Cla007891 (gene) Watermelon (97103) v1

Overview
NameCla007891
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr11 : 9864265 .. 9864513 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGTGATCGGAATAATAATAGAGGAAGGAACACCTCCTCCTCTTCAAAGGGTAAAAGGCCAACCTCTTCAAGCTCGACACCCACTCCAATGAATGCTGATCAATACGCAATGGAATTAGGATTTACCACAGTAACCTGTTCAAGAGCAAGATCCTCCAACATTCGGATAGGATCTCCCATGGAGTCATCAACTCCACCTCCAAGGCCTTCGGCCAACCTTGTCCACCCTTCTGGTGGGGACTAG

mRNA sequence

ATGAGTAGTGATCGGAATAATAATAGAGGAAGGAACACCTCCTCCTCTTCAAAGGGTAAAAGGCCAACCTCTTCAAGCTCGACACCCACTCCAATGAATGCTGATCAATACGCAATGGAATTAGGATTTACCACAGTAACCTGTTCAAGAGCAAGATCCTCCAACATTCGGATAGGATCTCCCATGGAGTCATCAACTCCACCTCCAAGGCCTTCGGCCAACCTTGTCCACCCTTCTGGTGGGGACTAG

Coding sequence (CDS)

ATGAGTAGTGATCGGAATAATAATAGAGGAAGGAACACCTCCTCCTCTTCAAAGGGTAAAAGGCCAACCTCTTCAAGCTCGACACCCACTCCAATGAATGCTGATCAATACGCAATGGAATTAGGATTTACCACAGTAACCTGTTCAAGAGCAAGATCCTCCAACATTCGGATAGGATCTCCCATGGAGTCATCAACTCCACCTCCAAGGCCTTCGGCCAACCTTGTCCACCCTTCTGGTGGGGACTAG

Protein sequence

MSSDRNNNRGRNTSSSSKGKRPTSSSSTPTPMNADQYAMELGFTTVTCSRARSSNIRIGSPMESSTPPPRPSANLVHPSGGD
Homology
[Close]
BLAST of Cla007891 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.9e-19
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 1  MSSDRNNNRGRNTSSSSKGKRPTSSS-STPTPMNADQYAMELGFTTVTCSRARSSNIRIG 60
          MSS++ + RGR  S+SSKG RP+SSS S P+PM+A QY M+LGFT VT SR+R S+I IG
Sbjct: 1  MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61 SPMESSTPPPRPSANLVHPSGG 82
          SP ESST PPRPS NL+ PSGG
Sbjct: 61 SPTESST-PPRPSVNLIRPSGG 81

[Close]
BLAST of Cla007891 vs. TrEMBL
Match: A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.1e-17
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 1  MSSDRNNNRGRNTSSSSKGKRPTSSSS-TPTPMNADQYAMELGFTTVTCSRARSSNIRIG 60
          MS +R + RGR  S SS+G  P+S S+  P+PM+ADQYAM LGFTTVT SRARSS+I+IG
Sbjct: 3  MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62

Query: 61 SPMESSTPPPRPSANLVHPSG 81
               S+ PPRPS NL+ PSG
Sbjct: 63 YNSTESSTPPRPSTNLIRPSG 83

[Close]
BLAST of Cla007891 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 1 

Query: 1  MSSDRNNNRGRNTSSSSKGKRPTSSSS-TPTPMNADQYAMELGFTTVTCSRARSSNIRIG 60
          MSS++ + RGR  S+SSKG RP+SSS+  P+PM+ADQYAM+L FTT+T SR+RSS IRIG
Sbjct: 1  MSSEKGSARGRTNSTSSKGNRPSSSSNFAPSPMSADQYAMDLEFTTITRSRSRSSGIRIG 60

Query: 61 SPMESSTPPPRPSANLVHPSGG 82
          SP ESST PPRPSANL+  S G
Sbjct: 61 SPTESST-PPRPSANLIRLSDG 81

[Close]
BLAST of Cla007891 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 1 

Query: 1  MSSDRNNNRGRNTSSSSKGKRPTSSS-STPTPMNADQYAMELGFTTVTCSRARSSNIRIG 60
          MSS++ + RGR  S+SSKG RP+SSS S P+PM+A QY M+LGFT VT SR+R S+I IG
Sbjct: 1  MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 61 SPMESSTPPPRPSANLVHPSGG 82
          SP ESST PPRPS NL+ PSGG
Sbjct: 61 SPTESST-PPRPSVNLIRPSGG 81

[Close]
BLAST of Cla007891 vs. NCBI nr
Match: gi|700189415|gb|KGN44648.1| (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-16
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 1  MSSDRNNNRGRNTSSSSKGKRPTSSSS-TPTPMNADQYAMELGFTTVTCSRARSSNIRIG 60
          MS +R + RGR  S SS+G  P+S S+  P+PM+ADQYAM LGFTTVT SRARSS+I+IG
Sbjct: 3  MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62

Query: 61 SPMESSTPPPRPSANLVHPSG 81
               S+ PPRPS NL+ PSG
Sbjct: 63 YNSTESSTPPRPSTNLIRPSG 83

The following BLAST results are available for this feature:
BLAST of Cla007891 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCE6_CUCME9.9e-1965.85Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0K595_CUCSA7.1e-1760.49Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1[more]
BLAST of Cla007891 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659098578|ref|XP_008450208.1|1.3e-1967.07PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|307136323|gb|ADN34145.1|1.4e-1865.85hypothetical protein [Cucumis melo subsp. melo][more]
gi|700189415|gb|KGN44648.1|1.0e-1660.49hypothetical protein Csa_7G361530 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla007891Cla007891.1mRNA