Cla007648 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007648
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Self-incompatibility protein (Fragment) (AHRD V1 -- C7FE84_PLACA); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1
Location	Chr6 : 8827255 .. 8827710 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCCGGCCTCCGTCGCCGTTGTTGCTCAGTGTTTCCTGATATTCCTCCTGATGTCATCCACCATCGACAGTGGCGATGGCGGCAGCGACACACGAAGTCTAATTTACGACAAGGTCACAGTGACGATAAAGAATACTTTACCTGACAATAAGGTGGTAACCCTTCATTGCAAGTCCAAAGACGACGATCTCGGCTACCATGATCTTCGCCATTTGGACGGCTTCAACTTCCGATTCAGTCCCAACTTCTGGGGTACGACGTTGTTTTTTTGCAGCTTCAATTGGCCTGGTGCCTTGCATTACTTTGACATCTATGTCTTTAAAAGAGACATAAAGGTGTGTAAACCATACTGTTCTTGGAACATAACAGAAAAAGGGCCATGCTTGCAGCATCGTCATTTTTGTTTTCTGTCGATTAAGGACGATGATGCCAAACATATGTTGGGTGATTAA

mRNA sequence

ATGATTCCGGCCTCCGTCGCCGTTGTTGCTCAGTGTTTCCTGATATTCCTCCTGATGTCATCCACCATCGACAGTGGCGATGGCGGCAGCGACACACGAAGTCTAATTTACGACAAGGTCACAGTGACGATAAAGAATACTTTACCTGACAATAAGGTGGTAACCCTTCATTGCAAGTCCAAAGACGACGATCTCGGCTACCATGATCTTCGCCATTTGGACGGCTTCAACTTCCGATTCAGTCCCAACTTCTGGGGTACGACGTTGTTTTTTTGCAGCTTCAATTGGCCTGGTGCCTTGCATTACTTTGACATCTATGTCTTTAAAAGAGACATAAAGGTGTGTAAACCATACTGTTCTTGGAACATAACAGAAAAAGGGCCATGCTTGCAGCATCGTCATTTTTGTTTTCTGTCGATTAAGGACGATGATGCCAAACATATGTTGGGTGATTAA

Coding sequence (CDS)

ATGATTCCGGCCTCCGTCGCCGTTGTTGCTCAGTGTTTCCTGATATTCCTCCTGATGTCATCCACCATCGACAGTGGCGATGGCGGCAGCGACACACGAAGTCTAATTTACGACAAGGTCACAGTGACGATAAAGAATACTTTACCTGACAATAAGGTGGTAACCCTTCATTGCAAGTCCAAAGACGACGATCTCGGCTACCATGATCTTCGCCATTTGGACGGCTTCAACTTCCGATTCAGTCCCAACTTCTGGGGTACGACGTTGTTTTTTTGCAGCTTCAATTGGCCTGGTGCCTTGCATTACTTTGACATCTATGTCTTTAAAAGAGACATAAAGGTGTGTAAACCATACTGTTCTTGGAACATAACAGAAAAAGGGCCATGCTTGCAGCATCGTCATTTTTGTTTTCTGTCGATTAAGGACGATGATGCCAAACATATGTTGGGTGATTAA

Protein sequence

MIPASVAVVAQCFLIFLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCLQHRHFCFLSIKDDDAKHMLGD

Homology

[Close]

BLAST of Cla007648 vs. TrEMBL
Match: V4S4P0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007065mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.1e-22
Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 1


Query: 1   MIPASVAVVAQCFLIFLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKS 60
           MI  S   V    L+  ++ ++I S  G S     +  ++TV + N L +   +T+HCKS
Sbjct: 1   MISFSKQPVLLLILLLHVLLASISSTSGWS----AMPPRITVIVNNDLDNRLDLTVHCKS 60

Query: 61  KDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWP--GALHYFDIYVFKRDIKVCKPY 120
           K+DDLG   L + + F F F PNFWG T+FFCS +WP    +++FDIYV  RD ++CK  
Sbjct: 61  KNDDLGERHLPYHNSFQFSFRPNFWGRTVFFCSMHWPPEHEIYWFDIYVTTRDRRLCKER 120

Query: 121 CSWNITEKGPCL 131
           CSWNI  +GPCL
Sbjct: 121 CSWNIKPRGPCL 128

[Close]

BLAST of Cla007648 vs. TrEMBL
Match: A0A059AYA1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01296 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.6e-22
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1


Query: 36  IYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFN 95
           I  KV V I N LP    +T+HC+SKD+DLG+H +     + FRF PNFWG TLFFCSF 
Sbjct: 16  IAGKVRVQILNDLPGGVTLTVHCQSKDNDLGFHQIPPNGMWEFRFKPNFWGNTLFFCSFQ 75

Query: 96  WPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCL 131
           WP   H+ D++V  RD+  C+  C W++   GPCL
Sbjct: 76  WPNQFHHHDVFVEDRDVVRCQGLCQWHVKPLGPCL 110

[Close]

BLAST of Cla007648 vs. TrEMBL
Match: A0A067DXH5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045924mg PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 1


Query: 39  KVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWP- 98
           ++TV + N L +   +T+HCKSK+DDLG   L + + F F F PNFWG T+FFCS +WP 
Sbjct: 4   RITVIVNNDLDNRLDLTVHCKSKNDDLGERHLPYHNSFQFSFRPNFWGRTVFFCSMHWPP 63

Query: 99  -GALHYFDIYVFKRDIKVCKPYCSWNITEKGPCL 131
              +++FDIYV  RD ++CK  CSWNI  +GPCL
Sbjct: 64  EHEIYWFDIYVTTRDRRLCKERCSWNIKPRGPCL 97

[Close]

BLAST of Cla007648 vs. TrEMBL
Match: B9RWN9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1023100 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.7e-21
Identity = 61/142 (42.96%), Postives = 73/142 (51.41%), Query Frame = 1


Query: 14  LIFLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHL 73
           L+ LL+ +T  S +G          K  V + N+L     +TLHCKSKDDDLG H L   
Sbjct: 11  LLLLLLITTALSAEGSH--------KTLVRVTNSLDGGADLTLHCKSKDDDLGVHLLHFN 70

Query: 74  DGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVC-KPYCSWNITEKGPCLQH 133
             F FRF PNFWGTT F CS  W G +H+FDIY   RD   C   YC W I + GP L  
Sbjct: 71  GSFQFRFWPNFWGTTKFGCSMEWGGKVHWFDIYRQNRDTDRCGNDYCLWIIKDSGPFLWF 130

Query: 134 R--------HFCFLSIKDDDAK 147
           R         FCF   +D  A+
Sbjct: 131 RPFYWGTSQFFCFFKWQDTHAR 144

[Close]

BLAST of Cla007648 vs. TrEMBL
Match: A0A059BAP4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00340 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 47/91 (51.65%), Postives = 66/91 (72.53%), Query Frame = 1


Query: 39  KVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPG 98
           KVTV I N L  + ++ +HCKSK++DLG HD++  + ++F F+P F+G TLFFCSF+WPG
Sbjct: 3   KVTVLINNRLGGDAILRVHCKSKNNDLGVHDIK--ESWSFSFTPKFFGGTLFFCSFSWPG 62

Query: 99  ALHYFDIYVFKRDIKVCKPYCSWNITEKGPC 130
              +FDIY  KRD++ C+  C W I+ KGPC
Sbjct: 63  RFEWFDIYKEKRDVRFCE-QCIWKISPKGPC 90

[Close]

BLAST of Cla007648 vs. NCBI nr
Match: gi|658019783|ref|XP_008345254.1| (PREDICTED: uncharacterized protein LOC103408167 [Malus domestica])

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-23
Identity = 59/136 (43.38%), Postives = 77/136 (56.62%), Query Frame = 1


Query: 1   MIPASVAVVAQCFLIFLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKS 60
           M P     +    L+ +++++++++G         +  KVT+ I N L  N  +TLHCKS
Sbjct: 1   MSPCLTNALQFMLLJLVVLTTSVEAG---------LLSKVTIQITNALGPNTXLTLHCKS 60

Query: 61  KDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCS 120
           KDDDLGYH L   D F F+F PN WGTTLFFCSF WPG  HY+D  VF+ D   C   C 
Sbjct: 61  KDDDLGYHRLHPGDSFAFKFKPNIWGTTLFFCSFEWPGEXHYYD--VFRADRDGCGK-CY 120

Query: 121 WNITEKGPCLQHRHFC 137
           W +   G C  H H C
Sbjct: 121 WTVYFLGIC-SHDHKC 123

[Close]

BLAST of Cla007648 vs. NCBI nr
Match: gi|567854821|ref|XP_006420530.1| (hypothetical protein CICLE_v10007065mg [Citrus clementina])

HSP 1 Score: 113.6 bits (283), Expect = 3.0e-22
Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 1


Query: 1   MIPASVAVVAQCFLIFLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKS 60
           MI  S   V    L+  ++ ++I S  G S     +  ++TV + N L +   +T+HCKS
Sbjct: 1   MISFSKQPVLLLILLLHVLLASISSTSGWS----AMPPRITVIVNNDLDNRLDLTVHCKS 60

Query: 61  KDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWP--GALHYFDIYVFKRDIKVCKPY 120
           K+DDLG   L + + F F F PNFWG T+FFCS +WP    +++FDIYV  RD ++CK  
Sbjct: 61  KNDDLGERHLPYHNSFQFSFRPNFWGRTVFFCSMHWPPEHEIYWFDIYVTTRDRRLCKER 120

Query: 121 CSWNITEKGPCL 131
           CSWNI  +GPCL
Sbjct: 121 CSWNIKPRGPCL 128

[Close]

BLAST of Cla007648 vs. NCBI nr
Match: gi|629092641|gb|KCW58636.1| (hypothetical protein EUGRSUZ_H01296 [Eucalyptus grandis])

HSP 1 Score: 112.5 bits (280), Expect = 6.6e-22
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1


Query: 36  IYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFN 95
           I  KV V I N LP    +T+HC+SKD+DLG+H +     + FRF PNFWG TLFFCSF 
Sbjct: 16  IAGKVRVQILNDLPGGVTLTVHCQSKDNDLGFHQIPPNGMWEFRFKPNFWGNTLFFCSFQ 75

Query: 96  WPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCL 131
           WP   H+ D++V  RD+  C+  C W++   GPCL
Sbjct: 76  WPNQFHHHDVFVEDRDVVRCQGLCQWHVKPLGPCL 110

[Close]

BLAST of Cla007648 vs. NCBI nr
Match: gi|731433595|ref|XP_010644709.1| (PREDICTED: uncharacterized protein LOC104877645 [Vitis vinifera])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 58/125 (46.40%), Postives = 71/125 (56.80%), Query Frame = 1


Query: 16  FLLMSSTIDSGDGGSDTRSLIYDKVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDG 75
           F+L+   +   DGG     +I +KV + I N L     + LHC+SKDDDLG H L     
Sbjct: 11  FVLLVLLVRLCDGGP---WVIENKVDLRITNDLGTGADLNLHCQSKDDDLGTHVLAPNQF 70

Query: 76  FNFRFSPNFWGTTLFFCSFNWPGALHYFDIYVFKRDIKVCKPYCSWNITEKGPCLQHRHF 135
           F FRF PNFWGTTL+FC F W G  H+F+IYV KRD   C   C W +   GPCL  R F
Sbjct: 71  FEFRFRPNFWGTTLYFCKFWWGGESHWFNIYVEKRDTSRCDSKCWWMVGPVGPCLLDRRF 130

Query: 136 CFLSI 141
              S+
Sbjct: 131 GIYSL 132

[Close]

BLAST of Cla007648 vs. NCBI nr
Match: gi|641827091|gb|KDO46290.1| (hypothetical protein CISIN_1g045924mg [Citrus sinensis])

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-21
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 1


Query: 39  KVTVTIKNTLPDNKVVTLHCKSKDDDLGYHDLRHLDGFNFRFSPNFWGTTLFFCSFNWP- 98
           ++TV + N L +   +T+HCKSK+DDLG   L + + F F F PNFWG T+FFCS +WP 
Sbjct: 4   RITVIVNNDLDNRLDLTVHCKSKNDDLGERHLPYHNSFQFSFRPNFWGRTVFFCSMHWPP 63

Query: 99  -GALHYFDIYVFKRDIKVCKPYCSWNITEKGPCL 131
              +++FDIYV  RD ++CK  CSWNI  +GPCL
Sbjct: 64  EHEIYWFDIYVTTRDRRLCKERCSWNIKPRGPCL 97

The following BLAST results are available for this feature:

BLAST of Cla007648 vs. TrEMBL


Match Name	E-value	Identity	Description
V4S4P0_9ROSI	2.1e-22	43.18	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007065mg PE=4 SV=1	[more]
A0A059AYA1_EUCGR	4.6e-22	49.47	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01296 PE=4 SV=1	[more]
A0A067DXH5_CITSI	1.0e-21	51.06	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045924mg PE=4 SV=1	[more]
B9RWN9_RICCO	8.7e-21	42.96	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1023100 PE=4 SV=1	[more]
A0A059BAP4_EUCGR	1.1e-20	51.65	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00340 PE=4 SV=1	[more]

BLAST of Cla007648 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|658019783\|ref\|XP_008345254.1\|	6.0e-23	43.38	PREDICTED: uncharacterized protein LOC103408167 [Malus domestica]	[more]
gi\|567854821\|ref\|XP_006420530.1\|	3.0e-22	43.18	hypothetical protein CICLE_v10007065mg [Citrus clementina]	[more]
gi\|629092641\|gb\|KCW58636.1\|	6.6e-22	49.47	hypothetical protein EUGRSUZ_H01296 [Eucalyptus grandis]	[more]
gi\|731433595\|ref\|XP_010644709.1\|	1.1e-21	46.40	PREDICTED: uncharacterized protein LOC104877645 [Vitis vinifera]	[more]
gi\|641827091\|gb\|KDO46290.1\|	1.5e-21	51.06	hypothetical protein CISIN_1g045924mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007648	Cla007648.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 41..133 score: 3.6
None	No IPR available	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 1..133 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007648	Cla97C06G117270	Watermelon (97103) v2	wmwmbB406
Cla007648	Csa2G162130	Cucumber (Chinese Long) v2	cuwmB172
Cla007648	ClCG06G007560	Watermelon (Charleston Gray)	wcgwmB344
Cla007648	Cucsa.140400	Cucumber (Gy14) v1	cgywmB249
Cla007648	Lsi09G011650	Bottle gourd (USVL1VR-Ls)	lsiwmB040
Cla007648	CsaV3_2G012100	Cucumber (Chinese Long) v3	cucwmB184
Cla007648	Bhi12G001374	Wax gourd	wgowmB097
Cla007648	Bhi12G001336	Wax gourd	wgowmB106

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007648	Watermelon (97103) v1	wmwmB117
Cla007648	Watermelon (97103) v1	wmwmB138
Cla007648	Cucumber (Gy14) v1	cgywmB483
Cla007648	Cucurbita maxima (Rimu)	cmawmB250
Cla007648	Cucurbita maxima (Rimu)	cmawmB358
Cla007648	Cucurbita maxima (Rimu)	cmawmB611
Cla007648	Cucurbita maxima (Rimu)	cmawmB811
Cla007648	Cucurbita maxima (Rimu)	cmawmB878
Cla007648	Cucurbita moschata (Rifu)	cmowmB239
Cla007648	Cucurbita moschata (Rifu)	cmowmB353
Cla007648	Cucurbita moschata (Rifu)	cmowmB604
Cla007648	Cucurbita moschata (Rifu)	cmowmB802
Cla007648	Cucurbita moschata (Rifu)	cmowmB867
Cla007648	Melon (DHL92) v3.5.1	mewmB486
Cla007648	Melon (DHL92) v3.5.1	mewmB430
Cla007648	Watermelon (Charleston Gray)	wcgwmB311
Cla007648	Watermelon (Charleston Gray)	wcgwmB395
Cla007648	Cucumber (Chinese Long) v2	cuwmB277
Cla007648	Cucumber (Chinese Long) v2	cuwmB279
Cla007648	Cucurbita pepo (Zucchini)	cpewmB161
Cla007648	Cucurbita pepo (Zucchini)	cpewmB334
Cla007648	Cucurbita pepo (Zucchini)	cpewmB622
Cla007648	Cucurbita pepo (Zucchini)	cpewmB752
Cla007648	Cucurbita pepo (Zucchini)	cpewmB853
Cla007648	Bottle gourd (USVL1VR-Ls)	lsiwmB382
Cla007648	Cucumber (Gy14) v2	cgybwmB163
Cla007648	Cucumber (Gy14) v2	cgybwmB260
Cla007648	Cucumber (Gy14) v2	cgybwmB262
Cla007648	Melon (DHL92) v3.6.1	medwmB418
Cla007648	Melon (DHL92) v3.6.1	medwmB474
Cla007648	Silver-seed gourd	carwmB0219
Cla007648	Silver-seed gourd	carwmB0224
Cla007648	Silver-seed gourd	carwmB0785
Cla007648	Silver-seed gourd	carwmB0962
Cla007648	Silver-seed gourd	carwmB1077
Cla007648	Cucumber (Chinese Long) v3	cucwmB286
Cla007648	Cucumber (Chinese Long) v3	cucwmB288
Cla007648	Watermelon (97103) v2	wmwmbB402
Cla007648	Watermelon (97103) v2	wmwmbB413