Cla007875 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007875
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr11 : 10473452 .. 10476377 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCAGCTAACACAGATTAGATTGGATGCAGATCGGTGGGTTATTGAGTATAATGATCAAGACCAATGGATTGGGAAAAATGACACTAAAATGGTAAGTTACATTGGGACTTGTGTGAGGAACCACGTACCAATTTCATATGCTTCATGGAAAAACGTGCCATCAAAGCTGAAAGAAAAAAATTTTGTGAGCATTCAGGTAACTTGTATGCATTTAATGTTTAATTCAATAAAATTTGATGTATTTGAATTTACATATGTCTACATGTATGTTATTTTGTAATTTTCAGAAGTCTTTTGTGATAAACCCGAAATCTAAGAATGATATTTTGATAAAAGCTGGAATTGCATTTTGAAATTTTAAAAATAGTCTGAAGAGTAGGCACATTGACCCATATAAAGACATTCTAGAATGCTTGAAATTTCCTCCACTTGAGTATCCTTCTATCGATCTAGCTGATTGGAAATTTTTGTTAATCAAGCTCTATCAAACGACTTCTAGGTTAGTGTTATTAATTATTTTAGGTTAGTGTTCTTTTTGTGTATTGTAGGCGCGTAGCAATTTGTAGAAAGAGCGATGCAAACAATACAAATACAATCATATGTTGTGTTCACGCAAAGGTTATGCAAATTTGAGCGAGGAATTGGTAAGTTTTATGTGATAACAATTTATTATTTACAAAAATATATTATGTTGTGTTCATTAAACTTTATTTTACTCATATATACTTGTAGAAAAGACAAGGAAAATTGTCTCCAACAGCAGATCGAGCTACTGTTTAGAAACATGCTCAATTAAAAAAAAATGGAGAATTCTTAAATAAAGATGTCGAAGAGGTTGCAGGGAAAAATGTAAGTAATAATCTAATGATTGCTTCTCTATGGATGTATATAATACATTATATTTTGTTTGAAAATAAAATGTTTATCTATTAAAATTACTAGATGAACTGTCTAAAGATGGTGTAAACTATAAAGATTATTCATATGATATATTGACACAAGCGTTGGGAACACCTGAACACAGAGGACGGGTAAAAGGTGTAGGGGGGTTGATTACACCCCCATTCTACTTTCACAAACACATTCTAACAGAACCCACACAAACTCCACTGAATGACGATCCAGAGATAAATTTGGAAAAAAGAGAAAGTACTGATTTTGGATGAATATAATTTAATGGTTAAATGCATACATGAGTTAAATTCTCAAATGAAGGTCGAGGAAACACGTCCAGTTGCACATGATCAACAAATCATATCATCGCCCACCCATGAGGAAAAGATAGACCAGGTAAAAACTGTATTTACATGATTTATAAGTTGTTGTGTTGATGAATTATTTGACATTGATAATAGATTGACCGTTTGAAATGTACGTTTTAGGGGAGACCTTGTAGTCTTGCTGTTGGAAGTGTTGATAATATTGTGGCAGCAGACACTGTTTTTAAGAGACAATGGTCTACCGAAGTAGTTTATGGGGTAACACTTGGGGTGAATGAGGTGCGAGCTCATTGAAGTTGTAGATGACACCAACTCCACATTACCCATACTTGTTGTTGGAAGTGTTTATAGGGTTTCTAATGCAATTGGATCGTATGTTCCATGGTCAAAGCATGTGATGGTTGTAGAAAAAGTAGAAATGGTAAATTTTATTTATGAAAATATGAGTTATTGCATTTGCATGTTTCATTTTAAGTTTGACATTTTTTTGGATAGGCACATAAGAAACATTCTCGGGAGTTATCTGCTTTGAAAAGAAAGTAATCAAAGGCTGATGTGTCAAAATTGCCAACAACGATACGATTTGTGCTAAAATATGTGGAAGAGGAAATATTTGATGAATATCTGCATATCCCAATTGATGATCAGATTTTTGGGTATCACTTCAATTTCTACATGATGAAGAACAACAACAAACAATTATGTCAGATGGAAGAATTCACACTCTCAATTATAACGGGTTATATCGCTTATGTACAATTAACTAACCTGATCAATATTAATAATTTATTGTAACATTTCTAATATTAAATGTTTTTTTTTTTTAATGATCTTAGATGTTTGGTAGCAACCAACCCAAGTATAATAGAGGATTATGCATTCATTCACCCTGCGCAAATTTCAAGTGGCTGCCTGAGGAACAACGCTCTACATTCTTGTGCAACAAGTTGACCTCGACAAAGAATAAGTTGTTAATATGTCCGTATAATCCCGGGTAAGTTTAGAAAATGAGTATTTTAATAATTTTTTTATTGACAAGCATTGATTTATCTAACTTTATTTAGTTATGTCTTTTACGTAGATATCAATGGATGGTAGTTGCCATCAACTTACGGACTAATATAGTGTATTCAATTGACTATATGGGACTTGGTGTTCGTGAGGATGTGAAAACTATTGTCGATCCGTAAGTAAGTAAAAGTTATTTAACATTATGTGTATTCATTATGTTAACAATCCAATATCTTTATGCGTTTTTTTTGTTTAGGGGCATAAGAATGTTTTGTGCTCGAACAAGTACAGGATCTCGACATGTTATGTAGCTACCCGTTAAGGTAAGCATTTCAATTTCAATGTAATGATATTATACTTTAGATTACAAGATTTGGTTATTCTAATATGGGTTGAAATATATATGTGCATATATAGTGTGCTAAACAACCGGGTAGCACGAAGTGTGGGTACTATACTATGAAATTCATACACGACATAGTAACTCGGAGGAGCACAATAGTTACAGACATGGTATGCATTTGTTTAAACCATATTGTTTAACTATAATTTTTACACTTAATATAATTGTTTTTAATCAATATAATATTGTTTGTTTACTTGCAGTTGACGAGACAAACACCCTATAGTCAATTGGAATTAGACATGGTGAGAGTTGACTATTGTGACTTTATAGGACGTTACATTTGA

mRNA sequence

ATGATTCAGCTAACACAGATTAGATTGGATGCAGATCGGTGGGTTATTGAGTATAATGATCAAGACCAATGGATTGGGAAAAATGACACTAAAATGGTAAGTTACATTGGGACTTGTGTGAGGAACCACGTACCAATTTCATATGCTTCATGGAAAAACGTGCCATCAAAGCTGAAAGAAAAAAATTTTGTGAGCATTCAGGTCGAGGAAACACGTCCAGTTGCACATGATCAACAAATCATATCATCGCCCACCCATGAGGAAAAGATAGACCAGGGGAGACCTTGTAGTCTTGCTGTTGGAAGTGTTGATAATATTGTGGCAGCAGACACTGTTTTTAAGAGACAATGGTCTACCGAAGTAGTTTATGGGGTAACACTTGGGGTGAATGAGATGTTTGGTAGCAACCAACCCAAGTATAATAGAGGATTATGCATTCATTCACCCTGCGCAAATTTCAAGTGGCTGCCTGAGGAACAACGCTCTACATTCTTGTGCAACAAGTTGACCTCGACAAAGAATAAGTTGTTAATATGTCCGTATAATCCCGGATATCAATGGATGGTAGTTGCCATCAACTTACGGACTAATATAGTGTATTCAATTGACTATATGGGACTTGGTGTTCGTGAGGATGTGAAAACTATTGTCGATCCCACGAAGTGTGGGTACTATACTATGAAATTCATACACGACATAGTAACTCGGAGGAGCACAATAGTTACAGACATGTTGACGAGACAAACACCCTATAGTCAATTGGAATTAGACATGGTGAGAGTTGACTATTGTGACTTTATAGGACGTTACATTTGA

Coding sequence (CDS)

ATGATTCAGCTAACACAGATTAGATTGGATGCAGATCGGTGGGTTATTGAGTATAATGATCAAGACCAATGGATTGGGAAAAATGACACTAAAATGGTAAGTTACATTGGGACTTGTGTGAGGAACCACGTACCAATTTCATATGCTTCATGGAAAAACGTGCCATCAAAGCTGAAAGAAAAAAATTTTGTGAGCATTCAGGTCGAGGAAACACGTCCAGTTGCACATGATCAACAAATCATATCATCGCCCACCCATGAGGAAAAGATAGACCAGGGGAGACCTTGTAGTCTTGCTGTTGGAAGTGTTGATAATATTGTGGCAGCAGACACTGTTTTTAAGAGACAATGGTCTACCGAAGTAGTTTATGGGGTAACACTTGGGGTGAATGAGATGTTTGGTAGCAACCAACCCAAGTATAATAGAGGATTATGCATTCATTCACCCTGCGCAAATTTCAAGTGGCTGCCTGAGGAACAACGCTCTACATTCTTGTGCAACAAGTTGACCTCGACAAAGAATAAGTTGTTAATATGTCCGTATAATCCCGGATATCAATGGATGGTAGTTGCCATCAACTTACGGACTAATATAGTGTATTCAATTGACTATATGGGACTTGGTGTTCGTGAGGATGTGAAAACTATTGTCGATCCCACGAAGTGTGGGTACTATACTATGAAATTCATACACGACATAGTAACTCGGAGGAGCACAATAGTTACAGACATGTTGACGAGACAAACACCCTATAGTCAATTGGAATTAGACATGGTGAGAGTTGACTATTGTGACTTTATAGGACGTTACATTTGA

Protein sequence

MIQLTQIRLDADRWVIEYNDQDQWIGKNDTKMVSYIGTCVRNHVPISYASWKNVPSKLKEKNFVSIQVEETRPVAHDQQIISSPTHEEKIDQGRPCSLAVGSVDNIVAADTVFKRQWSTEVVYGVTLGVNEMFGSNQPKYNRGLCIHSPCANFKWLPEEQRSTFLCNKLTSTKNKLLICPYNPGYQWMVVAINLRTNIVYSIDYMGLGVREDVKTIVDPTKCGYYTMKFIHDIVTRRSTIVTDMLTRQTPYSQLELDMVRVDYCDFIGRYI

Homology

[Close]

BLAST of Cla007875 vs. NCBI nr
Match: gi|659072230|ref|XP_008464173.1| (PREDICTED: uncharacterized protein LOC103502117 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 2.3e-12
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 1


Query: 4   LTQIRLDADRWVIEYNDQDQWIGKNDTKMVSYIGTCVRNHVPISYASWKNVPSKLKEKNF 63
           +T++  D  + V+EYN+  Q IG++ TK+ S+IGT VR HVPISY SW +VP++LK+K +
Sbjct: 821 ITRVSCDGHKRVVEYNELGQPIGESATKLKSFIGTTVRVHVPISYHSWNDVPTELKDKIY 880

Query: 64  VSIQVEETRPVAHDQQIISSPTHEEKIDQGRPCSLAVGSVDNIVAADTVF 114
                                   E I+ G  C LA+G+ DN+V A T+F
Sbjct: 881 ------------------------ELIEDGTSCRLAIGTKDNVVGAGTIF 906

[Close]

BLAST of Cla007875 vs. NCBI nr
Match: gi|659090010|ref|XP_008445784.1| (PREDICTED: uncharacterized protein LOC103488708 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-09
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 1


Query: 1   MIQLTQIRLDADRWVIEYNDQDQWIGKNDTKMVSYIGTCVRNHVPISYASWKNVPSKLKE 60
           M ++ ++  D  + V+EYN+  Q IG++ TK+ S+IGT VR HVPISY SWK+VP++LK+
Sbjct: 724 MFEIVRVSCDGHKRVVEYNELGQPIGESATKLKSFIGTTVRVHVPISYQSWKDVPTELKD 783

Query: 61  KNFVSIQVEET 72
           K +  I+   T
Sbjct: 784 KIYELIEKAST 794

[Close]

BLAST of Cla007875 vs. NCBI nr
Match: gi|659101935|ref|XP_008451868.1| (PREDICTED: uncharacterized protein LOC103493028 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-09
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 1   MIQLTQIRLDADRWVIEYNDQDQWIGKNDTKMVSYIGTCVRNHVPISYASWKNVPSKLKE 60
           M +L  IR   +R  IEYND+ Q +G+N  KM S+IG CVR  +P++Y SWK VP +LK+
Sbjct: 31  MPELLHIRNSGERKTIEYNDRGQPVGENAKKMQSFIGVCVRQQIPVTYNSWKEVPQELKD 90

Query: 61  KNFVSIQVEETRPVAHDQQIISS 84
             F  IQ+     ++    I+ S
Sbjct: 91  TIFDCIQMSFVVDLSSKHYILQS 113

[Close]

BLAST of Cla007875 vs. NCBI nr
Match: gi|659101935|ref|XP_008451868.1| (PREDICTED: uncharacterized protein LOC103493028 [Cucumis melo])

HSP 1 Score: 43.5 bits (101), Expect = 6.8e-01
Identity = 23/64 (35.94%), Postives = 35/64 (54.69%), Query Frame = 1


Query: 69  EETRPVAHDQQIISSPTHEEKIDQGRPCSLAVGSVDNIVAADTVFKRQWSTEVVYGVTLG 128
           EET  V    Q++  P   E I +G PC LA+GS+DN+VA   +F+       ++G+ LG
Sbjct: 354 EETLEV----QVLQEP---ENISKGIPCHLAIGSLDNVVAVGKMFESDVQCPTIHGIPLG 410

Query: 129 VNEM 133
              +
Sbjct: 414 AENI 410

HSP 2 Score: 71.2 bits (173), Expect = 3.0e-09
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 1   MIQLTQIRLDADRWVIEYNDQDQWIGKNDTKMVSYIGTCVRNHVPISYASWKNVPSKLKE 60
           M +L  IR   +R  IEYND+ Q +G+N  KM S+IG CVR  +P++Y SWK VP +LK+
Sbjct: 31  MPELLHIRNSGERKTIEYNDRGQPVGENAKKMQSFIGVCVRQQIPLTYNSWKEVPQELKD 90

Query: 61  KNFVSIQVEETRPVAHDQQIISS 84
             F  IQ+     ++    I+ S
Sbjct: 91  TIFDCIQMSFVVDLSSKHYILQS 113

[Close]

BLAST of Cla007875 vs. NCBI nr
Match: gi|778691222|ref|XP_011653243.1| (PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-04
Identity = 37/147 (25.17%), Postives = 69/147 (46.94%), Query Frame = 1


Query: 158 EEQRSTFLCNKLTSTK-NKLLICPYNPGY-QWMVVAINLRTNIV---------------- 217
           +E RS  L ++L     ++L++ PYN G   W+++ I+LR N V                
Sbjct: 567 QENRSRNLISRLEMANLDQLVLIPYNTGTCHWILIVIDLRENCVYVMDPLRTKILPEFQG 626

Query: 218 --------YSIDYMGLGVREDV--KTIVDPT-----KCGYYTMKFIHDIVTRRSTIVTDM 272
                   +  ++     R  +  K I  P      +CGYY  K++ ++V   ++ ++D+
Sbjct: 627 VINKSLKHWQFEHSPKQYRSRIRWKPIKCPRPLGSIECGYYVQKYLRELVKNSNSHISDL 686

HSP 2 Score: 41.6 bits (96), Expect = 2.6e+00
Identity = 19/54 (35.19%), Postives = 32/54 (59.26%), Query Frame = 1


Query: 79  QIISSPTHEEKIDQGRPCSLAVGSVDNIVAADTVFKRQWSTEVVYGVTLGVNEM 133
           Q++  P   E I +G PC LA+GS+DN+VA   +F+       ++G+ LG + +
Sbjct: 360 QVLQEP---ENILKGIPCHLAIGSLDNVVAIGKMFESDVQCPTIHGIPLGADNI 410

HSP 3 Score: 65.1 bits (157), Expect = 2.2e-07
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 1  MIQLTQIRLDADRWVIEYNDQDQWIGKNDTKMVSYIGTCVRNHVPISYASWKNVPSKLKE 60
          M  +TQIR + +R V+EYN     IG+N  K+ S+IG+CV  H+PI Y SW +V  +LK+
Sbjct: 1  MFDVTQIRSEGERKVVEYNQDGVPIGENGVKLNSFIGSCVHYHIPIHYPSWIDVSIELKD 60

Query: 61 KNFVSIQ 68
          K +  ++
Sbjct: 61 KIYTIVE 67

The following BLAST results are available for this feature:

BLAST of Cla007875 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072230\|ref\|XP_008464173.1\|	2.3e-12	39.09	PREDICTED: uncharacterized protein LOC103502117 [Cucumis melo]	[more]
gi\|659090010\|ref\|XP_008445784.1\|	2.3e-09	46.48	PREDICTED: uncharacterized protein LOC103488708 [Cucumis melo]	[more]
gi\|659101935\|ref\|XP_008451868.1\|	2.3e-09	42.17	PREDICTED: uncharacterized protein LOC103493028 [Cucumis melo]	[more]
gi\|659101935\|ref\|XP_008451868.1\|	6.8e-01	35.94	PREDICTED: uncharacterized protein LOC103493028 [Cucumis melo]	[more]
gi\|778691222\|ref\|XP_011653243.1\|	2.9e-04	25.17	PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007875	Cla007875.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF54001	Cysteine proteinases	coord: 168..267 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007875	Silver-seed gourd	carwmB0478
Cla007875	Cucumber (Chinese Long) v3	cucwmB167
Cla007875	Watermelon (97103) v2	wmwmbB364
Cla007875	Wax gourd	wgowmB148
Cla007875	Cucumber (Gy14) v1	cgywmB342
Cla007875	Cucurbita maxima (Rimu)	cmawmB173
Cla007875	Cucurbita maxima (Rimu)	cmawmB767
Cla007875	Cucurbita moschata (Rifu)	cmowmB160
Cla007875	Cucurbita moschata (Rifu)	cmowmB760
Cla007875	Wild cucumber (PI 183967)	cpiwmB158
Cla007875	Melon (DHL92) v3.5.1	mewmB423
Cla007875	Melon (DHL92) v3.5.1	mewmB428
Cla007875	Watermelon (Charleston Gray)	wcgwmB109
Cla007875	Cucumber (Chinese Long) v2	cuwmB156
Cla007875	Cucurbita pepo (Zucchini)	cpewmB118
Cla007875	Cucurbita pepo (Zucchini)	cpewmB811
Cla007875	Bottle gourd (USVL1VR-Ls)	lsiwmB110
Cla007875	Cucumber (Gy14) v2	cgybwmB148
Cla007875	Melon (DHL92) v3.6.1	medwmB413
Cla007875	Melon (DHL92) v3.6.1	medwmB416