTTGCAAGTAGCATGCCATCAAGAAGTAGGAGGTCCCGAAGTTCCTCGATTGGAGAGTACAGCGACGTGGTTCGGGAGGGATTCCAACTTTTGA

mRNA sequence

ATGCGGAGCGCAAATGTATTGACTGTGACGGAGATATTTGATGCGTGGGTCAAGAGTCATCCGAGTGCAAAAGGACTGCGACATAAGTCATTTCCGTTCTATGACGACTTGGCCATTGCATTCGGCAAAGATAGAGCCACAGGAAGTTGTGCAACTACCACTGTAGAGGTCGGATCTGAACCTGTTGTGGACGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCGGACTTTGAGAACTTCTATATTCCTATCCACCTTTTGTCAACTCTCCCACATCAGAGGACACTCCAACTACCCCCGACGATAGAGGATTTGCAAGTAGCATGCCATCAAGAAGTAGGAGGTCCCGAAGTTCCTCGATTGGAGAGTACAGCGACGTGGTTCGGGAGGGATTCCAACTTTTGA

Coding sequence (CDS)

ATGCGGAGCGCAAATGTATTGACTGTGACGGAGATATTTGATGCGTGGGTCAAGAGTCATCCGAGTGCAAAAGGACTGCGACATAAGTCATTTCCGTTCTATGACGACTTGGCCATTGCATTCGGCAAAGATAGAGCCACAGGAAGTTGTGCAACTACCACTGTAGAGGTCGGATCTGAACCTGTTGTGGACGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCGGACTTTGAGAACTTCTATATTCCTATCCACCTTTTGTCAACTCTCCCACATCAGAGGACACTCCAACTACCCCCGACGATAGAGGATTTGCAAGTAGCATGCCATCAAGAAGTAGGAGGTCCCGAAGTTCCTCGATTGGAGAGTACAGCGACGTGGTTCGGGAGGGATTCCAACTTTTGA

Protein sequence

MRSANVLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSEPVVDEENEDILNNQSPDFENFYIPIHLLSTLPHQRTLQLPPTIEDLQVACHQEVGGPEVPRLESTATWFGRDSNF

Homology

[Close]

BLAST of Cla007916 vs. TrEMBL
Match: A0A161WV79_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011368 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-10
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1


Query: 12  IFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSEPVVDEEN 68
           IF+ W+KSHP+AKGLR+KSFP+YD+L+  FGKDRA G C  +  +   E   +EEN
Sbjct: 47  IFEDWLKSHPNAKGLRNKSFPYYDELSQVFGKDRANGECVESPADAAEEIANEEEN 102

[Close]

BLAST of Cla007916 vs. TrEMBL
Match: A0A161XV48_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-10
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1


Query: 12  IFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSEPVVDEEN 68
           IF+ W+KSHP+AKGLR+KSFP+YD+L+  FGKDRA G C  +  +   E   +EEN
Sbjct: 116 IFEDWLKSHPNAKGLRNKSFPYYDELSQVFGKDRANGECVESPADAVEEIANEEEN 171

[Close]

BLAST of Cla007916 vs. TrEMBL
Match: A0A162AHN3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_009785 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-09
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1


Query: 12  IFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSEPVVDEEN 68
           IF+ W+KSHP+AKGLR+KSFPFYD+LA  FGKDRA G    +  +   E   DEE+
Sbjct: 118 IFEEWLKSHPNAKGLRNKSFPFYDELAQVFGKDRANGEGVESPADAVEEIANDEES 173

[Close]

BLAST of Cla007916 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 6   VLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGS 60
           ++   E+FD WV+S P+AKGL +  FP+YD+L   FG+DRATG  A T  +VGS
Sbjct: 418 IVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGS 471

[Close]

BLAST of Cla007916 vs. TrEMBL
Match: A0A0K9RVV5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_028730 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-07
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 1


Query: 12  IFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSEPVVDEENEDI 71
           ++D W+KSH +A GLR+K FPF+DDL   FGKDR  G+ AT   +V  E  +DEE +++
Sbjct: 119 VWDEWIKSHKNAAGLRNKPFPFFDDLGKIFGKDRDVGNEATNVYDVLEE--MDEEEQEV 175

[Close]

BLAST of Cla007916 vs. NCBI nr
Match: gi|659111565|ref|XP_008455793.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-12
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 1


Query: 6   VLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSE----- 65
           ++   ++FD+WVKSHP+ KGL HKSFP+YDDL   FGKDRATG+ + T V+VGS      
Sbjct: 50  IIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMF 109

Query: 66  ----PVVDEENEDI 71
               P+ D  +EDI
Sbjct: 110 NDTIPLGDSHDEDI 123

[Close]

BLAST of Cla007916 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 5.6e-12
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 1


Query: 6   VLTVTEIFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSE----- 65
           ++   ++FD+W+KSHP+AKGL HKSFP+YDDL+  FGKDRATG+ + T   VGS      
Sbjct: 101 IIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMF 160

Query: 66  ----PVVDEENEDI 71
               P+ D  +EDI
Sbjct: 161 NDTIPLGDSHDEDI 174

[Close]

BLAST of Cla007916 vs. NCBI nr
Match: gi|1021044833|gb|KZN02614.1| (hypothetical protein DCAR_011368 [Daucus carota subsp. sativus])

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1


Query: 12  IFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSEPVVDEEN 68
           IF+ W+KSHP+AKGLR+KSFP+YD+L+  FGKDRA G C  +  +   E   +EEN
Sbjct: 47  IFEDWLKSHPNAKGLRNKSFPYYDELSQVFGKDRANGECVESPADAAEEIANEEEN 102

[Close]

BLAST of Cla007916 vs. NCBI nr
Match: gi|1021037873|gb|KZM95656.1| (hypothetical protein DCAR_018898 [Daucus carota subsp. sativus])

HSP 1 Score: 72.4 bits (176), Expect = 6.8e-10
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1


Query: 12  IFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSEPVVDEEN 68
           IF+ W+KSHP+AKGLR+KSFP+YD+L+  FGKDRA G C  +  +   E   +EEN
Sbjct: 116 IFEDWLKSHPNAKGLRNKSFPYYDELSQVFGKDRANGECVESPADAVEEIANEEEN 171

[Close]

BLAST of Cla007916 vs. NCBI nr
Match: gi|659071532|ref|XP_008460440.1| (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1


Query: 12 IFDAWVKSHPSAKGLRHKSFPFYDDLAIAFGKDRATGSCATTTVEVGSEPVVDEENEDIL 71
          +FD WVK HP+A+GL +KSFP++ DL I FG+DRATG    T +E+G +   D E +D+ 
Sbjct: 23 VFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKTPIEMGLQIARDTEEDDMD 82

Query: 72 NNQSPDFENFYIP 85
           N     E+F IP
Sbjct: 83 IN----LEDFDIP 91

The following BLAST results are available for this feature:

BLAST of Cla007916 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A161WV79_DAUCA	2.1e-10	55.36	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011368 PE=4 SV=1	[more]
A0A161XV48_DAUCA	4.7e-10	55.36	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018898 PE=4 SV=1	[more]
A0A162AHN3_DAUCA	2.4e-09	57.14	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_009785 PE=4 SV=1	[more]
E5GBB2_CUCME	1.3e-07	51.85	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0K9RVV5_SPIOL	2.9e-07	49.15	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_028730 PE=4 SV=1	[more]

BLAST of Cla007916 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111565\|ref\|XP_008455793.1\|	1.9e-12	51.35	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|659082641\|ref\|XP_008441954.1\|	5.6e-12	50.00	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|1021044833\|gb\|KZN02614.1\|	3.1e-10	55.36	hypothetical protein DCAR_011368 [Daucus carota subsp. sativus]	[more]
gi\|1021037873\|gb\|KZM95656.1\|	6.8e-10	55.36	hypothetical protein DCAR_018898 [Daucus carota subsp. sativus]	[more]
gi\|659071532\|ref\|XP_008460440.1\|	1.5e-09	47.95	PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007916	Cla007916.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007916	Cla97C11G216800	Watermelon (97103) v2	wmwmbB364

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007916	Cucurbita moschata (Rifu)	cmowmB160
Cla007916	Cucurbita moschata (Rifu)	cmowmB760
Cla007916	Wild cucumber (PI 183967)	cpiwmB158
Cla007916	Melon (DHL92) v3.5.1	mewmB426
Cla007916	Watermelon (Charleston Gray)	wcgwmB109
Cla007916	Cucumber (Chinese Long) v2	cuwmB156
Cla007916	Cucurbita pepo (Zucchini)	cpewmB118
Cla007916	Cucurbita pepo (Zucchini)	cpewmB811
Cla007916	Bottle gourd (USVL1VR-Ls)	lsiwmB110
Cla007916	Cucumber (Gy14) v2	cgybwmB148
Cla007916	Melon (DHL92) v3.6.1	medwmB415
Cla007916	Silver-seed gourd	carwmB0155
Cla007916	Silver-seed gourd	carwmB0715
Cla007916	Cucumber (Chinese Long) v3	cucwmB167
Cla007916	Wax gourd	wgowmB148
Cla007916	Cucumber (Gy14) v1	cgywmB342
Cla007916	Cucurbita maxima (Rimu)	cmawmB173
Cla007916	Cucurbita maxima (Rimu)	cmawmB767